Wall clock time and date at job start Mon Mar 30 2020 03:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99701 * 2 1 4 4 H 1.48503 * 109.47284 * 240.00159 * 3 2 1 5 5 H 1.48494 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47077 * 120.00276 * 3 2 1 7 7 C 1.37878 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99736 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.54245 * 59.89152 * 9 7 2 11 11 C 1.53093 * 109.50556 * 299.78411 * 9 7 2 12 12 O 1.43012 * 109.26042 * 183.21587 * 11 9 7 13 13 C 1.43018 * 113.73480 * 58.66880 * 12 11 9 14 14 C 1.53094 * 109.26047 * 301.32837 * 13 12 11 15 15 N 1.47011 * 109.50657 * 180.02562 * 9 7 2 16 16 C 1.46903 * 110.99808 * 302.32827 * 15 9 7 17 17 C 1.53001 * 109.46965 * 170.54149 * 16 15 9 18 18 H 1.08992 * 109.87098 * 58.37948 * 17 16 15 19 19 C 1.54103 * 109.87515 * 179.38254 * 17 16 15 20 20 C 1.54818 * 104.18289 * 121.45552 * 19 17 16 21 21 C 1.54987 * 102.09617 * 20.87810 * 20 19 17 22 22 O 1.43739 * 109.87942 * 297.36898 * 17 16 15 23 23 H 0.96997 * 120.00271 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.51056 * 63.28150 * 11 9 7 25 25 H 1.09003 * 109.51267 * 303.15368 * 11 9 7 26 26 H 1.09008 * 109.50613 * 181.39363 * 13 12 11 27 27 H 1.09005 * 109.54464 * 61.29446 * 13 12 11 28 28 H 1.08990 * 109.51162 * 296.91669 * 14 13 12 29 29 H 1.09006 * 109.54126 * 176.80050 * 14 13 12 30 30 H 1.08996 * 109.47092 * 290.53910 * 16 15 9 31 31 H 1.09000 * 109.47391 * 50.53790 * 16 15 9 32 32 H 1.08994 * 110.48823 * 240.12364 * 19 17 16 33 33 H 1.09003 * 110.49062 * 2.64795 * 19 17 16 34 34 H 1.09001 * 110.90662 * 139.07882 * 20 19 17 35 35 H 1.09000 * 110.90307 * 262.67825 * 20 19 17 36 36 H 1.08996 * 110.61849 * 81.47633 * 21 20 19 37 37 H 1.09001 * 110.62426 * 204.31954 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6222 -2.5571 -0.8889 11 6 0.3752 -2.5838 1.2522 12 8 -0.2796 -3.8548 1.2851 13 6 0.6205 -4.9662 1.2861 14 6 1.4988 -4.9058 0.0336 15 7 2.2057 -3.6172 -0.0005 16 6 3.1053 -3.5412 -1.1594 17 6 4.2252 -4.5721 -1.0041 18 1 3.7991 -5.5713 -0.9145 19 6 5.1662 -4.5110 -2.2230 20 6 6.5546 -4.1958 -1.6148 21 6 6.3733 -4.6434 -0.1421 22 8 5.0102 -4.2691 0.1613 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3717 -1.7902 1.2285 25 1 0.9977 -2.4720 2.1400 26 1 0.0511 -5.8957 1.2869 27 1 1.2503 -4.9246 2.1748 28 1 0.8740 -5.0022 -0.8541 29 1 2.2248 -5.7185 0.0579 30 1 2.5434 -3.7496 -2.0698 31 1 3.5369 -2.5421 -1.2196 32 1 5.1849 -5.4709 -2.7390 33 1 4.8570 -3.7184 -2.9044 34 1 7.3351 -4.7777 -2.1050 35 1 6.7717 -3.1292 -1.6734 36 1 6.5027 -5.7217 -0.0500 37 1 7.0725 -4.1172 0.5079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259917912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:41 Heat of formation + Delta-G solvation = -105.588494 kcal Electronic energy + Delta-G solvation = -18536.817750 eV Core-core repulsion = 15699.299169 eV Total energy + Delta-G solvation = -2837.518581 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73098 -39.77336 -36.61504 -35.04763 -32.97527 -31.69654 -31.34136 -28.14761 -27.16395 -24.90210 -24.06076 -22.73139 -21.64518 -20.98471 -18.64700 -17.67854 -17.08768 -16.86990 -16.55211 -16.33878 -16.17341 -15.44626 -15.37071 -14.98608 -14.61838 -14.41455 -13.96684 -13.34175 -13.21908 -12.83624 -12.67304 -12.54199 -12.49678 -12.20502 -12.09316 -12.02148 -11.90013 -11.69876 -11.28368 -11.04178 -10.70090 -10.46802 -10.22229 -8.98819 -8.19221 -6.30631 1.40530 1.43183 1.51238 2.38590 2.96376 3.05079 3.19693 3.35173 3.72496 3.89028 4.01958 4.15203 4.19501 4.33676 4.40795 4.47500 4.52432 4.60663 4.69844 4.74237 4.83121 4.89267 4.89802 4.94930 4.96726 5.06795 5.18022 5.26520 5.33555 5.49966 5.64260 5.96928 6.15148 6.27811 6.46787 6.66701 6.83275 7.38328 8.88369 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.009619 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.117794 B = 2910.285070 C = 4079.981047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.196 3.804 10 H -0.034 1.034 11 C 0.084 3.916 12 O -0.419 6.419 13 C 0.061 3.939 14 C 0.018 3.982 15 N -0.534 5.534 16 C 0.066 3.934 17 C 0.085 3.915 18 H 0.070 0.930 19 C -0.149 4.149 20 C -0.147 4.147 21 C 0.033 3.967 22 O -0.387 6.387 23 H 0.266 0.734 24 H 0.095 0.905 25 H 0.025 0.975 26 H 0.119 0.881 27 H 0.050 0.950 28 H 0.022 0.978 29 H 0.099 0.901 30 H 0.030 0.970 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.613 -10.554 -3.166 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.078 0.922 9 C 0.088 3.912 10 H -0.017 1.017 11 C 0.007 3.993 12 O -0.338 6.338 13 C -0.016 4.016 14 C -0.111 4.111 15 N -0.259 5.259 16 C -0.062 4.062 17 C 0.027 3.973 18 H 0.088 0.912 19 C -0.187 4.187 20 C -0.185 4.185 21 C -0.043 4.043 22 O -0.307 6.307 23 H 0.075 0.925 24 H 0.113 0.887 25 H 0.043 0.957 26 H 0.137 0.863 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.117 0.883 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.453 -10.321 -2.537 14.908 hybrid contribution -0.171 1.027 -0.898 1.375 sum 10.282 -9.295 -3.435 14.280 Atomic orbital electron populations 1.69970 1.07245 1.27896 1.50956 1.25790 0.95754 1.02682 0.94379 0.85498 0.78248 0.78331 0.78916 1.19463 1.20616 1.19697 1.21234 0.93206 0.90371 1.51000 0.92161 1.19581 0.89579 0.89564 0.92449 1.01679 1.22717 0.96356 0.83449 0.96801 1.87851 1.35123 1.15757 1.95109 1.22769 0.92205 0.89994 0.96597 1.22842 0.96995 0.93482 0.97732 1.62206 1.19961 1.01941 1.41772 1.22206 0.93381 1.00045 0.90605 1.22799 0.91741 0.96974 0.85775 0.91221 1.22993 0.94707 1.03758 0.97211 1.23099 0.97281 1.02421 0.95670 1.23796 0.83840 1.00346 0.96306 1.89099 1.19553 1.85538 1.36483 0.92463 0.88691 0.95712 0.86274 0.93153 0.95979 0.88275 0.95191 0.91539 0.88344 0.90915 0.87570 0.91447 0.90887 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.90 11.37 21.45 0.24 -53.66 16 2 C 0.01 0.73 5.30 84.66 0.45 1.18 16 3 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.52 -29.52 7.81 25.60 0.20 -29.32 16 8 H 0.06 3.45 6.57 -2.91 -0.02 3.43 16 9 C 0.20 10.59 1.97 44.18 0.09 10.68 16 10 H -0.03 -2.08 8.14 -2.39 -0.02 -2.10 16 11 C 0.08 4.47 6.02 72.01 0.43 4.90 16 12 O -0.42 -20.03 10.83 -148.98 -1.61 -21.65 16 13 C 0.06 2.29 7.01 72.01 0.50 2.80 16 14 C 0.02 0.67 5.44 86.31 0.47 1.14 16 15 N -0.53 -24.32 4.46 -874.41 -3.90 -28.22 16 16 C 0.07 2.65 4.22 86.30 0.36 3.02 16 17 C 0.09 2.66 3.30 30.97 0.10 2.76 16 18 H 0.07 2.00 6.45 -2.39 -0.02 1.98 16 19 C -0.15 -3.45 6.64 31.59 0.21 -3.24 16 20 C -0.15 -3.01 7.16 31.89 0.23 -2.78 16 21 C 0.03 0.79 7.72 72.66 0.56 1.35 16 22 O -0.39 -13.51 11.13 -148.98 -1.66 -15.17 16 23 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 24 H 0.10 5.55 6.19 -2.39 -0.01 5.54 16 25 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.12 3.48 8.14 -2.38 -0.02 3.46 16 27 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 3.12 6.34 -2.38 -0.02 3.11 16 30 H 0.03 1.19 8.12 -2.39 -0.02 1.17 16 31 H 0.07 3.04 6.06 -2.39 -0.01 3.02 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.79 7.70 -2.39 -0.02 1.77 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -66.81 288.38 -0.25 -67.06 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.04 Total: 12.89 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 3.61 Total: -7.50 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -3.65 Total: -81.87 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -3.27 Total: -36.82 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -66.81 -0.25 -67.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259917912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.528 kcal (2) G-P(sol) polarization free energy of solvation -66.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds