Wall clock time and date at job start Mon Mar 30 2020 03:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99851 * 2 1 4 4 H 1.48496 * 109.46885 * 264.77398 * 3 2 1 5 5 H 1.48502 * 109.46957 * 24.77045 * 3 2 1 6 6 H 1.48499 * 109.47156 * 144.76908 * 3 2 1 7 7 C 1.37871 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00569 * 5.60955 * 7 2 1 9 9 C 1.50700 * 120.00398 * 185.60488 * 7 2 1 10 10 H 1.09010 * 109.54176 * 335.34082 * 9 7 2 11 11 C 1.53097 * 109.50950 * 95.44477 * 9 7 2 12 12 O 1.43014 * 109.26385 * 176.78749 * 11 9 7 13 13 C 1.43018 * 113.73525 * 301.33615 * 12 11 9 14 14 C 1.53096 * 109.26158 * 58.66512 * 13 12 11 15 15 N 1.47014 * 109.51003 * 215.23237 * 9 7 2 16 16 C 1.46903 * 111.00161 * 57.67229 * 15 9 7 17 17 C 1.52997 * 109.47101 * 189.68176 * 16 15 9 18 18 H 1.09001 * 109.99147 * 306.08479 * 17 16 15 19 19 C 1.54101 * 109.87874 * 184.99820 * 17 16 15 20 20 C 1.54811 * 104.30405 * 238.48132 * 19 17 16 21 21 C 1.55224 * 101.98743 * 339.25923 * 20 19 17 22 22 O 1.43745 * 109.87814 * 67.16470 * 17 16 15 23 23 H 0.96999 * 120.00426 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.50150 * 56.85043 * 11 9 7 25 25 H 1.09003 * 109.53963 * 296.74788 * 11 9 7 26 26 H 1.09003 * 109.50267 * 298.73184 * 13 12 11 27 27 H 1.08997 * 109.53736 * 178.62560 * 13 12 11 28 28 H 1.09008 * 109.50578 * 183.21508 * 14 13 12 29 29 H 1.08999 * 109.50683 * 63.08787 * 14 13 12 30 30 H 1.08999 * 109.47094 * 69.67868 * 16 15 9 31 31 H 1.08998 * 109.46760 * 309.68067 * 16 15 9 32 32 H 1.08999 * 110.48608 * 357.22134 * 19 17 16 33 33 H 1.08993 * 110.48977 * 119.73748 * 19 17 16 34 34 H 1.09003 * 110.90859 * 97.38118 * 20 19 17 35 35 H 1.08997 * 110.90394 * 220.98631 * 20 19 17 36 36 H 1.09003 * 110.52442 * 278.38833 * 21 20 19 37 37 H 1.09002 * 110.64580 * 155.43977 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6070 1.9827 -1.3942 5 1 1.3956 2.6821 0.5866 6 1 3.4870 1.4748 0.8077 7 6 2.0045 -1.1940 0.0005 8 1 1.4685 -2.1272 -0.0905 9 6 3.5061 -1.1971 0.1280 10 1 3.9038 -0.2446 -0.2226 11 6 3.8944 -1.4044 1.5943 12 8 5.3186 -1.4815 1.6990 13 6 5.8965 -2.5355 0.9242 14 6 5.5286 -2.3396 -0.5490 15 7 4.0653 -2.2900 -0.6809 16 6 3.6678 -2.1593 -2.0890 17 6 4.0589 -3.4282 -2.8492 18 1 5.1186 -3.6379 -2.7040 19 6 3.7604 -3.2525 -4.3507 20 6 2.7785 -4.4024 -4.6826 21 6 3.0434 -5.3979 -3.5214 22 8 3.2729 -4.5383 -2.3842 23 1 -0.4851 0.8400 -0.0004 24 1 3.4518 -2.3308 1.9604 25 1 3.5304 -0.5671 2.1897 26 1 5.5122 -3.4948 1.2708 27 1 6.9808 -2.5165 1.0342 28 1 5.9190 -3.1715 -1.1354 29 1 5.9586 -1.4054 -0.9104 30 1 4.1731 -1.3007 -2.5311 31 1 2.5888 -2.0171 -2.1503 32 1 3.2923 -2.2858 -4.5361 33 1 4.6749 -3.3510 -4.9356 34 1 1.7470 -4.0504 -4.6651 35 1 3.0182 -4.8526 -5.6459 36 1 3.9262 -6.0022 -3.7301 37 1 2.1734 -6.0327 -3.3534 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259917922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:44 Heat of formation + Delta-G solvation = -107.039011 kcal Electronic energy + Delta-G solvation = -18587.242866 eV Core-core repulsion = 15749.661386 eV Total energy + Delta-G solvation = -2837.581480 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.78964 -39.84555 -36.69915 -34.89532 -32.99660 -32.34477 -31.36086 -28.37191 -27.08706 -24.97150 -23.88883 -22.76194 -21.66286 -20.92580 -19.16782 -17.76785 -17.17960 -16.83103 -16.65530 -16.33260 -16.20595 -15.65059 -15.35476 -14.85210 -14.71771 -14.50695 -14.42931 -13.45572 -13.35379 -12.97766 -12.64999 -12.63752 -12.49336 -12.16768 -11.95374 -11.92328 -11.83973 -11.82355 -11.35270 -11.22531 -10.85793 -10.56033 -10.32739 -9.00763 -8.34188 -6.38220 1.26530 1.30748 1.41114 2.27033 2.83306 3.02454 3.08427 3.23018 3.71190 3.89455 4.01013 4.11216 4.18065 4.30657 4.32786 4.42800 4.46127 4.50744 4.61877 4.69578 4.76207 4.81987 4.85104 4.88536 4.94737 4.99187 5.05236 5.14881 5.22514 5.33687 5.43292 6.01101 6.12301 6.23911 6.38892 6.63028 6.73049 7.27538 8.82162 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.009681 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.724145 B = 2891.714642 C = 3758.178680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.499 4.499 8 H 0.036 0.964 9 C 0.159 3.841 10 H 0.002 0.998 11 C 0.078 3.922 12 O -0.411 6.411 13 C 0.063 3.937 14 C 0.012 3.988 15 N -0.536 5.536 16 C 0.067 3.933 17 C 0.085 3.915 18 H 0.077 0.923 19 C -0.150 4.150 20 C -0.149 4.149 21 C 0.035 3.965 22 O -0.391 6.391 23 H 0.268 0.732 24 H 0.044 0.956 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.031 0.969 30 H 0.035 0.965 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.033 -6.623 -8.393 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.175 4.175 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.051 3.949 10 H 0.019 0.981 11 C 0.000 4.000 12 O -0.330 6.330 13 C -0.014 4.014 14 C -0.116 4.116 15 N -0.261 5.261 16 C -0.061 4.061 17 C 0.027 3.973 18 H 0.095 0.905 19 C -0.188 4.188 20 C -0.186 4.186 21 C -0.042 4.042 22 O -0.310 6.310 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.143 0.857 28 H 0.119 0.881 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.719 -6.858 -7.869 15.693 hybrid contribution -0.235 1.493 -0.502 1.593 sum 11.484 -5.364 -8.371 15.190 Atomic orbital electron populations 1.70023 1.07876 1.28146 1.51533 1.25762 0.95399 1.02215 0.94093 0.85981 0.79422 0.79659 0.79424 1.19341 1.20518 1.17769 1.20803 0.90047 0.93111 1.49749 0.94588 1.20158 0.94155 0.88816 0.91730 0.98081 1.22863 0.79290 1.00686 0.97114 1.87843 1.21408 1.54350 1.69436 1.22802 0.99338 0.90149 0.89091 1.22947 0.88759 1.01150 0.98694 1.62145 1.08666 1.46176 1.09094 1.22132 1.01137 0.95158 0.87633 1.22836 0.95075 0.86274 0.93068 0.90544 1.23003 1.01252 1.00108 0.94416 1.23147 0.99590 0.95814 1.00091 1.23801 1.01608 0.93537 0.85204 1.89052 1.73519 1.35293 1.33171 0.92230 0.93787 0.90143 0.92885 0.85725 0.88140 0.95120 0.94668 0.92199 0.91273 0.87967 0.91991 0.87395 0.90509 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.92 13.96 21.44 0.30 -57.62 16 2 C 0.02 1.41 5.47 84.65 0.46 1.87 16 3 Si 0.93 44.44 27.01 68.60 1.85 46.29 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.25 -11.67 6.79 99.48 0.68 -10.99 16 7 C -0.50 -28.80 7.40 25.60 0.19 -28.61 16 8 H 0.04 2.39 8.06 -2.91 -0.02 2.36 16 9 C 0.16 7.81 1.65 44.18 0.07 7.88 16 10 H 0.00 0.08 5.25 -2.38 -0.01 0.07 16 11 C 0.08 3.55 6.27 72.01 0.45 4.01 16 12 O -0.41 -16.67 10.83 -148.98 -1.61 -18.28 16 13 C 0.06 2.03 7.01 72.01 0.50 2.53 16 14 C 0.01 0.42 5.44 86.31 0.47 0.89 16 15 N -0.54 -23.09 4.51 -874.38 -3.95 -27.04 16 16 C 0.07 2.73 4.23 86.30 0.36 3.09 16 17 C 0.09 2.71 3.38 30.97 0.10 2.81 16 18 H 0.08 2.13 6.29 -2.39 -0.02 2.11 16 19 C -0.15 -3.65 6.64 31.58 0.21 -3.44 16 20 C -0.15 -3.33 7.17 31.98 0.23 -3.10 16 21 C 0.03 0.88 7.72 72.75 0.56 1.44 16 22 O -0.39 -14.21 11.17 -148.98 -1.66 -15.88 16 23 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 24 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.08 3.70 8.14 -2.39 -0.02 3.68 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 28 H 0.10 2.82 6.27 -2.38 -0.01 2.81 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 1.34 8.12 -2.39 -0.02 1.32 16 31 H 0.06 2.94 6.69 -2.39 -0.02 2.93 16 32 H 0.07 1.82 7.70 -2.39 -0.02 1.80 16 33 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -69.35 288.98 -0.44 -69.79 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.00 Total: 13.35 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 3.62 Total: -10.62 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -3.65 Total: -84.66 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -3.28 Total: -34.16 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.85 Total: 46.29 kcal Total: -69.35 -0.44 -69.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259917922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.245 kcal (2) G-P(sol) polarization free energy of solvation -69.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds