Wall clock time and date at job start Mon Mar 30 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 H 1.07999 * 119.99515 * 120.00667 * 4 2 1 6 6 C 1.37870 * 120.00176 * 300.00134 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47288 * 59.99994 * 8 6 4 10 10 H 1.48503 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46819 * 299.99648 * 8 6 4 12 12 N 1.46496 * 109.47313 * 239.99813 * 2 1 3 13 13 C 1.34776 * 120.00006 * 59.99520 * 12 2 1 14 14 O 1.21285 * 119.99667 * 0.02562 * 13 12 2 15 15 C 1.50695 * 120.00245 * 179.97438 * 13 12 2 16 16 H 1.09003 * 109.52598 * 300.00438 * 15 13 12 17 17 C 1.53185 * 109.52409 * 179.87890 * 15 13 12 18 18 C 1.53187 * 109.02976 * 183.17767 * 17 15 13 19 19 C 1.53085 * 109.21381 * 56.89108 * 18 17 15 20 20 O 1.42906 * 109.41428 * 302.42043 * 19 18 17 21 21 C 1.42900 * 114.10031 * 61.15852 * 20 19 18 22 22 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 23 23 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 24 24 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 27 27 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 28 28 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 29 29 H 0.96998 * 120.00192 * 240.00237 * 12 2 1 30 30 H 1.09000 * 109.53982 * 302.98199 * 17 15 13 31 31 H 1.08994 * 109.54065 * 63.24806 * 17 15 13 32 32 H 1.08994 * 109.47398 * 296.98084 * 18 17 15 33 33 H 1.09002 * 109.51830 * 176.82276 * 18 17 15 34 34 H 1.08999 * 109.48251 * 182.44096 * 19 18 17 35 35 H 1.08999 * 109.48672 * 62.40139 * 19 18 17 36 36 H 1.08998 * 109.48506 * 178.85935 * 21 20 19 37 37 H 1.09005 * 109.47477 * 58.82460 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2205 11 1 1.8279 -2.5198 4.0082 12 7 2.0184 -0.6906 -1.1961 13 6 1.6927 -0.2303 -2.4202 14 8 0.9957 0.7561 -2.5315 15 6 2.1955 -0.9403 -3.6506 16 1 3.2856 -0.9403 -3.6514 17 6 1.6829 -0.2210 -4.9022 18 6 2.1338 -0.9966 -6.1439 19 6 1.6244 -2.4372 -6.0506 20 8 2.1136 -3.0371 -4.8494 21 6 1.6839 -2.3832 -3.6536 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 0.7087 1.1612 3.4844 29 1 2.5760 -1.4793 -1.1071 30 1 0.5941 -0.1762 -4.8767 31 1 2.0901 0.7895 -4.9345 32 1 3.2225 -0.9978 -6.1961 33 1 1.7258 -0.5232 -7.0370 34 1 1.9793 -3.0047 -6.9109 35 1 0.5345 -2.4375 -6.0393 36 1 2.0815 -2.9117 -2.7872 37 1 0.5947 -2.3827 -3.6110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259811977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:07 Heat of formation + Delta-G solvation = -97.621165 kcal Electronic energy + Delta-G solvation = -18295.379416 eV Core-core repulsion = 15458.206325 eV Total energy + Delta-G solvation = -2837.173092 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.92910 -38.31160 -35.38665 -33.39825 -32.55146 -31.37598 -29.22581 -25.55871 -25.30559 -24.94193 -24.20205 -21.27850 -19.87098 -18.58697 -17.40699 -16.21095 -15.97964 -15.52463 -15.08670 -14.87756 -14.42658 -13.76757 -13.49610 -13.28992 -12.75162 -12.52417 -12.32687 -11.92156 -11.56193 -11.29838 -11.08915 -11.07083 -11.02336 -10.84413 -10.47819 -10.35333 -10.29493 -10.17980 -9.75267 -9.55190 -9.09490 -8.52157 -8.47297 -7.86218 -6.08261 -4.20915 3.25193 3.30756 3.31905 3.38118 3.79963 4.12954 4.39155 4.75951 4.87361 4.96087 5.02564 5.19472 5.21337 5.39321 5.53218 5.61954 5.74335 5.82294 5.89970 5.99071 6.21220 6.37131 6.75013 6.94306 7.01864 7.12485 7.28609 7.32437 7.62472 7.63287 7.64002 7.81610 8.04189 8.28698 8.68807 8.82767 9.17097 9.47699 10.93024 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042057 B = 0.005962 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.605863 B = 4695.381414 C = 5081.283424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.291 3.709 3 C -0.146 4.146 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.069 3.931 7 N -0.880 5.880 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.707 5.707 13 C 0.508 3.492 14 O -0.546 6.546 15 C -0.147 4.147 16 H 0.098 0.902 17 C -0.100 4.100 18 C -0.156 4.156 19 C 0.058 3.942 20 O -0.381 6.381 21 C 0.073 3.927 22 H 0.087 0.913 23 H 0.034 0.966 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.034 0.966 27 H 0.087 0.913 28 H 0.264 0.736 29 H 0.387 0.613 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.100 0.900 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 -4.988 -12.692 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.208 3.792 3 C -0.205 4.205 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.133 4.133 7 N -0.517 5.517 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.355 5.355 13 C 0.292 3.708 14 O -0.425 6.425 15 C -0.169 4.169 16 H 0.116 0.884 17 C -0.138 4.138 18 C -0.194 4.194 19 C -0.019 4.019 20 O -0.300 6.300 21 C -0.004 4.004 22 H 0.105 0.895 23 H 0.053 0.947 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.220 0.780 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.583 -4.309 -12.570 13.382 hybrid contribution 0.532 -0.584 0.948 1.234 sum 2.114 -4.893 -11.622 12.786 Atomic orbital electron populations 1.22072 0.97439 0.99035 1.01904 1.18122 0.91241 0.89681 0.80147 1.22073 0.97987 0.98527 1.01903 1.21097 1.32607 1.12636 0.90162 0.92290 1.24817 0.94727 0.94920 0.98887 1.69836 1.35815 1.22363 1.23680 0.86522 0.79112 0.79629 0.81891 1.20249 1.21157 1.20226 1.46696 1.51559 1.30890 1.06312 1.20171 0.81108 0.84976 0.84544 1.90606 1.38530 1.26611 1.86717 1.22045 1.02652 0.96835 0.95334 0.88428 1.21360 1.01757 0.98979 0.91674 1.22229 1.01997 0.96337 0.98807 1.22598 0.98142 0.93529 0.87629 1.87930 1.74238 1.53958 1.13840 1.22529 0.99154 0.90988 0.87755 0.89458 0.94686 0.96014 0.96025 0.94664 0.89467 0.92623 0.78030 0.91057 0.90845 0.91132 0.90803 0.89062 0.93165 0.88207 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 8.18 37.16 0.30 -3.39 16 2 C 0.29 7.17 0.78 -132.97 -0.10 7.06 16 3 C -0.15 -3.73 8.18 37.16 0.30 -3.42 16 4 C -0.53 -13.64 8.18 -34.44 -0.28 -13.92 16 5 H 0.06 1.47 7.60 -52.49 -0.40 1.07 16 6 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 7 N -0.88 -23.89 9.35 55.43 0.52 -23.38 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.71 -14.53 5.00 -48.68 -0.24 -14.77 16 13 C 0.51 9.89 6.58 -10.99 -0.07 9.81 16 14 O -0.55 -12.50 12.18 5.55 0.07 -12.43 16 15 C -0.15 -2.17 2.73 -91.63 -0.25 -2.42 16 16 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 17 C -0.10 -1.36 4.63 -26.54 -0.12 -1.48 16 18 C -0.16 -1.64 6.13 -26.59 -0.16 -1.80 16 19 C 0.06 0.61 6.84 37.20 0.25 0.87 16 20 O -0.38 -5.06 10.77 -35.23 -0.38 -5.43 16 21 C 0.07 0.99 6.01 37.21 0.22 1.22 16 22 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 23 H 0.03 0.88 6.17 -51.93 -0.32 0.56 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.03 0.89 6.17 -51.93 -0.32 0.57 16 27 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.39 7.01 7.80 -40.82 -0.32 6.70 16 30 H 0.07 1.04 8.03 -51.93 -0.42 0.62 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 1.29 7.65 -51.93 -0.40 0.89 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 288.66 15.07 4.35 4.35 Total: -1.00 -29.17 288.66 -6.45 -35.62 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.74 Total: 6.44 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 0.00 Total: -5.75 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.27 Total: -38.15 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.31 Total: -17.87 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.17 -6.45 -35.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259811977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.000 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds