Wall clock time and date at job start Mon Mar 30 2020 03:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99844 * 2 1 4 4 H 1.48498 * 109.47205 * 240.00119 * 3 2 1 5 5 H 1.48507 * 109.47020 * 120.00579 * 3 2 1 6 6 H 1.48501 * 109.47323 * 0.02562 * 3 2 1 7 7 C 1.37870 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00490 * 175.20026 * 7 2 1 9 9 C 1.50705 * 119.99816 * 355.19261 * 7 2 1 10 10 H 1.09002 * 109.50231 * 35.13571 * 9 7 2 11 11 C 1.53095 * 109.50849 * 275.00248 * 9 7 2 12 12 O 1.43019 * 109.25808 * 183.21788 * 11 9 7 13 13 C 1.43018 * 113.73649 * 58.66822 * 12 11 9 14 14 C 1.53094 * 109.25866 * 301.32985 * 13 12 11 15 15 N 1.47013 * 109.26127 * 56.85185 * 14 13 12 16 16 C 1.46897 * 111.00334 * 177.60699 * 15 14 13 17 17 C 1.53183 * 109.54304 * 63.18935 * 16 15 14 18 18 C 1.53089 * 109.16121 * 183.15207 * 17 16 15 19 19 O 1.42907 * 109.41542 * 57.60990 * 18 17 16 20 20 C 1.42894 * 114.09676 * 298.83865 * 19 18 17 21 21 C 1.53098 * 109.41514 * 61.16004 * 20 19 18 22 22 H 0.96996 * 120.00140 * 185.22539 * 1 2 3 23 23 H 1.09003 * 109.50376 * 303.14481 * 11 9 7 24 24 H 1.08998 * 109.50802 * 63.28058 * 11 9 7 25 25 H 1.09005 * 109.50188 * 181.39634 * 13 12 11 26 26 H 1.08995 * 109.51147 * 61.26568 * 13 12 11 27 27 H 1.09004 * 109.50836 * 296.91480 * 14 13 12 28 28 H 1.09000 * 109.54289 * 176.81029 * 14 13 12 29 29 H 1.08993 * 109.54420 * 183.45620 * 16 15 14 30 30 H 1.08994 * 109.51960 * 303.06121 * 17 16 15 31 31 H 1.09002 * 109.51728 * 63.24846 * 17 16 15 32 32 H 1.08999 * 109.48119 * 297.62463 * 18 17 16 33 33 H 1.09003 * 109.47892 * 177.59064 * 18 17 16 34 34 H 1.08994 * 109.48387 * 301.17342 * 20 19 18 35 35 H 1.09008 * 109.48245 * 181.13820 * 20 19 18 36 36 H 1.09000 * 109.52432 * 182.48177 * 21 20 19 37 37 H 1.08999 * 109.57342 * 62.32418 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 3.1030 1.6964 1.2125 6 1 1.2841 2.7465 0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1956 -0.0788 9 6 1.2550 -2.4969 0.1083 10 1 0.3046 -2.4151 -0.4193 11 6 0.9962 -2.8162 1.5830 12 8 0.3517 -4.0889 1.6840 13 6 1.1049 -5.1626 1.1136 14 6 1.3647 -4.8669 -0.3659 15 7 2.0564 -3.5755 -0.4882 16 6 2.3756 -3.2800 -1.8913 17 6 1.0783 -3.1440 -2.6943 18 6 1.4215 -2.9146 -4.1685 19 8 2.2234 -3.9979 -4.6437 20 6 3.4703 -4.1439 -3.9613 21 6 3.2094 -4.4228 -2.4787 22 1 -0.4850 -0.8365 0.0765 23 1 1.9439 -2.8446 2.1209 24 1 0.3547 -2.0480 2.0147 25 1 0.5418 -6.0914 1.2057 26 1 2.0556 -5.2591 1.6378 27 1 0.4157 -4.8236 -0.9006 28 1 1.9865 -5.6546 -0.7914 29 1 2.9406 -2.3496 -1.9485 30 1 0.4910 -4.0568 -2.5948 31 1 0.5040 -2.2974 -2.3180 32 1 1.9740 -1.9807 -4.2720 33 1 0.5022 -2.8598 -4.7515 34 1 4.0496 -3.2262 -4.0621 35 1 4.0269 -4.9748 -4.3949 36 1 4.1591 -4.4908 -1.9482 37 1 2.6656 -5.3616 -2.3739 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259753945.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:56 Heat of formation + Delta-G solvation = -90.477270 kcal Electronic energy + Delta-G solvation = -19019.501358 eV Core-core repulsion = 16182.638049 eV Total energy + Delta-G solvation = -2836.863309 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.70772 -38.11124 -35.41690 -33.43303 -31.11777 -30.76754 -29.83391 -26.36794 -24.91599 -23.48964 -22.86145 -22.31659 -20.31547 -18.76167 -17.02655 -16.07100 -15.72280 -15.46489 -15.10044 -14.75596 -14.30846 -14.07005 -13.83569 -13.66846 -13.38695 -13.06122 -12.71832 -11.91046 -11.63473 -11.37035 -11.18752 -11.03101 -10.87702 -10.60728 -10.41678 -10.38132 -10.16928 -10.03095 -9.57708 -9.25128 -9.13796 -8.52320 -8.45680 -7.33875 -6.46394 -4.21039 3.36595 3.38771 3.57320 4.13029 4.39913 4.56374 4.71855 5.16269 5.23357 5.25036 5.35432 5.49963 5.58957 5.62597 5.70598 5.74299 5.80278 5.91178 5.96594 6.11196 6.21603 6.24391 6.30802 6.35708 6.43282 6.54639 6.63183 6.76551 6.96995 7.16279 7.45667 7.57302 7.87666 7.95977 8.25782 8.46904 8.74883 9.51238 10.89135 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017748 B = 0.011412 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.251841 B = 2453.028574 C = 3538.088190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 1.068 2.932 4 H -0.288 1.288 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.587 4.587 8 H 0.058 0.942 9 C 0.169 3.831 10 H 0.018 0.982 11 C 0.070 3.930 12 O -0.405 6.405 13 C 0.070 3.930 14 C 0.010 3.990 15 N -0.522 5.522 16 C 0.101 3.899 17 C -0.183 4.183 18 C 0.068 3.932 19 O -0.391 6.391 20 C 0.064 3.936 21 C -0.153 4.153 22 H 0.270 0.730 23 H 0.044 0.956 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.592 -7.431 -4.339 9.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.182 4.182 3 Si 0.896 3.104 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.625 4.625 8 H 0.076 0.924 9 C 0.062 3.938 10 H 0.036 0.964 11 C -0.007 4.007 12 O -0.324 6.324 13 C -0.008 4.008 14 C -0.119 4.119 15 N -0.246 5.246 16 C -0.007 4.007 17 C -0.222 4.222 18 C -0.010 4.010 19 O -0.310 6.310 20 C -0.013 4.013 21 C -0.191 4.191 22 H 0.082 0.918 23 H 0.062 0.938 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.591 -5.951 -4.175 8.598 hybrid contribution -0.254 -1.411 -0.179 1.445 sum 4.338 -7.362 -4.354 9.590 Atomic orbital electron populations 1.70814 1.06806 1.31047 1.45578 1.25846 0.96420 1.02588 0.93374 0.83551 0.74913 0.75283 0.76687 1.21439 1.21261 1.20783 1.21746 0.94948 0.90221 1.55606 0.92412 1.20053 0.93037 0.89840 0.90854 0.96447 1.23144 0.96234 0.82335 0.98964 1.87873 1.46826 1.17534 1.80154 1.22458 0.95735 0.90165 0.92441 1.22825 0.97399 0.94453 0.97181 1.62500 1.45106 1.01841 1.15171 1.21503 0.94329 0.98188 0.86713 1.22785 1.00648 1.02844 0.95950 1.22511 0.94682 0.89141 0.94623 1.87846 1.30990 1.52425 1.59739 1.22525 0.85861 1.00907 0.92021 1.22372 1.01334 0.99611 0.95744 0.91843 0.93786 0.89600 0.90083 0.93390 0.94938 0.90968 0.88695 0.92241 0.89651 0.93053 0.89572 0.93273 0.89446 0.90703 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.90 13.63 55.43 0.76 -25.14 16 2 C 0.02 0.62 5.45 -17.82 -0.10 0.52 16 3 Si 1.07 24.04 29.91 -169.99 -5.08 18.96 16 4 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.59 -15.33 7.12 -34.44 -0.25 -15.58 16 8 H 0.06 1.54 7.57 -52.49 -0.40 1.15 16 9 C 0.17 4.08 1.24 -68.75 -0.09 3.99 16 10 H 0.02 0.48 5.06 -51.93 -0.26 0.21 16 11 C 0.07 1.64 6.27 37.21 0.23 1.87 16 12 O -0.40 -8.83 10.83 -35.23 -0.38 -9.21 16 13 C 0.07 1.25 7.01 37.21 0.26 1.51 16 14 C 0.01 0.18 4.87 -3.71 -0.02 0.17 16 15 N -0.52 -10.95 4.56 -219.57 -1.00 -11.95 16 16 C 0.10 1.95 2.07 -67.53 -0.14 1.81 16 17 C -0.18 -3.48 4.70 -26.59 -0.12 -3.60 16 18 C 0.07 1.12 6.84 37.20 0.25 1.37 16 19 O -0.39 -6.41 10.77 -35.23 -0.38 -6.79 16 20 C 0.06 0.91 6.84 37.21 0.25 1.17 16 21 C -0.15 -2.39 5.17 -26.59 -0.14 -2.53 16 22 H 0.27 7.80 6.66 -40.82 -0.27 7.53 16 23 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.03 0.63 6.45 -51.93 -0.34 0.30 16 28 H 0.07 1.16 6.05 -51.93 -0.31 0.85 16 29 H 0.10 2.05 6.87 -51.93 -0.36 1.69 16 30 H 0.06 1.12 6.39 -51.93 -0.33 0.79 16 31 H 0.08 1.90 6.66 -51.93 -0.35 1.56 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.02 6.14 -51.93 -0.32 0.70 16 LS Contribution 279.74 15.07 4.22 4.22 Total: -1.00 -28.49 279.74 -7.25 -35.74 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.53 Total: 3.46 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 0.15 Total: -9.29 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.25 Total: -37.09 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.76 Total: -16.00 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.08 Total: 18.96 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.49 -7.25 -35.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259753945.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.734 kcal (2) G-P(sol) polarization free energy of solvation -28.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds