Wall clock time and date at job start Mon Mar 30 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09003 * 109.50806 * 60.36813 * 9 7 2 11 11 C 1.53095 * 109.51054 * 300.27980 * 9 7 2 12 12 O 1.43016 * 109.26100 * 183.21567 * 11 9 7 13 13 C 1.43017 * 113.73727 * 58.67010 * 12 11 9 14 14 C 1.53095 * 109.25764 * 301.32854 * 13 12 11 15 15 N 1.47016 * 109.25741 * 56.85296 * 14 13 12 16 16 C 1.46900 * 111.00200 * 177.60508 * 15 14 13 17 17 H 1.09002 * 109.52241 * 178.63149 * 16 15 14 18 18 C 1.53172 * 109.52268 * 298.76033 * 16 15 14 19 19 C 1.53181 * 109.03821 * 176.88409 * 18 16 15 20 20 C 1.53090 * 109.16202 * 303.02087 * 19 18 16 21 21 O 1.42899 * 109.41670 * 57.60415 * 20 19 18 22 22 C 1.42900 * 114.15592 * 298.87712 * 21 20 19 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.50724 * 303.15214 * 11 9 7 25 25 H 1.09001 * 109.50588 * 63.28212 * 11 9 7 26 26 H 1.08994 * 109.50662 * 61.26945 * 13 12 11 27 27 H 1.09001 * 109.50606 * 181.35487 * 13 12 11 28 28 H 1.09005 * 109.50517 * 176.78444 * 14 13 12 29 29 H 1.08993 * 109.51274 * 296.87090 * 14 13 12 30 30 H 1.09004 * 109.54519 * 296.75457 * 18 16 15 31 31 H 1.09001 * 109.54777 * 57.01469 * 18 16 15 32 32 H 1.09001 * 109.51815 * 62.92312 * 19 18 16 33 33 H 1.08998 * 109.52399 * 183.04789 * 19 18 16 34 34 H 1.09003 * 109.47994 * 177.59227 * 20 19 18 35 35 H 1.09002 * 109.47660 * 297.62085 * 20 19 18 36 36 H 1.09001 * 109.42788 * 301.10885 * 22 21 20 37 37 H 1.09006 * 109.53643 * 181.07433 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6254 -2.5621 -0.8849 11 6 0.3707 -2.5755 1.2555 12 8 -0.2841 -3.8464 1.2944 13 6 0.6160 -4.9577 1.3059 14 6 1.4989 -4.9054 0.0562 15 7 2.2059 -3.6170 0.0156 16 6 3.1092 -3.5484 -1.1408 17 1 3.6017 -2.5762 -1.1612 18 6 4.1636 -4.6542 -1.0331 19 6 5.0508 -4.6221 -2.2814 20 6 4.1728 -4.7758 -3.5260 21 8 3.1945 -3.7344 -3.5488 22 6 2.3060 -3.7421 -2.4297 23 1 -0.4850 0.8400 0.0004 24 1 0.9902 -2.4579 2.1447 25 1 -0.3760 -1.7822 1.2239 26 1 1.2425 -4.9094 2.1965 27 1 0.0467 -5.8872 1.3114 28 1 2.2247 -5.7180 0.0891 29 1 0.8773 -5.0084 -0.8332 30 1 4.7756 -4.4893 -0.1463 31 1 3.6697 -5.6233 -0.9616 32 1 5.5825 -3.6716 -2.3258 33 1 5.7698 -5.4401 -2.2384 34 1 4.7939 -4.7108 -4.4193 35 1 3.6725 -5.7439 -3.5006 36 1 1.7804 -4.6963 -2.3906 37 1 1.5831 -2.9327 -2.5326 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259750737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:40 Heat of formation + Delta-G solvation = -105.596278 kcal Electronic energy + Delta-G solvation = -18933.305923 eV Core-core repulsion = 16095.787004 eV Total energy + Delta-G solvation = -2837.518918 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.18174 -39.47296 -36.71797 -35.18521 -33.77029 -31.68869 -30.95945 -27.68746 -26.81052 -26.02495 -24.17596 -23.61809 -21.48501 -20.29517 -18.60108 -17.65141 -17.24084 -17.00363 -16.59383 -16.35667 -15.92855 -15.53599 -15.31044 -15.25639 -14.58896 -14.34502 -14.00079 -13.82002 -13.51537 -12.86661 -12.71446 -12.61306 -12.50786 -12.36002 -12.14306 -11.93386 -11.73736 -11.41426 -11.16228 -10.96095 -10.74799 -10.55948 -10.25107 -8.92594 -8.19466 -6.30489 1.41220 1.42287 1.50146 2.38069 2.83183 3.05483 3.17704 3.36538 3.81583 3.92396 4.03954 4.09404 4.15358 4.25517 4.39201 4.43878 4.51561 4.56574 4.66915 4.73205 4.78820 4.88152 4.92932 4.98097 5.04496 5.10748 5.21817 5.35109 5.43629 5.53227 5.63731 5.96269 6.15150 6.32075 6.46652 6.63651 6.82548 7.38591 8.87669 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.010604 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.297279 B = 2639.823041 C = 3658.847407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.196 3.804 10 H -0.026 1.026 11 C 0.081 3.919 12 O -0.420 6.420 13 C 0.059 3.941 14 C 0.011 3.989 15 N -0.527 5.527 16 C 0.064 3.936 17 H 0.068 0.932 18 C -0.109 4.109 19 C -0.147 4.147 20 C 0.050 3.950 21 O -0.406 6.406 22 C 0.046 3.954 23 H 0.266 0.734 24 H 0.028 0.972 25 H 0.094 0.906 26 H 0.055 0.945 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 -11.342 -2.356 13.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.558 4.558 8 H 0.078 0.922 9 C 0.088 3.912 10 H -0.009 1.009 11 C 0.004 3.996 12 O -0.339 6.339 13 C -0.018 4.018 14 C -0.117 4.117 15 N -0.253 5.253 16 C -0.046 4.046 17 H 0.086 0.914 18 C -0.146 4.146 19 C -0.185 4.185 20 C -0.026 4.026 21 O -0.324 6.324 22 C -0.032 4.032 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.112 0.888 26 H 0.073 0.927 27 H 0.136 0.864 28 H 0.125 0.875 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.615 -11.063 -2.072 13.589 hybrid contribution -0.253 1.119 -0.523 1.260 sum 7.362 -9.944 -2.595 12.642 Atomic orbital electron populations 1.69956 1.07161 1.27819 1.50959 1.25726 0.95696 1.02534 0.94449 0.85567 0.78329 0.78697 0.78835 1.19946 1.20782 1.19354 1.21228 0.93196 0.90458 1.50946 0.92162 1.19576 0.89638 0.89248 0.92693 1.00887 1.22756 0.96485 0.83497 0.96879 1.87868 1.35177 1.15778 1.95096 1.22807 0.92270 0.89979 0.96702 1.22937 0.97424 0.93529 0.97826 1.62469 1.20253 1.02248 1.40301 1.22172 0.94294 1.00423 0.87669 0.91361 1.21676 0.96468 0.97557 0.98939 1.22170 0.98595 1.03640 0.94121 1.22875 0.90065 0.90183 0.99490 1.87888 1.46276 1.54100 1.44141 1.23057 0.92451 1.00332 0.87355 0.92527 0.95414 0.88797 0.92718 0.86444 0.87477 0.95661 0.90836 0.90599 0.92028 0.87659 0.87055 0.92173 0.92843 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.00 11.35 21.45 0.24 -52.75 16 2 C 0.02 0.84 5.30 84.65 0.45 1.29 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.52 -28.54 7.88 25.60 0.20 -28.34 16 8 H 0.06 3.30 6.53 -2.91 -0.02 3.28 16 9 C 0.20 10.04 1.63 44.18 0.07 10.11 16 10 H -0.03 -1.53 6.63 -2.39 -0.02 -1.54 16 11 C 0.08 4.11 6.02 72.01 0.43 4.54 16 12 O -0.42 -19.06 10.83 -148.98 -1.61 -20.68 16 13 C 0.06 2.04 7.01 72.01 0.50 2.54 16 14 C 0.01 0.37 4.86 86.31 0.42 0.79 16 15 N -0.53 -22.07 4.52 -848.76 -3.84 -25.91 16 16 C 0.06 2.43 2.18 45.00 0.10 2.53 16 17 H 0.07 3.07 6.17 -2.39 -0.01 3.05 16 18 C -0.11 -3.02 5.20 30.71 0.16 -2.87 16 19 C -0.15 -3.39 6.14 30.68 0.19 -3.20 16 20 C 0.05 1.22 6.84 72.01 0.49 1.71 16 21 O -0.41 -14.46 10.76 -148.98 -1.60 -16.07 16 22 C 0.05 1.79 5.43 72.01 0.39 2.18 16 23 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 24 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.09 5.32 6.16 -2.39 -0.01 5.31 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.11 2.91 6.16 -2.38 -0.01 2.89 16 29 H 0.03 0.92 6.37 -2.39 -0.02 0.90 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 1.85 6.24 -2.39 -0.01 1.83 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 34 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.89 6.31 -2.39 -0.02 1.87 16 37 H 0.06 2.74 6.71 -2.38 -0.02 2.72 16 Total: -1.00 -63.50 277.53 -0.32 -63.82 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.05 Total: 14.42 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 3.41 Total: -8.69 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -3.59 Total: -78.66 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -3.22 Total: -36.75 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -63.50 -0.32 -63.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259750737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.772 kcal (2) G-P(sol) polarization free energy of solvation -63.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds