Wall clock time and date at job start Mon Mar 30 2020 03:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99844 * 2 1 4 4 H 1.48498 * 109.47205 * 240.00119 * 3 2 1 5 5 H 1.48507 * 109.47020 * 120.00579 * 3 2 1 6 6 H 1.48501 * 109.47323 * 0.02562 * 3 2 1 7 7 C 1.37870 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00490 * 175.20026 * 7 2 1 9 9 C 1.50705 * 119.99816 * 355.19261 * 7 2 1 10 10 H 1.09002 * 109.50231 * 35.13571 * 9 7 2 11 11 C 1.53095 * 109.50849 * 275.00248 * 9 7 2 12 12 O 1.43019 * 109.25808 * 183.21788 * 11 9 7 13 13 C 1.43018 * 113.73649 * 58.66822 * 12 11 9 14 14 C 1.53094 * 109.25866 * 301.32985 * 13 12 11 15 15 N 1.47013 * 109.26127 * 56.85185 * 14 13 12 16 16 C 1.46897 * 111.00334 * 177.60699 * 15 14 13 17 17 C 1.53183 * 109.54304 * 63.18935 * 16 15 14 18 18 C 1.53089 * 109.16121 * 183.15207 * 17 16 15 19 19 O 1.42907 * 109.41542 * 57.60990 * 18 17 16 20 20 C 1.42894 * 114.09676 * 298.83865 * 19 18 17 21 21 C 1.53098 * 109.41514 * 61.16004 * 20 19 18 22 22 H 0.96996 * 120.00140 * 185.22539 * 1 2 3 23 23 H 1.09003 * 109.50376 * 303.14481 * 11 9 7 24 24 H 1.08998 * 109.50802 * 63.28058 * 11 9 7 25 25 H 1.09005 * 109.50188 * 181.39634 * 13 12 11 26 26 H 1.08995 * 109.51147 * 61.26568 * 13 12 11 27 27 H 1.09004 * 109.50836 * 296.91480 * 14 13 12 28 28 H 1.09000 * 109.54289 * 176.81029 * 14 13 12 29 29 H 1.08993 * 109.54420 * 183.45620 * 16 15 14 30 30 H 1.08994 * 109.51960 * 303.06121 * 17 16 15 31 31 H 1.09002 * 109.51728 * 63.24846 * 17 16 15 32 32 H 1.08999 * 109.48119 * 297.62463 * 18 17 16 33 33 H 1.09003 * 109.47892 * 177.59064 * 18 17 16 34 34 H 1.08994 * 109.48387 * 301.17342 * 20 19 18 35 35 H 1.09008 * 109.48245 * 181.13820 * 20 19 18 36 36 H 1.09000 * 109.52432 * 182.48177 * 21 20 19 37 37 H 1.08999 * 109.57342 * 62.32418 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 3.1030 1.6964 1.2125 6 1 1.2841 2.7465 0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1956 -0.0788 9 6 1.2550 -2.4969 0.1083 10 1 0.3046 -2.4151 -0.4193 11 6 0.9962 -2.8162 1.5830 12 8 0.3517 -4.0889 1.6840 13 6 1.1049 -5.1626 1.1136 14 6 1.3647 -4.8669 -0.3659 15 7 2.0564 -3.5755 -0.4882 16 6 2.3756 -3.2800 -1.8913 17 6 1.0783 -3.1440 -2.6943 18 6 1.4215 -2.9146 -4.1685 19 8 2.2234 -3.9979 -4.6437 20 6 3.4703 -4.1439 -3.9613 21 6 3.2094 -4.4228 -2.4787 22 1 -0.4850 -0.8365 0.0765 23 1 1.9439 -2.8446 2.1209 24 1 0.3547 -2.0480 2.0147 25 1 0.5418 -6.0914 1.2057 26 1 2.0556 -5.2591 1.6378 27 1 0.4157 -4.8236 -0.9006 28 1 1.9865 -5.6546 -0.7914 29 1 2.9406 -2.3496 -1.9485 30 1 0.4910 -4.0568 -2.5948 31 1 0.5040 -2.2974 -2.3180 32 1 1.9740 -1.9807 -4.2720 33 1 0.5022 -2.8598 -4.7515 34 1 4.0496 -3.2262 -4.0621 35 1 4.0269 -4.9748 -4.3949 36 1 4.1591 -4.4908 -1.9482 37 1 2.6656 -5.3616 -2.3739 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259753945.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:56 Heat of formation + Delta-G solvation = -111.171716 kcal Electronic energy + Delta-G solvation = -19020.398736 eV Core-core repulsion = 16182.638049 eV Total energy + Delta-G solvation = -2837.760688 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.25206 -39.61439 -37.02493 -35.37401 -32.61271 -32.15802 -31.58377 -28.00470 -26.85893 -24.93233 -24.32951 -23.98502 -21.94499 -20.36399 -18.88356 -17.60904 -17.14535 -17.03166 -16.65863 -16.40212 -15.90103 -15.67919 -15.51814 -15.28598 -14.97671 -14.53076 -14.24923 -13.50896 -13.26973 -13.16339 -12.80663 -12.70377 -12.42786 -12.11008 -12.05310 -11.95416 -11.80363 -11.64028 -11.11021 -10.90925 -10.64560 -10.51647 -10.33597 -9.07699 -8.60804 -6.36204 1.53020 1.59282 1.78739 2.53058 2.86276 2.93174 3.10944 3.19623 3.77522 3.85908 4.01767 4.08978 4.15327 4.22606 4.28750 4.32107 4.39859 4.45122 4.60342 4.64957 4.70122 4.71197 4.80242 4.82204 4.89342 4.97616 5.07583 5.10322 5.27598 5.38204 5.74583 5.95804 6.18937 6.26002 6.36557 6.43653 6.67547 7.43836 8.73324 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017748 B = 0.011412 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.251841 B = 2453.028574 C = 3538.088190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.022 4.022 3 Si 1.110 2.890 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.288 1.288 7 C -0.585 4.585 8 H 0.050 0.950 9 C 0.175 3.825 10 H -0.016 1.016 11 C 0.081 3.919 12 O -0.418 6.418 13 C 0.062 3.938 14 C 0.011 3.989 15 N -0.528 5.528 16 C 0.099 3.901 17 C -0.173 4.173 18 C 0.074 3.926 19 O -0.395 6.395 20 C 0.061 3.939 21 C -0.141 4.141 22 H 0.255 0.745 23 H 0.044 0.956 24 H 0.062 0.938 25 H 0.119 0.881 26 H 0.059 0.941 27 H 0.019 0.981 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.305 -8.930 -5.099 12.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.222 4.222 3 Si 0.933 3.067 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.213 1.213 7 C -0.624 4.624 8 H 0.069 0.931 9 C 0.068 3.932 10 H 0.002 0.998 11 C 0.004 3.996 12 O -0.337 6.337 13 C -0.014 4.014 14 C -0.117 4.117 15 N -0.251 5.251 16 C -0.010 4.010 17 C -0.213 4.213 18 C -0.003 4.003 19 O -0.314 6.314 20 C -0.016 4.016 21 C -0.179 4.179 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.140 0.860 36 H 0.105 0.895 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.324 -7.487 -4.942 10.976 hybrid contribution -0.769 -1.058 0.055 1.309 sum 5.555 -8.545 -4.887 11.303 Atomic orbital electron populations 1.70929 1.07816 1.30149 1.48050 1.27126 0.96379 1.05990 0.92665 0.83005 0.74164 0.71628 0.77934 1.19663 1.19584 1.21322 1.21920 0.94558 0.91369 1.54513 0.93130 1.19820 0.91710 0.90544 0.91175 0.99819 1.22799 0.95618 0.83048 0.98162 1.87846 1.47672 1.17543 1.80664 1.22818 0.96688 0.90079 0.91854 1.22927 0.97218 0.93792 0.97737 1.62463 1.44447 1.01967 1.16253 1.21529 0.94552 0.98785 0.86151 1.22634 1.00026 1.00871 0.97727 1.22428 0.95576 0.89367 0.92943 1.87851 1.31740 1.51966 1.59834 1.22752 0.85254 1.02593 0.90971 1.22305 1.01051 0.97915 0.96662 0.93438 0.93725 0.91977 0.86354 0.92283 0.96234 0.87687 0.91568 0.92260 0.93993 0.93227 0.88137 0.92856 0.85970 0.89503 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.36 13.63 21.44 0.29 -55.06 16 2 C -0.02 -1.23 5.45 84.65 0.46 -0.76 16 3 Si 1.11 48.75 29.91 68.60 2.05 50.81 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.59 -31.35 7.12 25.60 0.18 -31.16 16 8 H 0.05 2.74 7.57 -2.91 -0.02 2.71 16 9 C 0.18 8.71 1.24 44.18 0.05 8.77 16 10 H -0.02 -0.88 5.06 -2.39 -0.01 -0.90 16 11 C 0.08 3.88 6.27 72.01 0.45 4.33 16 12 O -0.42 -18.12 10.83 -148.98 -1.61 -19.73 16 13 C 0.06 2.09 7.01 72.01 0.50 2.60 16 14 C 0.01 0.40 4.87 86.31 0.42 0.82 16 15 N -0.53 -21.91 4.56 -848.60 -3.87 -25.78 16 16 C 0.10 3.75 2.07 45.04 0.09 3.84 16 17 C -0.17 -6.66 4.70 30.69 0.14 -6.52 16 18 C 0.07 2.40 6.84 72.01 0.49 2.89 16 19 O -0.39 -11.93 10.77 -148.98 -1.60 -13.54 16 20 C 0.06 1.54 6.84 72.01 0.49 2.03 16 21 C -0.14 -4.03 5.17 30.69 0.16 -3.87 16 22 H 0.26 15.60 6.66 -92.71 -0.62 14.99 16 23 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 25 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.02 0.74 6.45 -2.39 -0.02 0.73 16 28 H 0.11 3.00 6.05 -2.39 -0.01 2.99 16 29 H 0.07 2.89 6.87 -2.39 -0.02 2.87 16 30 H 0.06 2.24 6.39 -2.39 -0.02 2.23 16 31 H 0.04 1.97 6.66 -2.39 -0.02 1.95 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 2.01 6.14 -2.39 -0.01 2.00 16 Total: -1.00 -62.99 279.74 -0.08 -63.07 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.20 Total: 17.27 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 3.46 Total: -17.04 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -3.58 Total: -80.84 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -3.22 Total: -33.27 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.05 Total: 50.81 kcal Total: -62.99 -0.08 -63.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259753945.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.101 kcal (2) G-P(sol) polarization free energy of solvation -62.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds