Wall clock time and date at job start Mon Mar 30 2020 03:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99971 * 2 1 4 4 H 1.48495 * 109.46870 * 269.99688 * 3 2 1 5 5 H 1.48494 * 109.47173 * 29.99773 * 3 2 1 6 6 H 1.48501 * 109.46715 * 150.00250 * 3 2 1 7 7 C 1.37872 * 119.99528 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.08991 * 109.50684 * 300.08825 * 9 7 2 11 11 C 1.53100 * 109.54069 * 60.19650 * 9 7 2 12 12 O 1.43015 * 109.25903 * 176.80732 * 11 9 7 13 13 C 1.43015 * 113.73821 * 301.32932 * 12 11 9 14 14 C 1.53101 * 109.25823 * 58.66954 * 13 12 11 15 15 N 1.47009 * 109.50866 * 179.97438 * 9 7 2 16 16 C 1.46904 * 110.99717 * 57.63225 * 15 9 7 17 17 C 1.52995 * 109.47206 * 75.99085 * 16 15 9 18 18 H 1.09003 * 110.27708 * 56.06407 * 17 16 15 19 19 C 1.54947 * 110.30912 * 178.15362 * 17 16 15 20 20 C 1.55412 * 100.89212 * 155.28598 * 19 17 16 21 21 C 1.54384 * 102.30916 * 325.99221 * 20 19 17 22 22 O 1.43229 * 107.59104 * 21.28508 * 21 20 19 23 23 H 0.97009 * 119.99706 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.50749 * 296.74335 * 11 9 7 25 25 H 1.08997 * 109.50737 * 56.87029 * 11 9 7 26 26 H 1.08997 * 109.50695 * 178.60372 * 13 12 11 27 27 H 1.09005 * 109.50392 * 298.69200 * 13 12 11 28 28 H 1.09003 * 109.50656 * 183.22290 * 14 13 12 29 29 H 1.08993 * 109.50565 * 63.08499 * 14 13 12 30 30 H 1.08999 * 109.47232 * 315.98752 * 16 15 9 31 31 H 1.09004 * 109.46906 * 195.98797 * 16 15 9 32 32 H 1.09000 * 111.12878 * 273.27886 * 19 17 16 33 33 H 1.09004 * 111.12346 * 37.44196 * 19 17 16 34 34 H 1.09006 * 110.88490 * 207.75253 * 20 19 17 35 35 H 1.08999 * 110.93739 * 84.25256 * 20 19 17 36 36 H 1.08998 * 109.83075 * 261.76939 * 21 20 19 37 37 H 1.09007 * 109.90196 * 140.84375 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 1 0.6233 -2.5562 0.8909 11 6 0.3734 -2.5849 -1.2499 12 8 -0.2815 -3.8560 -1.2807 13 6 0.6185 -4.9674 -1.2818 14 6 1.4986 -4.9058 -0.0305 15 7 2.2055 -3.6172 0.0015 16 6 3.1066 -3.5402 1.1591 17 6 2.3604 -3.9893 2.4170 18 1 1.9532 -4.9907 2.2774 19 6 3.3071 -3.9598 3.6433 20 6 2.2833 -3.7935 4.8007 21 6 1.1907 -2.9179 4.1503 22 8 1.3085 -3.0625 2.7302 23 1 -0.4850 0.8402 -0.0004 24 1 -0.3733 -1.7912 -1.2259 25 1 0.9948 -2.4740 -2.1384 26 1 0.0491 -5.8968 -1.2808 27 1 1.2466 -4.9262 -2.1717 28 1 2.2245 -5.7186 -0.0557 29 1 0.8749 -5.0013 0.8582 30 1 3.4478 -2.5128 1.2864 31 1 3.9657 -4.1907 0.9947 32 1 3.8589 -4.8952 3.7362 33 1 3.9861 -3.1085 3.5950 34 1 2.7365 -3.2815 5.6497 35 1 1.8776 -4.7588 5.1036 36 1 1.3382 -1.8746 4.4293 37 1 0.2053 -3.2517 4.4756 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259917927.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:46 Heat of formation + Delta-G solvation = -100.873798 kcal Electronic energy + Delta-G solvation = -19020.627321 eV Core-core repulsion = 16183.313185 eV Total energy + Delta-G solvation = -2837.314136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.91875 -39.57046 -36.53917 -34.94924 -33.00531 -31.57192 -31.16484 -28.16665 -27.10588 -24.87801 -23.98971 -22.44300 -22.24573 -20.53702 -18.48878 -17.87930 -17.06555 -16.82770 -16.73050 -16.34596 -15.72875 -15.41660 -15.30967 -14.91339 -14.57767 -14.15477 -13.93147 -13.37356 -12.93816 -12.87075 -12.62752 -12.55909 -12.39800 -12.32367 -12.19213 -11.90804 -11.83771 -11.56889 -11.30711 -10.88690 -10.60762 -10.36094 -10.17387 -8.79774 -8.08217 -6.16025 1.41766 1.42484 1.52345 2.43678 2.96438 3.15226 3.29046 3.49203 3.66149 3.90104 4.01407 4.18912 4.21972 4.35671 4.43957 4.48850 4.63513 4.69268 4.75577 4.84383 4.85414 4.90650 4.91002 4.99503 5.03198 5.05640 5.21684 5.32221 5.50527 5.70702 5.82028 6.11464 6.34017 6.37544 6.55660 6.77090 6.98216 7.49905 8.99752 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.011967 C = 0.008308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.982080 B = 2339.293973 C = 3369.321344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.504 4.504 8 H 0.057 0.943 9 C 0.194 3.806 10 H 0.009 0.991 11 C 0.077 3.923 12 O -0.422 6.422 13 C 0.058 3.942 14 C 0.018 3.982 15 N -0.542 5.542 16 C 0.060 3.940 17 C 0.041 3.959 18 H 0.068 0.932 19 C -0.139 4.139 20 C -0.140 4.140 21 C 0.034 3.966 22 O -0.391 6.391 23 H 0.260 0.740 24 H 0.089 0.911 25 H 0.021 0.979 26 H 0.114 0.886 27 H 0.052 0.948 28 H 0.102 0.898 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.286 -9.986 6.837 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.086 3.914 10 H 0.027 0.973 11 C 0.000 4.000 12 O -0.342 6.342 13 C -0.018 4.018 14 C -0.111 4.111 15 N -0.265 5.265 16 C -0.068 4.068 17 C -0.018 4.018 18 H 0.086 0.914 19 C -0.177 4.177 20 C -0.177 4.177 21 C -0.043 4.043 22 O -0.311 6.311 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.039 0.961 26 H 0.132 0.868 27 H 0.070 0.930 28 H 0.120 0.880 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.098 -9.735 6.238 13.072 hybrid contribution -0.147 1.144 0.769 1.386 sum 5.951 -8.592 7.007 12.583 Atomic orbital electron populations 1.70009 1.07199 1.27102 1.51991 1.25687 0.95608 1.02297 0.95084 0.85558 0.78587 0.79346 0.78129 1.20165 1.21244 1.19266 1.21223 0.92859 0.90695 1.49434 0.92486 1.19671 0.89958 0.88596 0.93145 0.97338 1.22819 0.96577 0.83215 0.97396 1.87847 1.35298 1.15871 1.95158 1.22792 0.92331 0.89838 0.96870 1.22813 0.97323 0.93369 0.97546 1.62439 1.20961 1.02373 1.40762 1.22410 0.95333 1.02341 0.86739 1.23890 0.88142 0.92765 0.96954 0.91383 1.23255 0.97742 1.04036 0.92682 1.23069 0.95262 1.00728 0.98675 1.23255 0.99460 0.99714 0.81839 1.88786 1.55309 1.64915 1.22131 0.93068 0.89275 0.96112 0.86774 0.93013 0.87975 0.95589 0.91568 0.88369 0.87402 0.90790 0.88480 0.89306 0.93036 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.20 11.37 21.45 0.24 -54.96 16 2 C 0.01 0.65 5.31 84.65 0.45 1.09 16 3 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.50 -28.36 7.71 25.60 0.20 -28.16 16 8 H 0.06 3.18 6.65 -2.91 -0.02 3.16 16 9 C 0.19 10.30 1.61 44.18 0.07 10.38 16 10 H 0.01 0.56 5.63 -2.39 -0.01 0.54 16 11 C 0.08 4.13 6.02 72.02 0.43 4.56 16 12 O -0.42 -20.42 10.83 -148.98 -1.61 -22.04 16 13 C 0.06 2.16 7.01 72.02 0.50 2.67 16 14 C 0.02 0.65 4.81 86.32 0.41 1.06 16 15 N -0.54 -23.62 4.74 -874.41 -4.14 -27.76 16 16 C 0.06 2.26 5.16 86.30 0.45 2.71 16 17 C 0.04 1.39 2.78 31.26 0.09 1.48 16 18 H 0.07 2.19 6.17 -2.39 -0.01 2.17 16 19 C -0.14 -3.43 6.58 32.09 0.21 -3.22 16 20 C -0.14 -3.23 7.02 31.89 0.22 -3.01 16 21 C 0.03 1.12 7.80 72.45 0.56 1.69 16 22 O -0.39 -16.86 8.27 -148.98 -1.23 -18.10 16 23 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 24 H 0.09 5.33 6.19 -2.39 -0.01 5.31 16 25 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 27 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.03 1.02 6.28 -2.39 -0.02 1.01 16 30 H 0.07 2.89 5.95 -2.39 -0.01 2.87 16 31 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 34 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -68.31 282.51 -0.07 -68.38 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 1.05 Total: 16.40 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 3.60 Total: -8.75 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -3.90 Total: -82.72 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -2.85 Total: -40.13 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -68.31 -0.07 -68.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259917927.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.493 kcal (2) G-P(sol) polarization free energy of solvation -68.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds