Wall clock time and date at job start Mon Mar 30 2020 03:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00280 * 2 1 4 4 H 1.48504 * 109.47027 * 274.99150 * 3 2 1 5 5 H 1.48503 * 109.47168 * 34.99103 * 3 2 1 6 6 H 1.48498 * 109.47045 * 154.98982 * 3 2 1 7 7 C 1.38812 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00140 * 172.99455 * 7 2 1 9 9 N 1.36942 * 119.99681 * 353.26978 * 7 2 1 10 10 C 1.47023 * 125.65003 * 4.92936 * 9 7 2 11 11 C 1.54328 * 107.26806 * 181.02158 * 10 9 7 12 12 C 1.55153 * 102.94160 * 22.19214 * 11 10 9 13 13 H 1.09003 * 111.00404 * 82.57289 * 12 11 10 14 14 O 1.42903 * 111.00154 * 206.42013 * 12 11 10 15 15 C 1.42904 * 113.99748 * 210.00336 * 14 12 11 16 16 H 1.08998 * 109.48089 * 309.99961 * 15 14 12 17 17 C 1.53098 * 109.48004 * 189.97882 * 15 14 12 18 18 C 1.53176 * 109.16572 * 182.41913 * 17 15 14 19 19 C 1.53184 * 109.04255 * 56.96067 * 18 17 15 20 20 C 1.53092 * 109.16433 * 303.02657 * 19 18 17 21 21 O 1.42895 * 109.48304 * 70.02568 * 15 14 12 22 22 C 1.47426 * 125.64388 * 184.62207 * 9 7 2 23 23 H 0.97009 * 119.99923 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.87998 * 300.44126 * 10 9 7 25 25 H 1.09000 * 109.88236 * 61.45227 * 10 9 7 26 26 H 1.09003 * 110.71728 * 140.55796 * 11 10 9 27 27 H 1.08996 * 110.71756 * 263.65224 * 11 10 9 28 28 H 1.08999 * 109.52079 * 302.31898 * 17 15 14 29 29 H 1.08999 * 109.51833 * 62.49662 * 17 15 14 30 30 H 1.09004 * 109.53176 * 297.09883 * 18 17 15 31 31 H 1.09001 * 109.61530 * 176.87970 * 18 17 15 32 32 H 1.09004 * 109.51758 * 183.11799 * 19 18 17 33 33 H 1.09000 * 109.57244 * 62.96568 * 19 18 17 34 34 H 1.08997 * 109.48261 * 297.62712 * 20 19 18 35 35 H 1.08994 * 109.47737 * 177.59026 * 20 19 18 36 36 H 1.09003 * 110.36693 * 274.74641 * 22 9 7 37 37 H 1.08997 * 110.36961 * 37.06815 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5045 2.6199 0.8029 6 1 3.5965 1.4119 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0841 -1.2057 -0.1146 9 7 1.3325 -2.3840 0.1379 10 6 -0.1293 -2.5323 0.1926 11 6 -0.4307 -4.0342 0.3798 12 6 0.8884 -4.5803 0.9872 13 1 0.9225 -4.4112 2.0634 14 8 1.0570 -5.9664 0.6830 15 6 1.7862 -6.6942 1.6734 16 1 2.7089 -6.1638 1.9083 17 6 2.1210 -8.0891 1.1384 18 6 2.8491 -8.8837 2.2269 19 6 1.9693 -8.9370 3.4798 20 6 1.6406 -7.5093 3.9242 21 8 0.9926 -6.8165 2.8554 22 6 1.9476 -3.7191 0.2504 23 1 -0.4850 0.8401 0.0004 24 1 -0.5279 -1.9664 1.0345 25 1 -0.5731 -2.1758 -0.7369 26 1 -1.2617 -4.1776 1.0705 27 1 -0.6420 -4.5075 -0.5790 28 1 1.2006 -8.6050 0.8650 29 1 2.7629 -7.9986 0.2621 30 1 3.7936 -8.3944 2.4652 31 1 3.0420 -9.8965 1.8734 32 1 2.5030 -9.4532 4.2778 33 1 1.0457 -9.4703 3.2549 34 1 2.5616 -6.9898 4.1886 35 1 0.9796 -7.5414 4.7902 36 1 2.1505 -4.1279 -0.7394 37 1 2.8659 -3.6656 0.8352 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259926481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:18 Heat of formation + Delta-G solvation = -76.197361 kcal Electronic energy + Delta-G solvation = -17934.183572 eV Core-core repulsion = 15097.939486 eV Total energy + Delta-G solvation = -2836.244086 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.63079 -37.73687 -35.54915 -33.76963 -32.19085 -30.36704 -29.03683 -27.03148 -24.95920 -24.14662 -23.21575 -20.60524 -20.15625 -19.87918 -17.26142 -16.92097 -16.46589 -15.75297 -14.89547 -14.64096 -14.41263 -14.24028 -13.56097 -13.29946 -12.96640 -12.76107 -12.45583 -12.21264 -11.85435 -11.37795 -11.31556 -11.25291 -11.09312 -10.91995 -10.74371 -10.54745 -10.18124 -10.07996 -9.73097 -9.68877 -9.47723 -9.16972 -8.53914 -6.80179 -5.69250 -3.02138 3.41526 3.44848 3.47829 3.49888 4.07280 4.53384 4.62428 4.66524 4.77970 4.96309 5.02468 5.26311 5.40317 5.47322 5.52070 5.55487 5.61113 5.65531 5.74533 5.81090 5.86656 5.89712 5.91738 6.11862 6.35522 6.51816 6.62020 6.73296 6.74968 7.19629 7.58974 7.63373 7.67586 7.86330 8.28651 9.24138 9.84629 10.51247 11.42766 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046509 B = 0.004953 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.891134 B = 5651.418440 C = 5788.918435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.177 3.823 11 C -0.138 4.138 12 C 0.073 3.927 13 H 0.075 0.925 14 O -0.356 6.356 15 C 0.255 3.745 16 H 0.052 0.948 17 C -0.140 4.140 18 C -0.120 4.120 19 C -0.159 4.159 20 C 0.071 3.929 21 O -0.404 6.404 22 C 0.120 3.880 23 H 0.252 0.748 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.027 0.973 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 -16.950 6.238 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.177 4.177 12 C 0.015 3.985 13 H 0.093 0.907 14 O -0.275 6.275 15 C 0.159 3.841 16 H 0.069 0.931 17 C -0.178 4.178 18 C -0.158 4.158 19 C -0.197 4.197 20 C -0.006 4.006 21 O -0.325 6.325 22 C -0.007 4.007 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.045 0.955 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.553 -16.724 6.064 18.141 hybrid contribution 0.762 0.885 0.163 1.179 sum 4.315 -15.839 6.226 17.558 Atomic orbital electron populations 1.69983 1.04935 1.25059 1.56765 1.24826 0.95704 0.97658 1.02148 0.86111 0.78675 0.83571 0.77483 1.21653 1.21602 1.20641 1.19061 0.91104 0.82440 1.43173 0.90412 1.44358 1.01807 1.00591 1.86380 1.21182 0.84406 0.88005 1.01124 1.22989 0.95370 0.98996 1.00314 1.23505 0.97422 0.78580 0.99031 0.90693 1.88005 1.76487 1.21784 1.41207 1.22890 0.88912 0.91942 0.80363 0.93084 1.22013 1.01961 0.94797 0.99048 1.21590 0.98511 1.00675 0.94997 1.22245 1.00898 0.98183 0.98354 1.22470 0.97786 0.90942 0.89399 1.87850 1.44094 1.76865 1.23711 1.21937 0.94503 0.87096 0.97155 0.93722 0.93211 0.93730 0.91791 0.91608 0.90243 0.90072 0.91604 0.90932 0.90763 0.90847 0.93164 0.88751 0.95542 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.62 10.35 55.49 0.57 -27.05 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 22.41 29.56 -169.99 -5.02 17.38 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.61 10.27 -15.06 -0.15 -6.77 16 8 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 9 N -0.60 -16.25 3.39 -169.94 -0.58 -16.83 16 10 C 0.18 4.55 5.38 -3.06 -0.02 4.54 16 11 C -0.14 -2.91 6.68 -24.90 -0.17 -3.07 16 12 C 0.07 1.47 3.42 -24.47 -0.08 1.38 16 13 H 0.07 1.53 7.55 -51.93 -0.39 1.14 16 14 O -0.36 -6.55 10.06 -59.04 -0.59 -7.15 16 15 C 0.25 3.82 3.06 37.21 0.11 3.94 16 16 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 17 C -0.14 -1.64 5.79 -26.59 -0.15 -1.80 16 18 C -0.12 -1.07 6.03 -26.54 -0.16 -1.23 16 19 C -0.16 -1.38 6.14 -26.59 -0.16 -1.54 16 20 C 0.07 0.76 6.84 37.21 0.25 1.01 16 21 O -0.40 -6.15 10.16 -59.04 -0.60 -6.75 16 22 C 0.12 2.70 6.97 -2.41 -0.02 2.68 16 23 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.05 1.38 7.30 -51.93 -0.38 1.00 16 25 H 0.04 1.24 7.59 -51.93 -0.39 0.85 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -31.83 295.30 -8.62 -40.44 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -6.21 Total: -3.34 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -0.64 Total: -1.16 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.00 Total: -43.88 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.19 Total: -13.90 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.83 -8.62 -40.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.753 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds