Wall clock time and date at job start Mon Mar 30 2020 03:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99701 * 2 1 4 4 H 1.48503 * 109.47284 * 240.00159 * 3 2 1 5 5 H 1.48494 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47077 * 120.00276 * 3 2 1 7 7 C 1.37878 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99736 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.54245 * 59.89152 * 9 7 2 11 11 C 1.53093 * 109.50556 * 299.78411 * 9 7 2 12 12 O 1.43012 * 109.26042 * 183.21587 * 11 9 7 13 13 C 1.43018 * 113.73480 * 58.66880 * 12 11 9 14 14 C 1.53094 * 109.26047 * 301.32837 * 13 12 11 15 15 N 1.47011 * 109.50657 * 180.02562 * 9 7 2 16 16 C 1.46903 * 110.99808 * 302.32827 * 15 9 7 17 17 C 1.53001 * 109.46965 * 170.54149 * 16 15 9 18 18 H 1.08992 * 109.87098 * 58.37948 * 17 16 15 19 19 C 1.54103 * 109.87515 * 179.38254 * 17 16 15 20 20 C 1.54818 * 104.18289 * 121.45552 * 19 17 16 21 21 C 1.54987 * 102.09617 * 20.87810 * 20 19 17 22 22 O 1.43739 * 109.87942 * 297.36898 * 17 16 15 23 23 H 0.96997 * 120.00271 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.51056 * 63.28150 * 11 9 7 25 25 H 1.09003 * 109.51267 * 303.15368 * 11 9 7 26 26 H 1.09008 * 109.50613 * 181.39363 * 13 12 11 27 27 H 1.09005 * 109.54464 * 61.29446 * 13 12 11 28 28 H 1.08990 * 109.51162 * 296.91669 * 14 13 12 29 29 H 1.09006 * 109.54126 * 176.80050 * 14 13 12 30 30 H 1.08996 * 109.47092 * 290.53910 * 16 15 9 31 31 H 1.09000 * 109.47391 * 50.53790 * 16 15 9 32 32 H 1.08994 * 110.48823 * 240.12364 * 19 17 16 33 33 H 1.09003 * 110.49062 * 2.64795 * 19 17 16 34 34 H 1.09001 * 110.90662 * 139.07882 * 20 19 17 35 35 H 1.09000 * 110.90307 * 262.67825 * 20 19 17 36 36 H 1.08996 * 110.61849 * 81.47633 * 21 20 19 37 37 H 1.09001 * 110.62426 * 204.31954 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6222 -2.5571 -0.8889 11 6 0.3752 -2.5838 1.2522 12 8 -0.2796 -3.8548 1.2851 13 6 0.6205 -4.9662 1.2861 14 6 1.4988 -4.9058 0.0336 15 7 2.2057 -3.6172 -0.0005 16 6 3.1053 -3.5412 -1.1594 17 6 4.2252 -4.5721 -1.0041 18 1 3.7991 -5.5713 -0.9145 19 6 5.1662 -4.5110 -2.2230 20 6 6.5546 -4.1958 -1.6148 21 6 6.3733 -4.6434 -0.1421 22 8 5.0102 -4.2691 0.1613 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3717 -1.7902 1.2285 25 1 0.9977 -2.4720 2.1400 26 1 0.0511 -5.8957 1.2869 27 1 1.2503 -4.9246 2.1748 28 1 0.8740 -5.0022 -0.8541 29 1 2.2248 -5.7185 0.0579 30 1 2.5434 -3.7496 -2.0698 31 1 3.5369 -2.5421 -1.2196 32 1 5.1849 -5.4709 -2.7390 33 1 4.8570 -3.7184 -2.9044 34 1 7.3351 -4.7777 -2.1050 35 1 6.7717 -3.1292 -1.6734 36 1 6.5027 -5.7217 -0.0500 37 1 7.0725 -4.1172 0.5079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259917912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:41 Heat of formation + Delta-G solvation = -83.692276 kcal Electronic energy + Delta-G solvation = -18535.868258 eV Core-core repulsion = 15699.299169 eV Total energy + Delta-G solvation = -2836.569090 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.31145 -38.18108 -34.84127 -33.01986 -31.84740 -29.98626 -29.78842 -26.53705 -25.18157 -23.42143 -22.25412 -21.59713 -20.34025 -19.14689 -16.65042 -16.23589 -15.59115 -15.31920 -14.97475 -14.88300 -14.42452 -13.67054 -13.55739 -13.42329 -13.28898 -12.95711 -12.08712 -11.98743 -11.61542 -11.42135 -11.00113 -10.91728 -10.81371 -10.77776 -10.68038 -10.53928 -10.27578 -10.06311 -9.69041 -9.17758 -8.99856 -8.63480 -8.31048 -7.17045 -6.07823 -4.11185 3.30835 3.35503 3.38794 4.17262 4.37639 4.74156 4.79689 4.95545 5.03453 5.11976 5.26381 5.33747 5.44732 5.73329 5.74896 5.80968 5.85917 5.91788 5.95122 6.00740 6.08163 6.20632 6.27940 6.35912 6.50937 6.69054 6.78234 6.97596 7.30726 7.34039 7.57948 7.75292 7.95372 8.22974 8.26657 8.59743 8.96453 9.53649 11.00340 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.009619 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.117794 B = 2910.285070 C = 4079.981047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.505 4.505 8 H 0.068 0.932 9 C 0.188 3.812 10 H 0.006 0.994 11 C 0.070 3.930 12 O -0.405 6.405 13 C 0.069 3.931 14 C 0.017 3.983 15 N -0.523 5.523 16 C 0.065 3.935 17 C 0.081 3.919 18 H 0.058 0.942 19 C -0.152 4.152 20 C -0.154 4.154 21 C 0.040 3.960 22 O -0.347 6.347 23 H 0.264 0.736 24 H 0.122 0.878 25 H 0.034 0.966 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.026 0.974 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.823 -9.217 -2.781 13.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.544 4.544 8 H 0.086 0.914 9 C 0.082 3.918 10 H 0.024 0.976 11 C -0.006 4.006 12 O -0.324 6.324 13 C -0.009 4.009 14 C -0.112 4.112 15 N -0.248 5.248 16 C -0.063 4.063 17 C 0.022 3.978 18 H 0.076 0.924 19 C -0.190 4.190 20 C -0.191 4.191 21 C -0.037 4.037 22 O -0.265 6.265 23 H 0.074 0.926 24 H 0.140 0.860 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.646 -8.958 -2.146 12.634 hybrid contribution 0.380 0.703 -1.027 1.301 sum 9.027 -8.255 -3.173 12.637 Atomic orbital electron populations 1.69839 1.05901 1.27039 1.50587 1.24988 0.94944 0.99354 0.94963 0.86510 0.79419 0.82515 0.78712 1.20305 1.21295 1.20073 1.21058 0.93481 0.89203 1.50622 0.91392 1.19838 0.89478 0.88257 0.94237 0.97601 1.23122 0.97445 0.82688 0.97389 1.87896 1.33900 1.15608 1.95041 1.22406 0.91918 0.90074 0.96519 1.22742 0.96383 0.94125 0.97907 1.62221 1.20477 1.01732 1.40381 1.22197 0.92652 1.00051 0.91440 1.22847 0.92276 0.98293 0.84357 0.92405 1.22986 0.95011 1.02346 0.98700 1.23104 0.97132 1.02394 0.96507 1.23531 0.86027 0.98887 0.95234 1.89152 1.17051 1.84872 1.35427 0.92591 0.86030 0.94766 0.90489 0.93448 0.95596 0.91526 0.95151 0.88612 0.91218 0.90242 0.90870 0.90479 0.93029 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 11.37 55.43 0.63 -24.81 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.89 7.81 -34.44 -0.27 -14.16 16 8 H 0.07 1.88 6.57 -52.49 -0.34 1.54 16 9 C 0.19 4.92 1.97 -68.75 -0.14 4.78 16 10 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 11 C 0.07 1.80 6.02 37.21 0.22 2.02 16 12 O -0.41 -9.64 10.83 -35.23 -0.38 -10.02 16 13 C 0.07 1.34 7.01 37.21 0.26 1.60 16 14 C 0.02 0.34 5.44 -3.71 -0.02 0.32 16 15 N -0.52 -11.80 4.46 -227.73 -1.02 -12.82 16 16 C 0.06 1.30 4.22 -3.82 -0.02 1.28 16 17 C 0.08 1.32 3.30 -26.15 -0.09 1.24 16 18 H 0.06 0.91 6.45 -51.93 -0.34 0.58 16 19 C -0.15 -1.96 6.64 -25.20 -0.17 -2.13 16 20 C -0.15 -1.79 7.16 -24.72 -0.18 -1.97 16 21 C 0.04 0.53 7.72 38.21 0.29 0.82 16 22 O -0.35 -6.28 11.13 -35.23 -0.39 -6.67 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.12 3.40 6.19 -51.93 -0.32 3.07 16 25 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.14 6.34 -51.93 -0.33 0.81 16 30 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 31 H 0.10 2.11 6.06 -51.93 -0.31 1.80 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.03 7.70 -51.93 -0.40 0.63 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 288.38 15.07 4.35 4.35 Total: -1.00 -30.03 288.38 -7.85 -37.88 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.83 Total: 0.47 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.19 Total: -4.66 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.38 Total: -37.63 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.77 Total: -16.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.03 -7.85 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259917912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.813 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds