Wall clock time and date at job start Mon Mar 30 2020 04:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47235 * 2 1 4 4 C 1.52996 * 109.47488 * 120.00389 * 2 1 3 5 5 C 1.50697 * 109.47249 * 64.99573 * 4 2 1 6 6 O 1.21283 * 119.99818 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99934 * 179.97438 * 5 4 2 8 8 C 1.47149 * 120.98488 * 354.12608 * 7 5 4 9 9 C 1.53289 * 108.38766 * 129.48267 * 8 7 5 10 10 O 1.42961 * 109.22463 * 52.30097 * 9 8 7 11 11 C 1.42960 * 114.16728 * 297.42275 * 10 9 8 12 12 C 1.47151 * 120.98201 * 174.14314 * 7 5 4 13 13 H 1.09003 * 109.68063 * 110.79325 * 12 7 5 14 14 C 1.50697 * 109.68384 * 350.23914 * 12 7 5 15 15 H 1.08003 * 120.00097 * 324.17665 * 14 12 7 16 16 C 1.37879 * 120.00449 * 144.16528 * 14 12 7 17 17 N 1.31516 * 119.99408 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 120.00344 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47274 * 59.99788 * 18 16 14 20 20 H 1.48499 * 109.47078 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46978 * 299.99852 * 18 16 14 22 22 H 1.09007 * 109.46466 * 299.99720 * 1 2 3 23 23 H 1.09000 * 109.47336 * 59.99307 * 1 2 3 24 24 H 1.08994 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47077 * 240.00589 * 2 1 3 26 26 H 1.08997 * 109.47053 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46717 * 300.00142 * 3 2 1 28 28 H 1.08993 * 109.47173 * 60.00546 * 3 2 1 29 29 H 1.09003 * 109.47043 * 304.99235 * 4 2 1 30 30 H 1.09005 * 109.46949 * 184.99959 * 4 2 1 31 31 H 1.08999 * 109.68558 * 249.20526 * 8 7 5 32 32 H 1.08996 * 109.68060 * 9.75871 * 8 7 5 33 33 H 1.08999 * 109.51443 * 172.22598 * 9 8 7 34 34 H 1.09001 * 109.51549 * 292.38137 * 9 8 7 35 35 H 1.09001 * 109.51207 * 302.65203 * 11 10 9 36 36 H 1.09006 * 109.55234 * 182.52711 * 11 10 9 37 37 H 0.97001 * 119.99529 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 -2.1733 1.1888 6 8 1.0116 -2.5903 0.2398 7 7 1.9854 -3.0087 2.1888 8 6 2.8575 -2.5589 3.2854 9 6 2.1883 -2.9230 4.6157 10 8 1.8453 -4.3108 4.6058 11 6 0.8974 -4.6722 3.5985 12 6 1.5005 -4.3978 2.2162 13 1 2.3311 -5.0802 2.0359 14 6 0.4468 -4.5885 1.1559 15 1 -0.2426 -3.7885 0.9295 16 6 0.3628 -5.7842 0.4744 17 7 1.2021 -6.7584 0.7502 18 14 -0.9429 -6.0203 -0.8403 19 1 -0.7551 -5.0093 -1.9117 20 1 -0.8226 -7.3829 -1.4183 21 1 -2.2894 -5.8567 -0.2358 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6056 -0.2618 2.1369 30 1 3.1264 -0.6443 1.2950 31 1 3.8247 -3.0562 3.2129 32 1 2.9940 -1.4792 3.2266 33 1 2.8776 -2.7241 5.4363 34 1 1.2856 -2.3258 4.7446 35 1 -0.0100 -4.0814 3.7237 36 1 0.6571 -5.7318 3.6871 37 1 1.1433 -7.5995 0.2706 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259794817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:00 Heat of formation + Delta-G solvation = -76.336994 kcal Electronic energy + Delta-G solvation = -18648.751249 eV Core-core repulsion = 15812.501108 eV Total energy + Delta-G solvation = -2836.250141 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.51137 -37.60744 -35.20771 -33.76115 -32.92475 -30.24989 -28.35782 -26.85890 -26.39700 -24.86735 -22.55099 -21.42833 -19.74096 -18.19557 -17.11066 -15.82156 -15.59368 -15.14467 -14.80354 -14.45660 -14.28559 -13.95860 -13.75062 -13.37275 -13.02854 -12.46442 -12.09745 -12.03164 -11.88340 -11.48916 -11.24458 -10.98861 -10.82333 -10.66433 -10.55941 -10.46304 -10.36956 -10.11545 -10.07650 -9.48490 -9.11333 -8.59523 -7.88253 -7.27885 -5.97218 -3.87803 3.41059 3.44815 3.53587 3.68035 3.94434 4.49313 4.64057 5.07619 5.12034 5.19124 5.36026 5.41321 5.52323 5.58912 5.65029 5.73888 5.83472 5.86149 5.97424 6.01233 6.08523 6.18847 6.23028 6.35739 6.39146 6.64266 6.67010 6.83076 6.85094 7.39439 7.66565 7.85205 8.07099 8.13872 8.69113 9.14175 9.37301 9.68113 11.12668 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.011041 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.412558 B = 2535.282120 C = 3844.016785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 C -0.145 4.145 4 C -0.142 4.142 5 C 0.504 3.496 6 O -0.493 6.493 7 N -0.616 5.616 8 C 0.072 3.928 9 C 0.053 3.947 10 O -0.398 6.398 11 C 0.060 3.940 12 C 0.231 3.769 13 H 0.066 0.934 14 C -0.478 4.478 15 H 0.080 0.920 16 C 0.058 3.942 17 N -0.903 5.903 18 Si 0.903 3.097 19 H -0.275 1.275 20 H -0.291 1.291 21 H -0.279 1.279 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.036 0.964 36 H 0.098 0.902 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.636 12.424 4.236 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 C -0.202 4.202 4 C -0.183 4.183 5 C 0.290 3.710 6 O -0.367 6.367 7 N -0.352 5.352 8 C -0.053 4.053 9 C -0.026 4.026 10 O -0.317 6.317 11 C -0.017 4.017 12 C 0.131 3.869 13 H 0.084 0.916 14 C -0.516 4.516 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.544 5.544 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.217 1.217 21 H -0.205 1.205 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.116 0.884 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.393 11.863 3.772 12.676 hybrid contribution -0.556 0.080 -0.749 0.936 sum 1.837 11.943 3.023 12.455 Atomic orbital electron populations 1.21951 0.94930 1.03930 1.00093 1.20823 0.96578 0.94610 0.97856 1.21860 1.00532 0.96459 1.01394 1.21911 1.01675 0.95107 0.99602 1.20327 0.80760 0.86776 0.83118 1.90766 1.37793 1.76439 1.31660 1.48736 1.49164 1.14663 1.22606 1.22283 0.94779 0.99648 0.88573 1.22757 0.98728 0.84546 0.96526 1.87864 1.63898 1.23446 1.56468 1.23475 0.89837 1.00615 0.87802 1.19816 0.96720 0.77338 0.93022 0.91619 1.21233 1.14053 0.98876 1.17446 0.90172 1.24911 0.96372 0.95976 0.97047 1.69919 1.37185 1.04723 1.42527 0.86461 0.81520 0.76597 0.82249 1.19997 1.21734 1.20494 0.93892 0.93589 0.90002 0.90551 0.93034 0.92843 0.93026 0.90306 0.90272 0.91664 0.90477 0.89278 0.93769 0.94569 0.88443 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.93 37.16 0.33 -2.03 16 2 C -0.08 -1.18 2.57 -90.62 -0.23 -1.41 16 3 C -0.15 -1.64 9.19 37.16 0.34 -1.29 16 4 C -0.14 -2.17 3.55 -27.89 -0.10 -2.27 16 5 C 0.50 10.59 7.24 -10.99 -0.08 10.51 16 6 O -0.49 -12.40 10.21 5.55 0.06 -12.34 16 7 N -0.62 -13.10 3.02 -166.07 -0.50 -13.60 16 8 C 0.07 1.16 6.55 -3.54 -0.02 1.14 16 9 C 0.05 0.83 6.98 37.31 0.26 1.09 16 10 O -0.40 -8.11 10.74 -35.23 -0.38 -8.49 16 11 C 0.06 1.35 6.27 37.31 0.23 1.59 16 12 C 0.23 5.84 3.20 -68.58 -0.22 5.62 16 13 H 0.07 1.89 7.28 -51.93 -0.38 1.51 16 14 C -0.48 -13.40 6.20 -34.44 -0.21 -13.61 16 15 H 0.08 2.34 5.90 -52.48 -0.31 2.03 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -26.70 12.78 55.43 0.71 -25.99 16 18 Si 0.90 22.86 29.54 -169.99 -5.02 17.84 16 19 H -0.27 -7.12 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 1.57 5.95 -51.93 -0.31 1.27 16 25 H 0.08 1.27 7.95 -51.93 -0.41 0.86 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.06 7.90 -51.93 -0.41 0.65 16 30 H 0.08 1.06 7.78 -51.93 -0.40 0.65 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.98 6.04 -51.93 -0.31 0.66 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 36 H 0.10 2.32 8.14 -51.93 -0.42 1.90 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 292.27 15.07 4.40 4.40 Total: -1.00 -31.60 292.27 -6.43 -38.03 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.90 Total: -0.75 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 0.20 Total: 0.90 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.21 Total: -39.59 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.32 Total: -20.83 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.60 -6.43 -38.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259794817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.307 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds