Wall clock time and date at job start Mon Mar 30 2020 04:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47173 * 2 1 4 4 C 1.50694 * 109.47119 * 239.99850 * 2 1 3 5 5 H 1.07996 * 120.00432 * 239.99633 * 4 2 1 6 6 C 1.37881 * 119.99942 * 60.00022 * 4 2 1 7 7 N 1.31515 * 119.99954 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00035 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47262 * 59.99989 * 8 6 4 10 10 H 1.48502 * 109.47042 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47180 * 299.99706 * 8 6 4 12 12 N 1.46503 * 109.46919 * 119.99824 * 2 1 3 13 13 C 1.34772 * 120.00215 * 299.99580 * 12 2 1 14 14 O 1.21277 * 119.99996 * 0.02562 * 13 12 2 15 15 C 1.50705 * 120.00191 * 180.02562 * 13 12 2 16 16 C 1.53175 * 109.53841 * 60.44820 * 15 13 12 17 17 C 1.53092 * 109.16179 * 176.85093 * 16 15 13 18 18 O 1.42910 * 109.41107 * 302.39040 * 17 16 15 19 19 C 1.42900 * 114.09727 * 61.16189 * 18 17 16 20 20 C 1.53090 * 109.41229 * 298.83586 * 19 18 17 21 21 H 1.09000 * 109.47143 * 300.00004 * 1 2 3 22 22 H 1.09001 * 109.47261 * 59.99788 * 1 2 3 23 23 H 1.09004 * 109.46959 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47491 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47200 * 300.00249 * 3 2 1 26 26 H 1.09000 * 109.47090 * 59.99963 * 3 2 1 27 27 H 0.97004 * 120.00203 * 179.97438 * 7 6 4 28 28 H 0.97001 * 119.99668 * 120.00543 * 12 2 1 29 29 H 1.08997 * 109.61189 * 300.23184 * 15 13 12 30 30 H 1.09006 * 109.52647 * 296.75393 * 16 15 13 31 31 H 1.08998 * 109.52537 * 56.94285 * 16 15 13 32 32 H 1.08998 * 109.48147 * 182.40843 * 17 16 15 33 33 H 1.08997 * 109.48550 * 62.37144 * 17 16 15 34 34 H 1.09003 * 109.47953 * 178.86010 * 19 18 17 35 35 H 1.08995 * 109.49265 * 58.82602 * 19 18 17 36 36 H 1.09001 * 109.52724 * 297.70937 * 20 19 18 37 37 H 1.09000 * 109.52338 * 177.51272 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 1.6928 -0.2301 2.4203 14 8 0.9953 0.7557 2.5316 15 6 2.1956 -0.9402 3.6508 16 6 3.7273 -0.9308 3.6578 17 6 4.2279 -1.5840 4.9487 18 8 3.6924 -0.8843 6.0738 19 6 2.2653 -0.9001 6.1454 20 6 1.6858 -0.2194 4.9026 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 0.7087 1.1613 -3.4844 28 1 2.5760 -1.4792 1.1072 29 1 1.8373 -1.9695 3.6513 30 1 4.0990 -1.4897 2.7989 31 1 4.0855 0.0974 3.6072 32 1 5.3167 -1.5418 4.9789 33 1 3.9034 -2.6241 4.9794 34 1 1.9402 -0.3652 7.0377 35 1 1.9149 -1.9312 6.1918 36 1 2.0028 0.8232 4.8771 37 1 0.5974 -0.2696 4.9339 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259755615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:02 Heat of formation + Delta-G solvation = -97.691843 kcal Electronic energy + Delta-G solvation = -18283.343916 eV Core-core repulsion = 15446.167760 eV Total energy + Delta-G solvation = -2837.176156 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89856 -38.33500 -35.37609 -33.51757 -32.34214 -31.05309 -29.52926 -25.58944 -25.54716 -25.27064 -23.47114 -21.40323 -19.89736 -18.56059 -17.39912 -16.06422 -15.97069 -15.54688 -15.07773 -14.81038 -14.51059 -13.92802 -13.57167 -13.19735 -12.76902 -12.36991 -12.33502 -11.89595 -11.45226 -11.30941 -11.23077 -11.05745 -11.02475 -10.65034 -10.46630 -10.40721 -10.25179 -10.18480 -9.74058 -9.69053 -9.06703 -8.52276 -8.43545 -7.83859 -6.08519 -4.21250 3.24096 3.29850 3.30658 3.43087 3.83551 4.10605 4.38118 4.75722 4.88598 4.98241 5.11494 5.18760 5.20558 5.41743 5.48532 5.63830 5.67739 5.75219 5.93001 6.08324 6.21496 6.40719 6.75831 6.94875 7.03454 7.15034 7.29279 7.33476 7.62317 7.64632 7.64908 7.82713 8.04567 8.29105 8.69480 8.84510 9.20003 9.47636 10.92739 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042343 B = 0.005913 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.104743 B = 4734.451430 C = 5118.093173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.291 3.709 3 C -0.146 4.146 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.069 3.931 7 N -0.879 5.879 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.707 5.707 13 C 0.507 3.493 14 O -0.547 6.547 15 C -0.113 4.113 16 C -0.146 4.146 17 C 0.063 3.937 18 O -0.386 6.386 19 C 0.061 3.939 20 C -0.133 4.133 21 H 0.034 0.966 22 H 0.087 0.913 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.086 0.914 26 H 0.034 0.966 27 H 0.264 0.736 28 H 0.386 0.614 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.034 -5.426 11.795 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.208 3.792 3 C -0.204 4.204 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.517 5.517 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.355 5.355 13 C 0.292 3.708 14 O -0.426 6.426 15 C -0.135 4.135 16 C -0.184 4.184 17 C -0.013 4.013 18 O -0.305 6.305 19 C -0.016 4.016 20 C -0.171 4.171 21 H 0.053 0.947 22 H 0.105 0.895 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.105 0.895 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.218 0.782 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.549 -4.491 11.808 13.122 hybrid contribution 0.420 -1.081 -1.256 1.709 sum 3.969 -5.572 10.552 12.576 Atomic orbital electron populations 1.22075 0.97507 0.98986 1.01905 1.18106 0.91204 0.89674 0.80172 1.22066 0.97936 0.98530 1.01876 1.21093 1.32612 1.12604 0.90200 0.92365 1.24820 0.94738 0.94922 0.98879 1.69833 1.35788 1.22360 1.23681 0.86528 0.79097 0.79618 0.81937 1.20261 1.21134 1.20253 1.46645 1.51599 1.30901 1.06305 1.20265 0.80963 0.84942 0.84672 1.90601 1.38673 1.26599 1.86770 1.21413 0.96415 1.00758 0.94888 1.22172 0.94281 1.03151 0.98818 1.22577 0.98842 0.94671 0.85249 1.87911 1.20593 1.76035 1.45918 1.22633 0.80843 0.99743 0.98344 1.21970 1.01427 1.00952 0.92775 0.94664 0.89478 0.96079 0.96066 0.89505 0.94678 0.92613 0.78157 0.89306 0.90221 0.90458 0.88782 0.93157 0.88837 0.93352 0.90230 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 8.18 37.16 0.30 -3.43 16 2 C 0.29 7.21 0.78 -132.97 -0.10 7.11 16 3 C -0.15 -3.73 8.18 37.16 0.30 -3.42 16 4 C -0.53 -13.67 8.18 -34.44 -0.28 -13.95 16 5 H 0.06 1.45 7.60 -52.49 -0.40 1.05 16 6 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 7 N -0.88 -23.96 9.35 55.43 0.52 -23.44 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.71 -14.59 5.01 -48.68 -0.24 -14.83 16 13 C 0.51 9.93 6.58 -10.98 -0.07 9.86 16 14 O -0.55 -12.70 12.18 5.56 0.07 -12.63 16 15 C -0.11 -1.64 2.61 -91.59 -0.24 -1.88 16 16 C -0.15 -1.85 5.30 -26.59 -0.14 -1.99 16 17 C 0.06 0.69 6.84 37.21 0.25 0.94 16 18 O -0.39 -4.92 10.77 -35.23 -0.38 -5.30 16 19 C 0.06 0.69 6.84 37.20 0.25 0.94 16 20 C -0.13 -1.83 4.73 -26.59 -0.13 -1.95 16 21 H 0.03 0.89 6.17 -51.93 -0.32 0.57 16 22 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 23 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.89 6.17 -51.93 -0.32 0.57 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.39 6.99 7.84 -40.82 -0.32 6.67 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 0.93 7.70 -51.93 -0.40 0.53 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 1.24 8.02 -51.93 -0.42 0.82 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 288.75 15.07 4.35 4.35 Total: -1.00 -29.69 288.75 -6.39 -36.08 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.75 Total: 6.48 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 0.06 Total: -6.04 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.27 Total: -38.27 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.31 Total: -17.92 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.69 -6.39 -36.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259755615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.615 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds