Wall clock time and date at job start Mon Mar 30 2020 03:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08994 * 109.51143 * 300.36623 * 9 7 2 11 11 C 1.53102 * 109.50389 * 60.49993 * 9 7 2 12 12 O 1.43014 * 109.25686 * 176.78114 * 11 9 7 13 13 C 1.43015 * 113.74090 * 301.32693 * 12 11 9 14 14 C 1.53105 * 109.25753 * 58.67217 * 13 12 11 15 15 N 1.47012 * 109.50684 * 180.27741 * 9 7 2 16 16 C 1.46899 * 110.99988 * 57.67630 * 15 9 7 17 17 H 1.08999 * 109.52458 * 300.00209 * 16 15 9 18 18 C 1.53179 * 109.52626 * 179.87533 * 16 15 9 19 19 C 1.53172 * 109.03916 * 183.11812 * 18 16 15 20 20 C 1.53088 * 109.16552 * 56.97600 * 19 18 16 21 21 O 1.42905 * 109.41915 * 302.39208 * 20 19 18 22 22 C 1.42915 * 114.15095 * 61.12297 * 21 20 19 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.50494 * 296.71427 * 11 9 7 25 25 H 1.08994 * 109.50802 * 56.84437 * 11 9 7 26 26 H 1.08994 * 109.50709 * 298.73756 * 13 12 11 27 27 H 1.09000 * 109.50689 * 178.60543 * 13 12 11 28 28 H 1.08994 * 109.50618 * 183.21673 * 14 13 12 29 29 H 1.08998 * 109.53766 * 63.10463 * 14 13 12 30 30 H 1.09009 * 109.53954 * 302.97986 * 18 16 15 31 31 H 1.08992 * 109.54494 * 63.15285 * 18 16 15 32 32 H 1.09005 * 109.52421 * 176.88694 * 19 18 16 33 33 H 1.09004 * 109.52029 * 297.07444 * 19 18 16 34 34 H 1.08993 * 109.48260 * 62.37937 * 20 19 18 35 35 H 1.09009 * 109.48204 * 182.39850 * 20 19 18 36 36 H 1.08997 * 109.53644 * 178.92629 * 22 21 20 37 37 H 1.09000 * 109.42505 * 58.89146 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6232 -2.5529 0.8946 11 6 0.3747 -2.5890 -1.2467 12 8 -0.2800 -3.8602 -1.2739 13 6 0.6201 -4.9716 -1.2706 14 6 1.4991 -4.9058 -0.0187 15 7 2.2058 -3.6170 0.0103 16 6 3.1055 -3.5360 1.1687 17 1 3.6637 -2.6005 1.1317 18 6 4.0818 -4.7160 1.1422 19 6 4.9623 -4.6642 2.3946 20 6 4.0691 -4.6769 3.6378 21 8 3.1648 -3.5716 3.5845 22 6 2.2838 -3.5907 2.4593 23 1 -0.4850 0.8400 0.0004 24 1 -0.3721 -1.7954 -1.2260 25 1 0.9969 -2.4810 -2.1351 26 1 1.2495 -4.9329 -2.1596 27 1 0.0507 -5.9011 -1.2671 28 1 2.2249 -5.7186 -0.0405 29 1 0.8750 -4.9988 0.8701 30 1 3.5226 -5.6516 1.1281 31 1 4.7074 -4.6517 0.2521 32 1 5.6228 -5.5312 2.4116 33 1 5.5580 -3.7514 2.3834 34 1 3.5035 -5.6080 3.6695 35 1 4.6884 -4.5972 4.5313 36 1 1.6179 -2.7289 2.5032 37 1 1.6940 -4.5072 2.4762 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259750732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:37 Heat of formation + Delta-G solvation = -84.639265 kcal Electronic energy + Delta-G solvation = -18949.148478 eV Core-core repulsion = 16112.538323 eV Total energy + Delta-G solvation = -2836.610154 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.66852 -37.91087 -35.09252 -33.30491 -32.38898 -29.95816 -29.42162 -25.93510 -25.07391 -24.56883 -22.53928 -22.16339 -19.98257 -18.69804 -16.73866 -16.07120 -15.66851 -15.39549 -15.00582 -14.72581 -14.42196 -13.95139 -13.73483 -13.59529 -13.01085 -12.83579 -12.45929 -12.27165 -12.06893 -11.24589 -11.04366 -10.91179 -10.84707 -10.64690 -10.60463 -10.43643 -10.12384 -9.87106 -9.53853 -9.34845 -9.07441 -8.69387 -8.38915 -7.22412 -6.13898 -4.18021 3.26255 3.34562 3.38846 4.18932 4.34321 4.74090 4.90255 5.09565 5.14605 5.21527 5.22730 5.43258 5.51695 5.67208 5.73991 5.79134 5.88742 5.92129 5.99539 6.04501 6.25133 6.26825 6.30920 6.40705 6.55692 6.71238 6.73328 6.92808 7.24064 7.43902 7.55069 7.68455 7.88025 8.12869 8.15757 8.48988 8.88796 9.47940 10.94118 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.010721 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.634279 B = 2610.971208 C = 3644.841691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.185 3.815 10 H 0.013 0.987 11 C 0.068 3.932 12 O -0.404 6.404 13 C 0.068 3.932 14 C 0.010 3.990 15 N -0.522 5.522 16 C 0.066 3.934 17 H 0.101 0.899 18 C -0.119 4.119 19 C -0.153 4.153 20 C 0.059 3.941 21 O -0.382 6.382 22 C 0.034 3.966 23 H 0.264 0.736 24 H 0.123 0.877 25 H 0.034 0.966 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 -9.431 2.500 11.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.085 0.915 9 C 0.079 3.921 10 H 0.030 0.970 11 C -0.008 4.008 12 O -0.323 6.323 13 C -0.010 4.010 14 C -0.118 4.118 15 N -0.248 5.248 16 C -0.043 4.043 17 H 0.119 0.881 18 C -0.157 4.157 19 C -0.191 4.191 20 C -0.018 4.018 21 O -0.300 6.300 22 C -0.044 4.044 23 H 0.074 0.926 24 H 0.141 0.859 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.124 0.876 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.695 -9.126 2.206 10.981 hybrid contribution 0.243 0.620 0.522 0.846 sum 5.937 -8.506 2.728 10.726 Atomic orbital electron populations 1.69847 1.05898 1.26970 1.50404 1.24971 0.94944 0.99411 0.94764 0.86399 0.80088 0.83159 0.77597 1.19649 1.20937 1.20962 1.21066 0.93424 0.89135 1.50923 0.91500 1.19907 0.89568 0.88155 0.94461 0.96971 1.23152 0.97543 0.82760 0.97347 1.87912 1.33839 1.15546 1.95022 1.22430 0.91985 0.90227 0.96363 1.22825 0.96734 0.94164 0.98111 1.62515 1.21091 1.02048 1.39159 1.22168 0.94333 0.99464 0.88373 0.88097 1.21758 0.97873 0.98460 0.97606 1.22174 0.98704 1.02494 0.95740 1.22514 0.91709 0.89748 0.97824 1.87934 1.49872 1.46064 1.46135 1.23407 0.92580 1.02044 0.86405 0.92601 0.85921 0.94784 0.93528 0.90378 0.91122 0.95056 0.92307 0.91081 0.91439 0.91004 0.93960 0.89551 0.87573 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.74 11.38 55.43 0.63 -24.11 16 2 C 0.06 1.64 5.31 -17.82 -0.09 1.54 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -13.41 7.93 -34.44 -0.27 -13.68 16 8 H 0.07 1.78 6.51 -52.49 -0.34 1.44 16 9 C 0.19 4.57 1.50 -68.75 -0.10 4.47 16 10 H 0.01 0.35 6.50 -51.93 -0.34 0.01 16 11 C 0.07 1.68 6.03 37.21 0.22 1.90 16 12 O -0.40 -9.16 10.83 -35.23 -0.38 -9.54 16 13 C 0.07 1.24 7.01 37.21 0.26 1.50 16 14 C 0.01 0.19 4.88 -3.71 -0.02 0.17 16 15 N -0.52 -10.96 4.56 -219.62 -1.00 -11.96 16 16 C 0.07 1.26 2.17 -67.57 -0.15 1.12 16 17 H 0.10 2.19 6.34 -51.93 -0.33 1.86 16 18 C -0.12 -1.82 5.06 -26.55 -0.13 -1.95 16 19 C -0.15 -2.02 6.14 -26.60 -0.16 -2.18 16 20 C 0.06 0.82 6.84 37.20 0.25 1.08 16 21 O -0.38 -6.99 10.76 -35.23 -0.38 -7.37 16 22 C 0.03 0.65 5.42 37.21 0.20 0.85 16 23 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.12 3.31 6.20 -51.93 -0.32 2.98 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.10 6.05 -51.93 -0.31 0.79 16 29 H 0.03 0.59 6.47 -51.93 -0.34 0.26 16 30 H 0.06 0.84 6.14 -51.92 -0.32 0.53 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.11 2.37 6.61 -51.93 -0.34 2.03 16 37 H 0.04 0.71 6.42 -51.93 -0.33 0.38 16 LS Contribution 277.35 15.07 4.18 4.18 Total: -1.00 -28.13 277.35 -7.46 -35.59 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.49 Total: 2.46 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 0.01 Total: -5.19 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.37 Total: -36.07 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.76 Total: -16.91 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.13 -7.46 -35.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259750732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.054 kcal (2) G-P(sol) polarization free energy of solvation -28.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds