Wall clock time and date at job start Mon Mar 30 2020 03:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99812 * 2 1 4 4 H 1.48500 * 109.46759 * 269.99649 * 3 2 1 5 5 H 1.48490 * 109.47347 * 30.00206 * 3 2 1 6 6 H 1.48504 * 109.46883 * 150.00307 * 3 2 1 7 7 C 1.37872 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99803 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00278 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.54066 * 59.89457 * 9 7 2 11 11 C 1.53090 * 109.50693 * 299.78762 * 9 7 2 12 12 O 1.43019 * 109.25850 * 183.21760 * 11 9 7 13 13 C 1.43015 * 113.74110 * 58.66841 * 12 11 9 14 14 C 1.53103 * 109.25472 * 301.33137 * 13 12 11 15 15 N 1.47014 * 109.50414 * 180.02562 * 9 7 2 16 16 C 1.46896 * 111.00454 * 302.33000 * 15 9 7 17 17 H 1.08994 * 109.52275 * 62.53272 * 16 15 9 18 18 C 1.53181 * 109.51919 * 302.41142 * 16 15 9 19 19 C 1.53176 * 109.03560 * 183.04962 * 18 16 15 20 20 C 1.53095 * 109.16286 * 56.98068 * 19 18 16 21 21 O 1.42902 * 109.41528 * 302.39400 * 20 19 18 22 22 C 1.42895 * 114.09785 * 61.15752 * 21 20 19 23 23 H 0.97000 * 120.00196 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.51180 * 63.27935 * 11 9 7 25 25 H 1.09007 * 109.54187 * 303.16810 * 11 9 7 26 26 H 1.08996 * 109.50671 * 181.40038 * 13 12 11 27 27 H 1.08997 * 109.54058 * 61.28579 * 13 12 11 28 28 H 1.08994 * 109.50691 * 296.91172 * 14 13 12 29 29 H 1.09005 * 109.54167 * 176.80413 * 14 13 12 30 30 H 1.08996 * 109.54405 * 63.18678 * 18 16 15 31 31 H 1.08999 * 109.61813 * 302.95941 * 18 16 15 32 32 H 1.09001 * 109.52789 * 176.89009 * 19 18 16 33 33 H 1.09007 * 109.52321 * 297.07724 * 19 18 16 34 34 H 1.08995 * 109.48092 * 62.37615 * 20 19 18 35 35 H 1.09004 * 109.48253 * 182.40879 * 20 19 18 36 36 H 1.09010 * 109.48185 * 178.86083 * 22 21 20 37 37 H 1.09000 * 109.48534 * 58.82375 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6221 -2.5571 -0.8889 11 6 0.3750 -2.5837 1.2522 12 8 -0.2797 -3.8548 1.2850 13 6 0.6203 -4.9663 1.2861 14 6 1.4987 -4.9058 0.0336 15 7 2.2057 -3.6172 -0.0005 16 6 3.1053 -3.5413 -1.1593 17 1 3.6959 -2.6270 -1.1027 18 6 2.2792 -3.5380 -2.4493 19 6 3.2292 -3.5357 -3.6509 20 6 4.1584 -4.7489 -3.5591 21 8 4.8738 -4.7069 -2.3228 22 6 4.0393 -4.7544 -1.1639 23 1 -0.4850 0.8400 0.0004 24 1 -0.3718 -1.7901 1.2284 25 1 0.9971 -2.4717 2.1403 26 1 0.0509 -5.8957 1.2867 27 1 1.2501 -4.9246 2.1747 28 1 0.8739 -5.0021 -0.8542 29 1 2.2247 -5.7186 0.0577 30 1 1.6523 -2.6468 -2.4785 31 1 1.6503 -4.4276 -2.4834 32 1 2.6504 -3.5891 -4.5730 33 1 3.8224 -2.6212 -3.6445 34 1 3.5677 -5.6637 -3.6063 35 1 4.8650 -4.7292 -4.3889 36 1 4.6600 -4.7385 -0.2679 37 1 3.4468 -5.6692 -1.1796 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259750729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:35 Heat of formation + Delta-G solvation = -105.066120 kcal Electronic energy + Delta-G solvation = -18953.146065 eV Core-core repulsion = 16115.650136 eV Total energy + Delta-G solvation = -2837.495929 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.18495 -39.47579 -36.78466 -35.10930 -33.66267 -31.71109 -31.07037 -27.68604 -26.81532 -26.11300 -23.97686 -23.45409 -21.87469 -20.17255 -18.53478 -17.65667 -17.33515 -16.79273 -16.63404 -16.36967 -15.75729 -15.53788 -15.31624 -15.15212 -15.13860 -14.16997 -14.08535 -13.71776 -13.43297 -12.89988 -12.80154 -12.62945 -12.51667 -12.29180 -12.07143 -11.98952 -11.78422 -11.47330 -11.28359 -10.97204 -10.71576 -10.41324 -10.17106 -8.97079 -8.19735 -6.30286 1.38931 1.40854 1.51226 2.37403 2.82751 3.05762 3.21136 3.36370 3.84193 3.94205 3.96785 4.06970 4.23983 4.25962 4.34710 4.46564 4.50201 4.63608 4.65259 4.68817 4.76726 4.87969 4.93541 4.98036 5.02842 5.08365 5.18444 5.33754 5.44211 5.54258 5.64335 5.97166 6.16914 6.29707 6.47142 6.64803 6.83301 7.38859 8.87609 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.010670 C = 0.007641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.757838 B = 2623.528658 C = 3663.392053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.200 3.800 10 H -0.022 1.022 11 C 0.079 3.921 12 O -0.420 6.420 13 C 0.059 3.941 14 C 0.011 3.989 15 N -0.531 5.531 16 C 0.065 3.935 17 H 0.066 0.934 18 C -0.145 4.145 19 C -0.146 4.146 20 C 0.061 3.939 21 O -0.396 6.396 22 C 0.075 3.925 23 H 0.265 0.735 24 H 0.093 0.907 25 H 0.027 0.973 26 H 0.117 0.883 27 H 0.055 0.945 28 H 0.026 0.974 29 H 0.107 0.893 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 -10.236 -4.108 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.092 3.908 10 H -0.004 1.004 11 C 0.003 3.997 12 O -0.339 6.339 13 C -0.018 4.018 14 C -0.117 4.117 15 N -0.256 5.256 16 C -0.044 4.044 17 H 0.084 0.916 18 C -0.184 4.184 19 C -0.184 4.184 20 C -0.016 4.016 21 O -0.314 6.314 22 C -0.002 4.002 23 H 0.074 0.926 24 H 0.111 0.889 25 H 0.045 0.955 26 H 0.135 0.865 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.124 0.876 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.725 -10.091 -3.653 12.164 hybrid contribution -0.570 1.366 -0.695 1.635 sum 5.156 -8.725 -4.348 11.028 Atomic orbital electron populations 1.69972 1.07129 1.27675 1.51166 1.25702 0.95655 1.02420 0.94558 0.85536 0.78719 0.79153 0.78171 1.20298 1.20679 1.19297 1.21243 0.93128 0.90472 1.50621 0.92348 1.19536 0.89540 0.88993 0.92697 1.00419 1.22769 0.96481 0.83456 0.97029 1.87864 1.35194 1.15759 1.95117 1.22809 0.92310 0.89944 0.96727 1.22948 0.97466 0.93464 0.97865 1.62427 1.20504 1.02345 1.40345 1.22135 0.94420 0.99675 0.88153 0.91561 1.22084 0.98783 1.00939 0.96595 1.22132 0.98183 0.99943 0.98178 1.22747 0.95709 0.96521 0.86579 1.87889 1.34206 1.94786 1.14561 1.22660 0.93222 0.95752 0.88590 0.92592 0.88907 0.95501 0.86477 0.92712 0.95589 0.87552 0.94157 0.92216 0.89597 0.92266 0.91995 0.86690 0.88151 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.55 11.37 21.45 0.24 -52.30 16 2 C 0.02 0.87 5.30 84.65 0.45 1.32 16 3 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.52 -28.08 7.96 25.60 0.20 -27.88 16 8 H 0.06 3.20 6.52 -2.91 -0.02 3.18 16 9 C 0.20 10.14 1.43 44.18 0.06 10.20 16 10 H -0.02 -1.24 6.48 -2.39 -0.02 -1.25 16 11 C 0.08 4.04 6.02 72.01 0.43 4.47 16 12 O -0.42 -19.03 10.83 -148.98 -1.61 -20.64 16 13 C 0.06 2.02 7.01 72.02 0.50 2.53 16 14 C 0.01 0.36 4.86 86.32 0.42 0.78 16 15 N -0.53 -22.14 4.58 -848.76 -3.89 -26.02 16 16 C 0.07 2.48 2.16 45.01 0.10 2.57 16 17 H 0.07 2.93 6.43 -2.39 -0.02 2.92 16 18 C -0.14 -5.27 4.55 30.71 0.14 -5.13 16 19 C -0.15 -4.19 6.14 30.69 0.19 -4.00 16 20 C 0.06 1.46 6.84 72.01 0.49 1.95 16 21 O -0.40 -11.77 10.77 -148.98 -1.60 -13.37 16 22 C 0.07 2.25 5.77 72.01 0.42 2.66 16 23 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 24 H 0.09 5.24 6.19 -2.39 -0.01 5.23 16 25 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.12 3.13 8.14 -2.39 -0.02 3.12 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.03 0.94 6.54 -2.39 -0.02 0.92 16 29 H 0.11 2.88 6.02 -2.38 -0.01 2.86 16 30 H 0.04 1.80 6.62 -2.39 -0.02 1.79 16 31 H 0.06 2.05 6.49 -2.39 -0.02 2.03 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 37 H 0.07 1.72 6.14 -2.39 -0.01 1.70 16 Total: -1.00 -62.09 277.33 -0.37 -62.47 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 1.05 Total: 14.89 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 3.41 Total: -10.53 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -3.64 Total: -78.33 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -3.22 Total: -34.01 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -62.09 -0.37 -62.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259750729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.600 kcal (2) G-P(sol) polarization free energy of solvation -62.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds