Wall clock time and date at job start Mon Mar 30 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 H 1.07999 * 119.99515 * 120.00667 * 4 2 1 6 6 C 1.37870 * 120.00176 * 300.00134 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47288 * 59.99994 * 8 6 4 10 10 H 1.48503 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46819 * 299.99648 * 8 6 4 12 12 N 1.46496 * 109.47313 * 239.99813 * 2 1 3 13 13 C 1.34776 * 120.00006 * 59.99520 * 12 2 1 14 14 O 1.21285 * 119.99667 * 0.02562 * 13 12 2 15 15 C 1.50695 * 120.00245 * 179.97438 * 13 12 2 16 16 H 1.09003 * 109.52598 * 300.00438 * 15 13 12 17 17 C 1.53185 * 109.52409 * 179.87890 * 15 13 12 18 18 C 1.53187 * 109.02976 * 183.17767 * 17 15 13 19 19 C 1.53085 * 109.21381 * 56.89108 * 18 17 15 20 20 O 1.42906 * 109.41428 * 302.42043 * 19 18 17 21 21 C 1.42900 * 114.10031 * 61.15852 * 20 19 18 22 22 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 23 23 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 24 24 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 27 27 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 28 28 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 29 29 H 0.96998 * 120.00192 * 240.00237 * 12 2 1 30 30 H 1.09000 * 109.53982 * 302.98199 * 17 15 13 31 31 H 1.08994 * 109.54065 * 63.24806 * 17 15 13 32 32 H 1.08994 * 109.47398 * 296.98084 * 18 17 15 33 33 H 1.09002 * 109.51830 * 176.82276 * 18 17 15 34 34 H 1.08999 * 109.48251 * 182.44096 * 19 18 17 35 35 H 1.08999 * 109.48672 * 62.40139 * 19 18 17 36 36 H 1.08998 * 109.48506 * 178.85935 * 21 20 19 37 37 H 1.09005 * 109.47477 * 58.82460 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2205 11 1 1.8279 -2.5198 4.0082 12 7 2.0184 -0.6906 -1.1961 13 6 1.6927 -0.2303 -2.4202 14 8 0.9957 0.7561 -2.5315 15 6 2.1955 -0.9403 -3.6506 16 1 3.2856 -0.9403 -3.6514 17 6 1.6829 -0.2210 -4.9022 18 6 2.1338 -0.9966 -6.1439 19 6 1.6244 -2.4372 -6.0506 20 8 2.1136 -3.0371 -4.8494 21 6 1.6839 -2.3832 -3.6536 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 0.7087 1.1612 3.4844 29 1 2.5760 -1.4793 -1.1071 30 1 0.5941 -0.1762 -4.8767 31 1 2.0901 0.7895 -4.9345 32 1 3.2225 -0.9978 -6.1961 33 1 1.7258 -0.5232 -7.0370 34 1 1.9793 -3.0047 -6.9109 35 1 0.5345 -2.4375 -6.0393 36 1 2.0815 -2.9117 -2.7872 37 1 0.5947 -2.3827 -3.6110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259811977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:07 Heat of formation + Delta-G solvation = -116.850347 kcal Electronic energy + Delta-G solvation = -18296.213256 eV Core-core repulsion = 15458.206325 eV Total energy + Delta-G solvation = -2838.006932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.30238 -39.62773 -37.21067 -34.54763 -34.32411 -32.68922 -30.90222 -27.63839 -27.32520 -25.97927 -25.37407 -22.72548 -21.15024 -20.31711 -19.01366 -17.54908 -17.21225 -16.99671 -16.83339 -15.99976 -15.85617 -15.29274 -14.91519 -14.59672 -14.31515 -14.05970 -13.87665 -13.50359 -13.26760 -12.96748 -12.91086 -12.57214 -12.42618 -12.27623 -12.10986 -12.10240 -11.81561 -11.76181 -11.34826 -11.00723 -10.57445 -10.50612 -10.21887 -9.65676 -8.07152 -6.26814 1.47862 1.48174 1.55740 1.83535 2.37073 2.62741 2.95271 3.18370 3.66425 3.84138 3.89734 4.02623 4.18092 4.33754 4.47659 4.64614 4.70226 4.73899 4.85136 4.89623 4.94850 5.02644 5.07693 5.15755 5.22443 5.28765 5.35134 5.54936 5.57118 5.74664 5.93252 5.94969 6.17437 6.26948 6.75921 7.08156 7.39644 7.62101 8.93260 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042057 B = 0.005962 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.605863 B = 4695.381414 C = 5081.283424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.288 3.712 3 C -0.134 4.134 4 C -0.540 4.540 5 H 0.069 0.931 6 C 0.023 3.977 7 N -0.906 5.906 8 Si 0.965 3.035 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.705 5.705 13 C 0.505 3.495 14 O -0.583 6.583 15 C -0.135 4.135 16 H 0.114 0.886 17 C -0.101 4.101 18 C -0.146 4.146 19 C 0.050 3.950 20 O -0.389 6.389 21 C 0.079 3.921 22 H 0.065 0.935 23 H 0.027 0.973 24 H 0.023 0.977 25 H 0.021 0.979 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.263 0.737 29 H 0.401 0.599 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.053 0.947 36 H 0.107 0.893 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 -6.608 -13.699 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.204 3.796 3 C -0.193 4.193 4 C -0.578 4.578 5 H 0.087 0.913 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.790 3.210 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.354 5.354 13 C 0.292 3.708 14 O -0.464 6.464 15 C -0.157 4.157 16 H 0.132 0.868 17 C -0.139 4.139 18 C -0.184 4.184 19 C -0.026 4.026 20 O -0.307 6.307 21 C 0.001 3.999 22 H 0.083 0.917 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.236 0.764 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.136 0.864 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.701 -5.958 -13.605 15.096 hybrid contribution 0.161 -0.040 1.201 1.213 sum 2.862 -5.998 -12.404 14.072 Atomic orbital electron populations 1.21917 0.98326 0.98579 1.00362 1.17923 0.90610 0.89423 0.81690 1.21927 0.97773 0.99196 1.00389 1.21402 1.32730 1.12993 0.90697 0.91337 1.25603 0.94865 0.95531 1.01722 1.69977 1.36690 1.23547 1.24136 0.85513 0.78651 0.78578 0.78226 1.19654 1.21364 1.19565 1.46479 1.51895 1.31244 1.05770 1.20943 0.80039 0.84472 0.85338 1.90588 1.40107 1.28399 1.87296 1.22002 1.03369 0.97207 0.93110 0.86838 1.21373 1.00809 0.98965 0.92722 1.22191 1.02490 0.95903 0.97810 1.22862 0.98563 0.93787 0.87401 1.87931 1.74424 1.54123 1.14256 1.22436 0.98697 0.90072 0.88685 0.91664 0.95424 0.95798 0.95936 0.95395 0.91636 0.92781 0.76444 0.92516 0.91861 0.90383 0.88649 0.86385 0.92860 0.87476 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.85 8.18 71.98 0.59 -6.26 16 2 C 0.29 14.22 0.78 2.86 0.00 14.22 16 3 C -0.13 -6.94 8.18 71.98 0.59 -6.35 16 4 C -0.54 -27.62 8.18 25.60 0.21 -27.41 16 5 H 0.07 3.30 7.60 -2.91 -0.02 3.28 16 6 C 0.02 1.21 5.15 84.65 0.44 1.65 16 7 N -0.91 -49.74 9.35 21.45 0.20 -49.54 16 8 Si 0.96 41.28 29.54 68.60 2.03 43.31 16 9 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 12 N -0.71 -28.52 5.00 -426.33 -2.13 -30.65 16 13 C 0.51 19.45 6.58 87.66 0.58 20.02 16 14 O -0.58 -26.99 12.18 -3.05 -0.04 -27.03 16 15 C -0.14 -3.80 2.73 -11.45 -0.03 -3.83 16 16 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 17 C -0.10 -2.60 4.63 30.72 0.14 -2.46 16 18 C -0.15 -2.65 6.13 30.69 0.19 -2.46 16 19 C 0.05 0.90 6.84 72.01 0.49 1.40 16 20 O -0.39 -9.23 10.77 -148.98 -1.60 -10.84 16 21 C 0.08 1.99 6.01 72.01 0.43 2.43 16 22 H 0.06 3.63 6.07 -2.39 -0.01 3.62 16 23 H 0.03 1.41 6.17 -2.39 -0.01 1.40 16 24 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.03 1.43 6.17 -2.39 -0.01 1.42 16 27 H 0.06 3.66 6.07 -2.39 -0.01 3.65 16 28 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 29 H 0.40 13.94 7.80 -92.71 -0.72 13.21 16 30 H 0.06 1.62 8.03 -2.39 -0.02 1.60 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.12 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.11 2.53 7.65 -2.39 -0.02 2.51 16 37 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -62.03 288.66 2.41 -59.62 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.33 Total: 24.20 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 3.63 Total: -9.07 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -1.93 Total: -80.19 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.64 Total: -37.87 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -62.03 2.41 -59.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259811977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.233 kcal (2) G-P(sol) polarization free energy of solvation -62.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds