Wall clock time and date at job start Mon Mar 30 2020 03:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08994 * 109.51143 * 300.36623 * 9 7 2 11 11 C 1.53102 * 109.50389 * 60.49993 * 9 7 2 12 12 O 1.43014 * 109.25686 * 176.78114 * 11 9 7 13 13 C 1.43015 * 113.74090 * 301.32693 * 12 11 9 14 14 C 1.53105 * 109.25753 * 58.67217 * 13 12 11 15 15 N 1.47012 * 109.50684 * 180.27741 * 9 7 2 16 16 C 1.46899 * 110.99988 * 57.67630 * 15 9 7 17 17 H 1.08999 * 109.52458 * 300.00209 * 16 15 9 18 18 C 1.53179 * 109.52626 * 179.87533 * 16 15 9 19 19 C 1.53172 * 109.03916 * 183.11812 * 18 16 15 20 20 C 1.53088 * 109.16552 * 56.97600 * 19 18 16 21 21 O 1.42905 * 109.41915 * 302.39208 * 20 19 18 22 22 C 1.42915 * 114.15095 * 61.12297 * 21 20 19 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.50494 * 296.71427 * 11 9 7 25 25 H 1.08994 * 109.50802 * 56.84437 * 11 9 7 26 26 H 1.08994 * 109.50709 * 298.73756 * 13 12 11 27 27 H 1.09000 * 109.50689 * 178.60543 * 13 12 11 28 28 H 1.08994 * 109.50618 * 183.21673 * 14 13 12 29 29 H 1.08998 * 109.53766 * 63.10463 * 14 13 12 30 30 H 1.09009 * 109.53954 * 302.97986 * 18 16 15 31 31 H 1.08992 * 109.54494 * 63.15285 * 18 16 15 32 32 H 1.09005 * 109.52421 * 176.88694 * 19 18 16 33 33 H 1.09004 * 109.52029 * 297.07444 * 19 18 16 34 34 H 1.08993 * 109.48260 * 62.37937 * 20 19 18 35 35 H 1.09009 * 109.48204 * 182.39850 * 20 19 18 36 36 H 1.08997 * 109.53644 * 178.92629 * 22 21 20 37 37 H 1.09000 * 109.42505 * 58.89146 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6232 -2.5529 0.8946 11 6 0.3747 -2.5890 -1.2467 12 8 -0.2800 -3.8602 -1.2739 13 6 0.6201 -4.9716 -1.2706 14 6 1.4991 -4.9058 -0.0187 15 7 2.2058 -3.6170 0.0103 16 6 3.1055 -3.5360 1.1687 17 1 3.6637 -2.6005 1.1317 18 6 4.0818 -4.7160 1.1422 19 6 4.9623 -4.6642 2.3946 20 6 4.0691 -4.6769 3.6378 21 8 3.1648 -3.5716 3.5845 22 6 2.2838 -3.5907 2.4593 23 1 -0.4850 0.8400 0.0004 24 1 -0.3721 -1.7954 -1.2260 25 1 0.9969 -2.4810 -2.1351 26 1 1.2495 -4.9329 -2.1596 27 1 0.0507 -5.9011 -1.2671 28 1 2.2249 -5.7186 -0.0405 29 1 0.8750 -4.9988 0.8701 30 1 3.5226 -5.6516 1.1281 31 1 4.7074 -4.6517 0.2521 32 1 5.6228 -5.5312 2.4116 33 1 5.5580 -3.7514 2.3834 34 1 3.5035 -5.6080 3.6695 35 1 4.6884 -4.5972 4.5313 36 1 1.6179 -2.7289 2.5032 37 1 1.6940 -4.5072 2.4762 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259750732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:37 Heat of formation + Delta-G solvation = -105.299346 kcal Electronic energy + Delta-G solvation = -18950.044366 eV Core-core repulsion = 16112.538323 eV Total energy + Delta-G solvation = -2837.506042 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.19488 -39.46571 -36.72469 -35.19335 -33.75433 -31.69621 -30.94973 -27.69870 -26.81285 -26.03255 -24.15404 -23.61248 -21.52534 -20.26651 -18.60648 -17.65859 -17.22243 -17.00933 -16.58708 -16.35986 -15.92242 -15.56593 -15.29690 -15.26169 -14.56528 -14.35456 -13.99633 -13.85621 -13.51278 -12.90513 -12.67472 -12.61738 -12.47510 -12.36867 -12.15416 -11.94017 -11.72017 -11.42066 -11.13958 -10.95606 -10.74768 -10.57834 -10.24587 -8.92193 -8.19841 -6.30522 1.39089 1.41274 1.52719 2.37941 2.83740 3.05557 3.17837 3.36473 3.81112 3.92445 4.03766 4.08822 4.15893 4.25100 4.39223 4.43890 4.51691 4.57023 4.67505 4.72718 4.79864 4.87899 4.93057 4.98221 5.04390 5.10378 5.21175 5.34922 5.42863 5.52961 5.64617 5.96183 6.15493 6.32002 6.46728 6.63867 6.83046 7.38831 8.87768 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.010721 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.634279 B = 2610.971208 C = 3644.841691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.195 3.805 10 H -0.024 1.024 11 C 0.081 3.919 12 O -0.420 6.420 13 C 0.059 3.941 14 C 0.011 3.989 15 N -0.528 5.528 16 C 0.066 3.934 17 H 0.067 0.933 18 C -0.111 4.111 19 C -0.147 4.147 20 C 0.049 3.951 21 O -0.406 6.406 22 C 0.047 3.953 23 H 0.265 0.735 24 H 0.093 0.907 25 H 0.028 0.972 26 H 0.055 0.945 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.024 0.976 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.517 -11.411 2.628 13.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.088 3.912 10 H -0.007 1.007 11 C 0.004 3.996 12 O -0.339 6.339 13 C -0.018 4.018 14 C -0.117 4.117 15 N -0.254 5.254 16 C -0.043 4.043 17 H 0.085 0.915 18 C -0.149 4.149 19 C -0.185 4.185 20 C -0.027 4.027 21 O -0.324 6.324 22 C -0.031 4.031 23 H 0.074 0.926 24 H 0.111 0.889 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.136 0.864 28 H 0.126 0.874 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.130 0.870 36 H 0.079 0.921 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.454 -11.131 2.335 13.598 hybrid contribution -0.280 1.134 0.528 1.282 sum 7.174 -9.996 2.863 12.633 Atomic orbital electron populations 1.69972 1.07139 1.27666 1.51130 1.25719 0.95689 1.02512 0.94505 0.85464 0.78990 0.79356 0.77624 1.19201 1.20250 1.20836 1.21272 0.93185 0.90413 1.50669 0.92217 1.19597 0.89650 0.89223 0.92780 1.00671 1.22749 0.96447 0.83455 0.96949 1.87866 1.35196 1.15747 1.95119 1.22811 0.92286 0.89956 0.96705 1.22951 0.97418 0.93587 0.97772 1.62471 1.20469 1.02233 1.40178 1.22139 0.94443 1.00116 0.87597 0.91460 1.21722 0.97236 0.96837 0.99082 1.22164 0.98463 1.03808 0.94039 1.22880 0.91484 0.88929 0.99396 1.87896 1.50577 1.48459 1.45459 1.23048 0.92482 1.00445 0.87157 0.92560 0.88880 0.95370 0.92694 0.86449 0.87352 0.95781 0.90561 0.90634 0.87633 0.91932 0.92303 0.87040 0.92107 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.92 11.38 21.45 0.24 -52.68 16 2 C 0.02 0.83 5.31 84.65 0.45 1.28 16 3 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.52 -28.34 7.93 25.60 0.20 -28.14 16 8 H 0.06 3.29 6.51 -2.91 -0.02 3.27 16 9 C 0.19 9.96 1.50 44.18 0.07 10.03 16 10 H -0.02 -1.39 6.50 -2.39 -0.02 -1.41 16 11 C 0.08 4.11 6.03 72.02 0.43 4.54 16 12 O -0.42 -19.03 10.83 -148.98 -1.61 -20.65 16 13 C 0.06 2.03 7.01 72.02 0.50 2.54 16 14 C 0.01 0.37 4.88 86.32 0.42 0.79 16 15 N -0.53 -22.08 4.56 -848.75 -3.87 -25.95 16 16 C 0.07 2.53 2.17 45.01 0.10 2.62 16 17 H 0.07 3.00 6.34 -2.39 -0.02 2.99 16 18 C -0.11 -3.07 5.06 30.71 0.16 -2.91 16 19 C -0.15 -3.36 6.14 30.68 0.19 -3.17 16 20 C 0.05 1.21 6.84 72.01 0.49 1.71 16 21 O -0.41 -14.60 10.76 -148.98 -1.60 -16.20 16 22 C 0.05 1.84 5.42 72.01 0.39 2.23 16 23 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 24 H 0.09 5.27 6.20 -2.39 -0.01 5.25 16 25 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.11 2.93 6.05 -2.39 -0.01 2.92 16 29 H 0.02 0.87 6.47 -2.39 -0.02 0.86 16 30 H 0.08 1.85 6.14 -2.38 -0.01 1.84 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.06 2.91 6.61 -2.39 -0.02 2.89 16 37 H 0.05 1.78 6.42 -2.39 -0.02 1.77 16 Total: -1.00 -63.50 277.35 -0.36 -63.85 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.05 Total: 14.15 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 3.40 Total: -8.48 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -3.63 Total: -78.63 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -3.22 Total: -36.85 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -63.50 -0.36 -63.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259750732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.445 kcal (2) G-P(sol) polarization free energy of solvation -63.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds