Wall clock time and date at job start Mon Mar 30 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09003 * 109.50806 * 60.36813 * 9 7 2 11 11 C 1.53095 * 109.51054 * 300.27980 * 9 7 2 12 12 O 1.43016 * 109.26100 * 183.21567 * 11 9 7 13 13 C 1.43017 * 113.73727 * 58.67010 * 12 11 9 14 14 C 1.53095 * 109.25764 * 301.32854 * 13 12 11 15 15 N 1.47016 * 109.25741 * 56.85296 * 14 13 12 16 16 C 1.46900 * 111.00200 * 177.60508 * 15 14 13 17 17 H 1.09002 * 109.52241 * 178.63149 * 16 15 14 18 18 C 1.53172 * 109.52268 * 298.76033 * 16 15 14 19 19 C 1.53181 * 109.03821 * 176.88409 * 18 16 15 20 20 C 1.53090 * 109.16202 * 303.02087 * 19 18 16 21 21 O 1.42899 * 109.41670 * 57.60415 * 20 19 18 22 22 C 1.42900 * 114.15592 * 298.87712 * 21 20 19 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.50724 * 303.15214 * 11 9 7 25 25 H 1.09001 * 109.50588 * 63.28212 * 11 9 7 26 26 H 1.08994 * 109.50662 * 61.26945 * 13 12 11 27 27 H 1.09001 * 109.50606 * 181.35487 * 13 12 11 28 28 H 1.09005 * 109.50517 * 176.78444 * 14 13 12 29 29 H 1.08993 * 109.51274 * 296.87090 * 14 13 12 30 30 H 1.09004 * 109.54519 * 296.75457 * 18 16 15 31 31 H 1.09001 * 109.54777 * 57.01469 * 18 16 15 32 32 H 1.09001 * 109.51815 * 62.92312 * 19 18 16 33 33 H 1.08998 * 109.52399 * 183.04789 * 19 18 16 34 34 H 1.09003 * 109.47994 * 177.59227 * 20 19 18 35 35 H 1.09002 * 109.47660 * 297.62085 * 20 19 18 36 36 H 1.09001 * 109.42788 * 301.10885 * 22 21 20 37 37 H 1.09006 * 109.53643 * 181.07433 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6254 -2.5621 -0.8849 11 6 0.3707 -2.5755 1.2555 12 8 -0.2841 -3.8464 1.2944 13 6 0.6160 -4.9577 1.3059 14 6 1.4989 -4.9054 0.0562 15 7 2.2059 -3.6170 0.0156 16 6 3.1092 -3.5484 -1.1408 17 1 3.6017 -2.5762 -1.1612 18 6 4.1636 -4.6542 -1.0331 19 6 5.0508 -4.6221 -2.2814 20 6 4.1728 -4.7758 -3.5260 21 8 3.1945 -3.7344 -3.5488 22 6 2.3060 -3.7421 -2.4297 23 1 -0.4850 0.8400 0.0004 24 1 0.9902 -2.4579 2.1447 25 1 -0.3760 -1.7822 1.2239 26 1 1.2425 -4.9094 2.1965 27 1 0.0467 -5.8872 1.3114 28 1 2.2247 -5.7180 0.0891 29 1 0.8773 -5.0084 -0.8332 30 1 4.7756 -4.4893 -0.1463 31 1 3.6697 -5.6233 -0.9616 32 1 5.5825 -3.6716 -2.3258 33 1 5.7698 -5.4401 -2.2384 34 1 4.7939 -4.7108 -4.4193 35 1 3.6725 -5.7439 -3.5006 36 1 1.7804 -4.6963 -2.3906 37 1 1.5831 -2.9327 -2.5326 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259750737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:40 Heat of formation + Delta-G solvation = -84.981915 kcal Electronic energy + Delta-G solvation = -18932.412017 eV Core-core repulsion = 16095.787004 eV Total energy + Delta-G solvation = -2836.625013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.65889 -37.91930 -35.08510 -33.28779 -32.41669 -29.93805 -29.44376 -25.92429 -25.03432 -24.61380 -22.53928 -22.18146 -19.94182 -18.72659 -16.72865 -16.07283 -15.69561 -15.39307 -15.00892 -14.73037 -14.40349 -13.94386 -13.74526 -13.59548 -13.04043 -12.81415 -12.45238 -12.27328 -12.05524 -11.24150 -11.02552 -10.92144 -10.84930 -10.64987 -10.64675 -10.43276 -10.11760 -9.87988 -9.56907 -9.33272 -9.08043 -8.68123 -8.39202 -7.22988 -6.13434 -4.17742 3.29045 3.33526 3.36249 4.17510 4.34148 4.73846 4.90311 5.10055 5.15216 5.21744 5.23096 5.42789 5.51181 5.66338 5.74131 5.79326 5.88568 5.92702 5.99193 6.04042 6.24591 6.27284 6.31100 6.40680 6.56229 6.71791 6.72190 6.92939 7.24583 7.43816 7.54460 7.67766 7.88013 8.13537 8.15984 8.49153 8.88145 9.47872 10.94428 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.010604 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.297279 B = 2639.823041 C = 3658.847407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.187 3.813 10 H 0.012 0.988 11 C 0.068 3.932 12 O -0.404 6.404 13 C 0.068 3.932 14 C 0.011 3.989 15 N -0.522 5.522 16 C 0.064 3.936 17 H 0.103 0.897 18 C -0.117 4.117 19 C -0.153 4.153 20 C 0.060 3.940 21 O -0.383 6.383 22 C 0.033 3.967 23 H 0.265 0.735 24 H 0.034 0.966 25 H 0.124 0.876 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.899 -9.398 -2.300 11.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.084 0.916 9 C 0.080 3.920 10 H 0.029 0.971 11 C -0.008 4.008 12 O -0.323 6.323 13 C -0.010 4.010 14 C -0.118 4.118 15 N -0.248 5.248 16 C -0.046 4.046 17 H 0.121 0.879 18 C -0.155 4.155 19 C -0.192 4.192 20 C -0.017 4.017 21 O -0.300 6.300 22 C -0.044 4.044 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.142 0.858 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.800 -9.093 -2.015 10.971 hybrid contribution 0.286 0.618 -0.497 0.843 sum 6.085 -8.474 -2.512 10.731 Atomic orbital electron populations 1.69821 1.05899 1.27189 1.50225 1.24965 0.94947 0.99384 0.94737 0.86513 0.79481 0.82478 0.78750 1.20120 1.21230 1.20139 1.20992 0.93331 0.89197 1.51183 0.91605 1.19883 0.89542 0.88129 0.94418 0.97065 1.23163 0.97585 0.82794 0.97304 1.87914 1.33819 1.15574 1.95001 1.22426 0.91973 0.90248 0.96365 1.22813 0.96733 0.94101 0.98155 1.62500 1.20898 1.02071 1.39307 1.22199 0.93832 1.00275 0.88260 0.87866 1.21716 0.97438 0.98745 0.97565 1.22181 0.98622 1.02603 0.95749 1.22514 0.90573 0.90700 0.97963 1.87924 1.45382 1.51969 1.44742 1.23396 0.92758 1.01465 0.86828 0.92480 0.94808 0.85845 0.93547 0.90378 0.91236 0.94957 0.91066 0.92419 0.91003 0.91432 0.89540 0.93943 0.94161 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.78 11.35 55.43 0.63 -24.15 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -13.47 7.88 -34.44 -0.27 -13.74 16 8 H 0.07 1.75 6.53 -52.49 -0.34 1.40 16 9 C 0.19 4.61 1.63 -68.75 -0.11 4.50 16 10 H 0.01 0.32 6.63 -51.93 -0.34 -0.02 16 11 C 0.07 1.67 6.02 37.21 0.22 1.89 16 12 O -0.40 -9.17 10.83 -35.23 -0.38 -9.55 16 13 C 0.07 1.24 7.01 37.21 0.26 1.50 16 14 C 0.01 0.19 4.86 -3.71 -0.02 0.18 16 15 N -0.52 -10.96 4.52 -219.62 -0.99 -11.96 16 16 C 0.06 1.22 2.18 -67.57 -0.15 1.07 16 17 H 0.10 2.25 6.17 -51.93 -0.32 1.93 16 18 C -0.12 -1.79 5.20 -26.55 -0.14 -1.93 16 19 C -0.15 -2.03 6.14 -26.59 -0.16 -2.19 16 20 C 0.06 0.82 6.84 37.20 0.25 1.08 16 21 O -0.38 -6.94 10.76 -35.23 -0.38 -7.32 16 22 C 0.03 0.64 5.43 37.21 0.20 0.84 16 23 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 24 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.12 3.33 6.16 -51.93 -0.32 3.01 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.09 6.16 -51.93 -0.32 0.77 16 29 H 0.03 0.61 6.37 -51.93 -0.33 0.28 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.83 6.24 -51.93 -0.32 0.51 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.73 6.31 -51.93 -0.33 0.40 16 37 H 0.10 2.25 6.71 -51.93 -0.35 1.90 16 LS Contribution 277.53 15.07 4.18 4.18 Total: -1.00 -28.13 277.53 -7.46 -35.59 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.49 Total: 2.51 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 0.00 Total: -5.24 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.36 Total: -36.10 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.76 Total: -16.87 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.13 -7.46 -35.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259750737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.395 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds