Wall clock time and date at job start Mon Mar 30 2020 04:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47235 * 2 1 4 4 C 1.52996 * 109.47488 * 120.00389 * 2 1 3 5 5 C 1.50697 * 109.47249 * 64.99573 * 4 2 1 6 6 O 1.21283 * 119.99818 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99934 * 179.97438 * 5 4 2 8 8 C 1.47149 * 120.98488 * 354.12608 * 7 5 4 9 9 C 1.53289 * 108.38766 * 129.48267 * 8 7 5 10 10 O 1.42961 * 109.22463 * 52.30097 * 9 8 7 11 11 C 1.42960 * 114.16728 * 297.42275 * 10 9 8 12 12 C 1.47151 * 120.98201 * 174.14314 * 7 5 4 13 13 H 1.09003 * 109.68063 * 110.79325 * 12 7 5 14 14 C 1.50697 * 109.68384 * 350.23914 * 12 7 5 15 15 H 1.08003 * 120.00097 * 324.17665 * 14 12 7 16 16 C 1.37879 * 120.00449 * 144.16528 * 14 12 7 17 17 N 1.31516 * 119.99408 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 120.00344 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47274 * 59.99788 * 18 16 14 20 20 H 1.48499 * 109.47078 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46978 * 299.99852 * 18 16 14 22 22 H 1.09007 * 109.46466 * 299.99720 * 1 2 3 23 23 H 1.09000 * 109.47336 * 59.99307 * 1 2 3 24 24 H 1.08994 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47077 * 240.00589 * 2 1 3 26 26 H 1.08997 * 109.47053 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46717 * 300.00142 * 3 2 1 28 28 H 1.08993 * 109.47173 * 60.00546 * 3 2 1 29 29 H 1.09003 * 109.47043 * 304.99235 * 4 2 1 30 30 H 1.09005 * 109.46949 * 184.99959 * 4 2 1 31 31 H 1.08999 * 109.68558 * 249.20526 * 8 7 5 32 32 H 1.08996 * 109.68060 * 9.75871 * 8 7 5 33 33 H 1.08999 * 109.51443 * 172.22598 * 9 8 7 34 34 H 1.09001 * 109.51549 * 292.38137 * 9 8 7 35 35 H 1.09001 * 109.51207 * 302.65203 * 11 10 9 36 36 H 1.09006 * 109.55234 * 182.52711 * 11 10 9 37 37 H 0.97001 * 119.99529 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 -2.1733 1.1888 6 8 1.0116 -2.5903 0.2398 7 7 1.9854 -3.0087 2.1888 8 6 2.8575 -2.5589 3.2854 9 6 2.1883 -2.9230 4.6157 10 8 1.8453 -4.3108 4.6058 11 6 0.8974 -4.6722 3.5985 12 6 1.5005 -4.3978 2.2162 13 1 2.3311 -5.0802 2.0359 14 6 0.4468 -4.5885 1.1559 15 1 -0.2426 -3.7885 0.9295 16 6 0.3628 -5.7842 0.4744 17 7 1.2021 -6.7584 0.7502 18 14 -0.9429 -6.0203 -0.8403 19 1 -0.7551 -5.0093 -1.9117 20 1 -0.8226 -7.3829 -1.4183 21 1 -2.2894 -5.8567 -0.2358 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6056 -0.2618 2.1369 30 1 3.1264 -0.6443 1.2950 31 1 3.8247 -3.0562 3.2129 32 1 2.9940 -1.4792 3.2266 33 1 2.8776 -2.7241 5.4363 34 1 1.2856 -2.3258 4.7446 35 1 -0.0100 -4.0814 3.7237 36 1 0.6571 -5.7318 3.6871 37 1 1.1433 -7.5995 0.2706 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259794817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:00 Heat of formation + Delta-G solvation = -98.073876 kcal Electronic energy + Delta-G solvation = -18649.693831 eV Core-core repulsion = 15812.501108 eV Total energy + Delta-G solvation = -2837.192723 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.13090 -39.16864 -36.52563 -35.45416 -34.88852 -32.04374 -29.75935 -27.95019 -27.88990 -26.82961 -24.19150 -22.96430 -21.06768 -19.76176 -19.04028 -17.47667 -17.24840 -16.71212 -16.37278 -16.14894 -15.79086 -15.51076 -15.38666 -14.63671 -14.51627 -14.03794 -13.90914 -13.26826 -13.02254 -12.93410 -12.89705 -12.77196 -12.62712 -12.34476 -11.98665 -11.84527 -11.81039 -11.60483 -11.49724 -11.30124 -10.88354 -10.70898 -9.73585 -9.04748 -8.15120 -6.08181 1.34241 1.38930 1.47735 2.09181 2.33406 2.46965 3.08873 3.22203 3.82774 3.95408 4.08048 4.10099 4.30401 4.31398 4.44177 4.49983 4.69806 4.74072 4.77645 4.78898 4.81633 4.89144 4.94612 5.06533 5.08408 5.17118 5.33264 5.41143 5.51360 5.61010 5.71421 5.91799 6.03803 6.41002 6.88088 7.04130 7.45276 7.78606 8.94817 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.011041 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.412558 B = 2535.282120 C = 3844.016785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C -0.135 4.135 4 C -0.127 4.127 5 C 0.489 3.511 6 O -0.547 6.547 7 N -0.625 5.625 8 C 0.068 3.932 9 C 0.044 3.956 10 O -0.410 6.410 11 C 0.079 3.921 12 C 0.232 3.768 13 H 0.022 0.978 14 C -0.476 4.476 15 H 0.066 0.934 16 C 0.005 3.995 17 N -0.935 5.935 18 Si 0.956 3.044 19 H -0.288 1.288 20 H -0.283 1.283 21 H -0.268 1.268 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.036 0.964 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.056 0.944 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 15.420 5.607 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 C -0.192 4.192 4 C -0.167 4.167 5 C 0.278 3.722 6 O -0.424 6.424 7 N -0.360 5.360 8 C -0.055 4.055 9 C -0.033 4.033 10 O -0.329 6.329 11 C 0.001 3.999 12 C 0.130 3.870 13 H 0.040 0.960 14 C -0.514 4.514 15 H 0.084 0.916 16 C -0.192 4.192 17 N -0.578 5.578 18 Si 0.782 3.218 19 H -0.214 1.214 20 H -0.208 1.208 21 H -0.193 1.193 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.069 14.894 5.178 16.064 hybrid contribution -0.688 -0.738 -1.129 1.514 sum 2.381 14.156 4.049 14.915 Atomic orbital electron populations 1.21894 0.95871 1.01362 1.01551 1.20838 0.95844 0.96836 0.96492 1.21772 1.01369 0.93482 1.02627 1.21878 1.03539 0.90179 1.01099 1.21426 0.79643 0.89119 0.81975 1.90738 1.40085 1.77914 1.33625 1.48722 1.49836 1.13103 1.24365 1.22615 0.93612 1.02462 0.86819 1.23179 1.00280 0.81995 0.97803 1.87836 1.63171 1.26773 1.55094 1.22942 0.90265 0.99547 0.87134 1.19454 0.94604 0.79286 0.93704 0.96015 1.21388 1.14240 0.98066 1.17753 0.91650 1.25584 0.98347 0.96081 0.99181 1.70027 1.38847 1.05062 1.43834 0.85643 0.80052 0.76298 0.79758 1.21391 1.20799 1.19264 0.91954 0.92633 0.94462 0.93461 0.91629 0.92293 0.91185 0.87209 0.87392 0.91647 0.85754 0.84809 0.92582 0.94218 0.90634 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 8.93 71.98 0.64 -3.83 16 2 C -0.08 -2.21 2.57 -10.79 -0.03 -2.24 16 3 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 4 C -0.13 -3.44 3.55 29.85 0.11 -3.33 16 5 C 0.49 20.26 7.24 87.66 0.63 20.89 16 6 O -0.55 -28.37 10.21 -3.04 -0.03 -28.40 16 7 N -0.63 -26.12 3.02 -797.70 -2.41 -28.52 16 8 C 0.07 1.96 6.55 86.35 0.57 2.53 16 9 C 0.04 1.24 6.98 72.08 0.50 1.74 16 10 O -0.41 -16.16 10.74 -148.98 -1.60 -17.76 16 11 C 0.08 3.63 6.27 72.08 0.45 4.08 16 12 C 0.23 12.04 3.20 44.22 0.14 12.19 16 13 H 0.02 1.32 7.28 -2.39 -0.02 1.30 16 14 C -0.48 -27.73 6.20 25.60 0.16 -27.57 16 15 H 0.07 3.97 5.90 -2.91 -0.02 3.96 16 16 C 0.00 0.29 5.46 84.65 0.46 0.76 16 17 N -0.94 -57.64 12.78 21.45 0.27 -57.36 16 18 Si 0.96 48.63 29.54 68.60 2.03 50.66 16 19 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 20 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 21 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 22 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.04 1.45 5.95 -2.39 -0.01 1.44 16 25 H 0.05 1.55 7.95 -2.39 -0.02 1.54 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.11 2.36 7.90 -2.39 -0.02 2.34 16 30 H 0.11 2.35 7.78 -2.38 -0.02 2.33 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.12 2.44 6.04 -2.39 -0.01 2.42 16 33 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.04 1.77 8.13 -2.39 -0.02 1.75 16 36 H 0.08 3.75 8.14 -2.38 -0.02 3.73 16 37 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -73.94 292.27 3.60 -70.35 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.04 Total: 7.64 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 4.30 Total: 3.40 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -2.13 Total: -85.89 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -1.63 Total: -46.16 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.66 kcal Total: -73.94 3.60 -70.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259794817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.728 kcal (2) G-P(sol) polarization free energy of solvation -73.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds