Wall clock time and date at job start Mon Mar 30 2020 04:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47173 * 2 1 4 4 C 1.50694 * 109.47119 * 239.99850 * 2 1 3 5 5 H 1.07996 * 120.00432 * 239.99633 * 4 2 1 6 6 C 1.37881 * 119.99942 * 60.00022 * 4 2 1 7 7 N 1.31515 * 119.99954 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00035 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47262 * 59.99989 * 8 6 4 10 10 H 1.48502 * 109.47042 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47180 * 299.99706 * 8 6 4 12 12 N 1.46503 * 109.46919 * 119.99824 * 2 1 3 13 13 C 1.34772 * 120.00215 * 299.99580 * 12 2 1 14 14 O 1.21277 * 119.99996 * 0.02562 * 13 12 2 15 15 C 1.50705 * 120.00191 * 180.02562 * 13 12 2 16 16 C 1.53175 * 109.53841 * 60.44820 * 15 13 12 17 17 C 1.53092 * 109.16179 * 176.85093 * 16 15 13 18 18 O 1.42910 * 109.41107 * 302.39040 * 17 16 15 19 19 C 1.42900 * 114.09727 * 61.16189 * 18 17 16 20 20 C 1.53090 * 109.41229 * 298.83586 * 19 18 17 21 21 H 1.09000 * 109.47143 * 300.00004 * 1 2 3 22 22 H 1.09001 * 109.47261 * 59.99788 * 1 2 3 23 23 H 1.09004 * 109.46959 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47491 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47200 * 300.00249 * 3 2 1 26 26 H 1.09000 * 109.47090 * 59.99963 * 3 2 1 27 27 H 0.97004 * 120.00203 * 179.97438 * 7 6 4 28 28 H 0.97001 * 119.99668 * 120.00543 * 12 2 1 29 29 H 1.08997 * 109.61189 * 300.23184 * 15 13 12 30 30 H 1.09006 * 109.52647 * 296.75393 * 16 15 13 31 31 H 1.08998 * 109.52537 * 56.94285 * 16 15 13 32 32 H 1.08998 * 109.48147 * 182.40843 * 17 16 15 33 33 H 1.08997 * 109.48550 * 62.37144 * 17 16 15 34 34 H 1.09003 * 109.47953 * 178.86010 * 19 18 17 35 35 H 1.08995 * 109.49265 * 58.82602 * 19 18 17 36 36 H 1.09001 * 109.52724 * 297.70937 * 20 19 18 37 37 H 1.09000 * 109.52338 * 177.51272 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 1.6928 -0.2301 2.4203 14 8 0.9953 0.7557 2.5316 15 6 2.1956 -0.9402 3.6508 16 6 3.7273 -0.9308 3.6578 17 6 4.2279 -1.5840 4.9487 18 8 3.6924 -0.8843 6.0738 19 6 2.2653 -0.9001 6.1454 20 6 1.6858 -0.2194 4.9026 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 0.7087 1.1613 -3.4844 28 1 2.5760 -1.4792 1.1072 29 1 1.8373 -1.9695 3.6513 30 1 4.0990 -1.4897 2.7989 31 1 4.0855 0.0974 3.6072 32 1 5.3167 -1.5418 4.9789 33 1 3.9034 -2.6241 4.9794 34 1 1.9402 -0.3652 7.0377 35 1 1.9149 -1.9312 6.1918 36 1 2.0028 0.8232 4.8771 37 1 0.5974 -0.2696 4.9339 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259755615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:02 Heat of formation + Delta-G solvation = -117.642766 kcal Electronic energy + Delta-G solvation = -18284.209053 eV Core-core repulsion = 15446.167760 eV Total energy + Delta-G solvation = -2838.041293 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.25708 -39.61062 -37.20690 -34.78101 -34.14330 -32.06629 -31.31990 -27.65021 -27.33929 -26.70953 -24.43916 -22.87171 -21.22942 -20.27942 -18.99359 -17.55351 -17.05446 -16.87721 -16.83612 -16.01362 -15.74587 -15.49848 -14.93124 -14.52776 -14.36306 -14.17932 -13.86720 -13.31499 -13.30647 -12.91727 -12.90617 -12.48273 -12.42243 -12.28957 -12.25197 -12.10024 -11.78773 -11.62513 -11.36847 -11.01239 -10.64044 -10.51758 -10.13384 -9.63879 -8.07714 -6.27715 1.47030 1.47541 1.55178 1.88953 2.37521 2.68089 3.03124 3.17669 3.69093 3.83807 3.86538 4.06605 4.32587 4.35318 4.56193 4.64521 4.69931 4.73872 4.82322 4.87129 4.88674 5.01404 5.12996 5.16607 5.21235 5.28763 5.31809 5.53793 5.55961 5.75217 5.93502 5.94412 6.26354 6.29635 6.75582 7.10747 7.39422 7.65517 8.92754 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042343 B = 0.005913 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.104743 B = 4734.451430 C = 5118.093173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.288 3.712 3 C -0.133 4.133 4 C -0.540 4.540 5 H 0.069 0.931 6 C 0.022 3.978 7 N -0.907 5.907 8 Si 0.966 3.034 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.705 5.705 13 C 0.501 3.499 14 O -0.588 6.588 15 C -0.104 4.104 16 C -0.143 4.143 17 C 0.065 3.935 18 O -0.403 6.403 19 C 0.066 3.934 20 C -0.132 4.132 21 H 0.026 0.974 22 H 0.064 0.936 23 H 0.023 0.977 24 H 0.021 0.979 25 H 0.064 0.936 26 H 0.024 0.976 27 H 0.263 0.737 28 H 0.401 0.599 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.236 -7.691 12.531 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.204 3.796 3 C -0.191 4.191 4 C -0.578 4.578 5 H 0.087 0.913 6 C -0.178 4.178 7 N -0.544 5.544 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.353 5.353 13 C 0.288 3.712 14 O -0.470 6.470 15 C -0.125 4.125 16 C -0.181 4.181 17 C -0.012 4.012 18 O -0.322 6.322 19 C -0.010 4.010 20 C -0.170 4.170 21 H 0.045 0.955 22 H 0.083 0.917 23 H 0.042 0.958 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.235 0.765 29 H 0.135 0.865 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.775 -6.786 12.568 15.060 hybrid contribution 0.017 -0.326 -1.466 1.502 sum 4.792 -7.112 11.103 14.029 Atomic orbital electron populations 1.21925 0.98478 0.98525 1.00319 1.17899 0.90518 0.89367 0.81830 1.21915 0.97694 0.99298 1.00229 1.21401 1.32742 1.12984 0.90677 0.91277 1.25628 0.94861 0.95533 1.01795 1.69979 1.36707 1.23599 1.24152 0.85498 0.78677 0.78563 0.78147 1.19514 1.21403 1.19569 1.46418 1.51941 1.31267 1.05714 1.21187 0.79854 0.84463 0.85647 1.90581 1.40424 1.28561 1.87406 1.21417 0.97727 1.01331 0.92034 1.22181 0.92624 1.02400 1.00883 1.22717 0.99825 0.95321 0.83313 1.87902 1.21226 1.76578 1.46522 1.22689 0.80182 1.00922 0.97231 1.21961 1.01312 0.99742 0.93985 0.95505 0.91691 0.95825 0.95997 0.91686 0.95655 0.92779 0.76461 0.86520 0.88918 0.92729 0.87100 0.90773 0.87444 0.90997 0.92944 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.95 8.18 71.98 0.59 -6.36 16 2 C 0.29 14.32 0.78 2.86 0.00 14.32 16 3 C -0.13 -6.94 8.18 71.98 0.59 -6.35 16 4 C -0.54 -27.61 8.18 25.60 0.21 -27.40 16 5 H 0.07 3.31 7.60 -2.91 -0.02 3.29 16 6 C 0.02 1.16 5.15 84.66 0.44 1.59 16 7 N -0.91 -50.01 9.35 21.45 0.20 -49.81 16 8 Si 0.97 41.15 29.54 68.60 2.03 43.18 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 12 N -0.70 -28.50 5.01 -426.32 -2.13 -30.64 16 13 C 0.50 19.42 6.58 87.66 0.58 19.99 16 14 O -0.59 -27.81 12.18 -3.02 -0.04 -27.85 16 15 C -0.10 -2.81 2.61 -11.42 -0.03 -2.84 16 16 C -0.14 -3.30 5.30 30.68 0.16 -3.13 16 17 C 0.06 1.17 6.84 72.01 0.49 1.67 16 18 O -0.40 -9.13 10.77 -148.98 -1.60 -10.74 16 19 C 0.07 1.30 6.84 72.01 0.49 1.80 16 20 C -0.13 -3.46 4.73 30.68 0.15 -3.32 16 21 H 0.03 1.39 6.17 -2.39 -0.01 1.37 16 22 H 0.06 3.65 6.07 -2.39 -0.01 3.63 16 23 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 3.67 6.07 -2.39 -0.01 3.65 16 26 H 0.02 1.32 6.17 -2.39 -0.01 1.31 16 27 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 28 H 0.40 13.74 7.84 -92.71 -0.73 13.01 16 29 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.09 1.89 7.70 -2.38 -0.02 1.87 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.05 1.64 8.02 -2.39 -0.02 1.63 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -64.23 288.75 2.45 -61.78 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.33 Total: 24.10 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 3.66 Total: -10.03 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -1.93 Total: -80.44 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.64 Total: -38.58 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -64.23 2.45 -61.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259755615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.862 kcal (2) G-P(sol) polarization free energy of solvation -64.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds