Wall clock time and date at job start Mon Mar 30 2020 03:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99851 * 2 1 4 4 H 1.48496 * 109.46885 * 264.77398 * 3 2 1 5 5 H 1.48502 * 109.46957 * 24.77045 * 3 2 1 6 6 H 1.48499 * 109.47156 * 144.76908 * 3 2 1 7 7 C 1.37871 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00569 * 5.60955 * 7 2 1 9 9 C 1.50700 * 120.00398 * 185.60488 * 7 2 1 10 10 H 1.09010 * 109.54176 * 335.34082 * 9 7 2 11 11 C 1.53097 * 109.50950 * 95.44477 * 9 7 2 12 12 O 1.43014 * 109.26385 * 176.78749 * 11 9 7 13 13 C 1.43018 * 113.73525 * 301.33615 * 12 11 9 14 14 C 1.53096 * 109.26158 * 58.66512 * 13 12 11 15 15 N 1.47014 * 109.51003 * 215.23237 * 9 7 2 16 16 C 1.46903 * 111.00161 * 57.67229 * 15 9 7 17 17 C 1.52997 * 109.47101 * 189.68176 * 16 15 9 18 18 H 1.09001 * 109.99147 * 306.08479 * 17 16 15 19 19 C 1.54101 * 109.87874 * 184.99820 * 17 16 15 20 20 C 1.54811 * 104.30405 * 238.48132 * 19 17 16 21 21 C 1.55224 * 101.98743 * 339.25923 * 20 19 17 22 22 O 1.43745 * 109.87814 * 67.16470 * 17 16 15 23 23 H 0.96999 * 120.00426 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.50150 * 56.85043 * 11 9 7 25 25 H 1.09003 * 109.53963 * 296.74788 * 11 9 7 26 26 H 1.09003 * 109.50267 * 298.73184 * 13 12 11 27 27 H 1.08997 * 109.53736 * 178.62560 * 13 12 11 28 28 H 1.09008 * 109.50578 * 183.21508 * 14 13 12 29 29 H 1.08999 * 109.50683 * 63.08787 * 14 13 12 30 30 H 1.08999 * 109.47094 * 69.67868 * 16 15 9 31 31 H 1.08998 * 109.46760 * 309.68067 * 16 15 9 32 32 H 1.08999 * 110.48608 * 357.22134 * 19 17 16 33 33 H 1.08993 * 110.48977 * 119.73748 * 19 17 16 34 34 H 1.09003 * 110.90859 * 97.38118 * 20 19 17 35 35 H 1.08997 * 110.90394 * 220.98631 * 20 19 17 36 36 H 1.09003 * 110.52442 * 278.38833 * 21 20 19 37 37 H 1.09002 * 110.64580 * 155.43977 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6070 1.9827 -1.3942 5 1 1.3956 2.6821 0.5866 6 1 3.4870 1.4748 0.8077 7 6 2.0045 -1.1940 0.0005 8 1 1.4685 -2.1272 -0.0905 9 6 3.5061 -1.1971 0.1280 10 1 3.9038 -0.2446 -0.2226 11 6 3.8944 -1.4044 1.5943 12 8 5.3186 -1.4815 1.6990 13 6 5.8965 -2.5355 0.9242 14 6 5.5286 -2.3396 -0.5490 15 7 4.0653 -2.2900 -0.6809 16 6 3.6678 -2.1593 -2.0890 17 6 4.0589 -3.4282 -2.8492 18 1 5.1186 -3.6379 -2.7040 19 6 3.7604 -3.2525 -4.3507 20 6 2.7785 -4.4024 -4.6826 21 6 3.0434 -5.3979 -3.5214 22 8 3.2729 -4.5383 -2.3842 23 1 -0.4851 0.8400 -0.0004 24 1 3.4518 -2.3308 1.9604 25 1 3.5304 -0.5671 2.1897 26 1 5.5122 -3.4948 1.2708 27 1 6.9808 -2.5165 1.0342 28 1 5.9190 -3.1715 -1.1354 29 1 5.9586 -1.4054 -0.9104 30 1 4.1731 -1.3007 -2.5311 31 1 2.5888 -2.0171 -2.1503 32 1 3.2923 -2.2858 -4.5361 33 1 4.6749 -3.3510 -4.9356 34 1 1.7470 -4.0504 -4.6651 35 1 3.0182 -4.8526 -5.6459 36 1 3.9262 -6.0022 -3.7301 37 1 2.1734 -6.0327 -3.3534 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259917922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:45 Heat of formation + Delta-G solvation = -83.560213 kcal Electronic energy + Delta-G solvation = -18586.224749 eV Core-core repulsion = 15749.661386 eV Total energy + Delta-G solvation = -2836.563363 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.35626 -38.38641 -35.04015 -32.84665 -31.81800 -30.50313 -30.02729 -26.84221 -25.18725 -23.54989 -22.18513 -21.60285 -20.35614 -19.18364 -17.03719 -16.36150 -15.73342 -15.39512 -15.17296 -14.97307 -14.43521 -13.93288 -13.72325 -13.38967 -13.17180 -13.13427 -12.48103 -12.05547 -11.80528 -11.46540 -11.13518 -11.08823 -10.82688 -10.80044 -10.77749 -10.53118 -10.15807 -9.91531 -9.81662 -9.38835 -9.12902 -8.82226 -8.54303 -7.31531 -6.14596 -4.14558 3.22490 3.32398 3.36927 4.19178 4.34709 4.58347 4.69598 4.79083 5.02215 5.12004 5.20105 5.34171 5.45662 5.58708 5.70753 5.77364 5.84277 5.87113 5.90746 5.93563 6.09776 6.13490 6.20520 6.24206 6.33727 6.39076 6.52815 6.65340 6.93876 7.04458 7.31236 7.43991 7.92705 7.95492 8.05569 8.61034 8.99932 9.48261 10.97521 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.009681 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.724145 B = 2891.714642 C = 3758.178680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.866 3.134 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.086 0.914 9 C 0.155 3.845 10 H 0.009 0.991 11 C 0.070 3.930 12 O -0.406 6.406 13 C 0.070 3.930 14 C 0.012 3.988 15 N -0.518 5.518 16 C 0.065 3.935 17 C 0.082 3.918 18 H 0.058 0.942 19 C -0.153 4.153 20 C -0.154 4.154 21 C 0.042 3.958 22 O -0.347 6.347 23 H 0.265 0.735 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.029 0.971 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.155 -6.437 -7.223 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.128 4.128 3 Si 0.693 3.307 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.542 4.542 8 H 0.104 0.896 9 C 0.048 3.952 10 H 0.026 0.974 11 C -0.007 4.007 12 O -0.325 6.325 13 C -0.007 4.007 14 C -0.117 4.117 15 N -0.243 5.243 16 C -0.063 4.063 17 C 0.024 3.976 18 H 0.076 0.924 19 C -0.191 4.191 20 C -0.192 4.192 21 C -0.036 4.036 22 O -0.266 6.266 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.820 -6.650 -6.687 12.913 hybrid contribution 0.661 1.585 -0.844 1.914 sum 9.481 -5.065 -7.532 13.126 Atomic orbital electron populations 1.69889 1.06109 1.27041 1.49707 1.25016 0.94718 0.98626 0.94391 0.87019 0.80532 0.84181 0.78941 1.20277 1.21198 1.18733 1.20817 0.88012 0.95016 1.50347 0.89607 1.20334 0.96539 0.88072 0.90273 0.97370 1.23165 0.77810 1.01334 0.98350 1.87858 1.23050 1.52919 1.68658 1.22450 0.97134 0.91152 0.90009 1.22825 0.91362 0.99781 0.97694 1.62230 1.06060 1.47548 1.08509 1.22177 1.03927 0.92452 0.87715 1.22829 0.94576 0.88394 0.91783 0.92405 1.22984 0.99561 1.00206 0.96365 1.23149 1.00687 0.96438 0.98879 1.23542 1.00223 0.93605 0.86194 1.89104 1.72931 1.34149 1.30400 0.92466 0.92823 0.89645 0.92942 0.90025 0.91035 0.95530 0.95333 0.87618 0.90248 0.91271 0.90331 0.90887 0.93086 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.29 27.01 -169.99 -4.59 16.70 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.37 6.79 56.52 0.38 -5.99 16 7 C -0.50 -13.91 7.40 -34.44 -0.25 -14.16 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.15 3.76 1.65 -68.75 -0.11 3.65 16 10 H 0.01 0.22 5.25 -51.92 -0.27 -0.05 16 11 C 0.07 1.61 6.27 37.21 0.23 1.84 16 12 O -0.41 -8.63 10.83 -35.23 -0.38 -9.01 16 13 C 0.07 1.24 7.01 37.21 0.26 1.50 16 14 C 0.01 0.22 5.44 -3.71 -0.02 0.20 16 15 N -0.52 -11.24 4.51 -227.72 -1.03 -12.27 16 16 C 0.07 1.31 4.23 -3.82 -0.02 1.30 16 17 C 0.08 1.37 3.38 -26.16 -0.09 1.28 16 18 H 0.06 0.90 6.29 -51.93 -0.33 0.57 16 19 C -0.15 -2.04 6.64 -25.20 -0.17 -2.20 16 20 C -0.15 -1.88 7.17 -24.60 -0.18 -2.05 16 21 C 0.04 0.56 7.72 38.34 0.30 0.86 16 22 O -0.35 -6.38 11.17 -35.23 -0.39 -6.78 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.09 1.97 8.14 -51.93 -0.42 1.54 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.14 6.27 -51.92 -0.33 0.82 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 31 H 0.11 2.46 6.69 -51.93 -0.35 2.11 16 32 H 0.08 1.08 7.70 -51.93 -0.40 0.68 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 288.98 15.07 4.35 4.35 Total: -1.00 -30.75 288.98 -7.31 -38.05 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.90 Total: 0.44 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.14 Total: -5.77 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.25 Total: -37.99 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.77 Total: -15.79 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.59 Total: 16.70 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.75 -7.31 -38.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259917922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.507 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds