Wall clock time and date at job start Mon Mar 30 2020 03:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00280 * 2 1 4 4 H 1.48504 * 109.47027 * 274.99150 * 3 2 1 5 5 H 1.48503 * 109.47168 * 34.99103 * 3 2 1 6 6 H 1.48498 * 109.47045 * 154.98982 * 3 2 1 7 7 C 1.38812 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00140 * 172.99455 * 7 2 1 9 9 N 1.36942 * 119.99681 * 353.26978 * 7 2 1 10 10 C 1.47023 * 125.65003 * 4.92936 * 9 7 2 11 11 C 1.54328 * 107.26806 * 181.02158 * 10 9 7 12 12 C 1.55153 * 102.94160 * 22.19214 * 11 10 9 13 13 H 1.09003 * 111.00404 * 82.57289 * 12 11 10 14 14 O 1.42903 * 111.00154 * 206.42013 * 12 11 10 15 15 C 1.42904 * 113.99748 * 210.00336 * 14 12 11 16 16 H 1.08998 * 109.48089 * 309.99961 * 15 14 12 17 17 C 1.53098 * 109.48004 * 189.97882 * 15 14 12 18 18 C 1.53176 * 109.16572 * 182.41913 * 17 15 14 19 19 C 1.53184 * 109.04255 * 56.96067 * 18 17 15 20 20 C 1.53092 * 109.16433 * 303.02657 * 19 18 17 21 21 O 1.42895 * 109.48304 * 70.02568 * 15 14 12 22 22 C 1.47426 * 125.64388 * 184.62207 * 9 7 2 23 23 H 0.97009 * 119.99923 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.87998 * 300.44126 * 10 9 7 25 25 H 1.09000 * 109.88236 * 61.45227 * 10 9 7 26 26 H 1.09003 * 110.71728 * 140.55796 * 11 10 9 27 27 H 1.08996 * 110.71756 * 263.65224 * 11 10 9 28 28 H 1.08999 * 109.52079 * 302.31898 * 17 15 14 29 29 H 1.08999 * 109.51833 * 62.49662 * 17 15 14 30 30 H 1.09004 * 109.53176 * 297.09883 * 18 17 15 31 31 H 1.09001 * 109.61530 * 176.87970 * 18 17 15 32 32 H 1.09004 * 109.51758 * 183.11799 * 19 18 17 33 33 H 1.09000 * 109.57244 * 62.96568 * 19 18 17 34 34 H 1.08997 * 109.48261 * 297.62712 * 20 19 18 35 35 H 1.08994 * 109.47737 * 177.59026 * 20 19 18 36 36 H 1.09003 * 110.36693 * 274.74641 * 22 9 7 37 37 H 1.08997 * 110.36961 * 37.06815 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5045 2.6199 0.8029 6 1 3.5965 1.4119 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0841 -1.2057 -0.1146 9 7 1.3325 -2.3840 0.1379 10 6 -0.1293 -2.5323 0.1926 11 6 -0.4307 -4.0342 0.3798 12 6 0.8884 -4.5803 0.9872 13 1 0.9225 -4.4112 2.0634 14 8 1.0570 -5.9664 0.6830 15 6 1.7862 -6.6942 1.6734 16 1 2.7089 -6.1638 1.9083 17 6 2.1210 -8.0891 1.1384 18 6 2.8491 -8.8837 2.2269 19 6 1.9693 -8.9370 3.4798 20 6 1.6406 -7.5093 3.9242 21 8 0.9926 -6.8165 2.8554 22 6 1.9476 -3.7191 0.2504 23 1 -0.4850 0.8401 0.0004 24 1 -0.5279 -1.9664 1.0345 25 1 -0.5731 -2.1758 -0.7369 26 1 -1.2617 -4.1776 1.0705 27 1 -0.6420 -4.5075 -0.5790 28 1 1.2006 -8.6050 0.8650 29 1 2.7629 -7.9986 0.2621 30 1 3.7936 -8.3944 2.4652 31 1 3.0420 -9.8965 1.8734 32 1 2.5030 -9.4532 4.2778 33 1 1.0457 -9.4703 3.2549 34 1 2.5616 -6.9898 4.1886 35 1 0.9796 -7.5414 4.7902 36 1 2.1505 -4.1279 -0.7394 37 1 2.8659 -3.6656 0.8352 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259926481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:18 Heat of formation + Delta-G solvation = -96.155565 kcal Electronic energy + Delta-G solvation = -17935.049024 eV Core-core repulsion = 15097.939486 eV Total energy + Delta-G solvation = -2837.109538 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.76058 -39.31074 -37.16565 -34.64927 -34.20912 -31.57512 -30.82051 -28.86013 -26.53646 -25.52371 -24.21812 -22.08008 -21.98458 -21.11992 -18.98503 -18.57081 -17.56628 -16.96003 -16.64449 -16.19053 -15.63648 -15.49887 -15.00488 -14.71768 -14.38837 -14.04205 -13.78256 -13.72725 -13.59763 -13.07252 -12.92737 -12.63144 -12.31366 -12.24244 -12.05670 -12.03430 -11.86992 -11.82545 -11.48332 -11.41734 -10.73247 -10.68930 -10.44653 -8.95611 -7.88229 -5.24876 1.46153 1.48518 1.58179 2.24657 2.50242 2.95416 3.30902 3.67983 3.73964 3.81328 3.90412 4.00703 4.02146 4.06335 4.12884 4.17517 4.45535 4.57382 4.63598 4.71572 4.80096 4.86660 4.89609 4.95765 5.00908 5.05259 5.10481 5.15897 5.35947 5.41635 5.58703 5.68798 6.04332 6.16577 6.34045 7.05531 7.71430 8.37127 9.22965 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046509 B = 0.004953 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.891134 B = 5651.418440 C = 5788.918435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.063 4.063 3 Si 0.983 3.017 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.250 4.250 8 H 0.085 0.915 9 N -0.625 5.625 10 C 0.187 3.813 11 C -0.127 4.127 12 C 0.093 3.907 13 H 0.072 0.928 14 O -0.366 6.366 15 C 0.246 3.754 16 H 0.053 0.947 17 C -0.136 4.136 18 C -0.117 4.117 19 C -0.154 4.154 20 C 0.059 3.941 21 O -0.432 6.432 22 C 0.118 3.882 23 H 0.249 0.751 24 H 0.020 0.980 25 H 0.012 0.988 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.028 0.972 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.270 -18.428 7.035 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.811 3.189 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.191 1.191 7 C -0.379 4.379 8 H 0.102 0.898 9 N -0.353 5.353 10 C 0.062 3.938 11 C -0.165 4.165 12 C 0.034 3.966 13 H 0.090 0.910 14 O -0.285 6.285 15 C 0.151 3.849 16 H 0.071 0.929 17 C -0.174 4.174 18 C -0.154 4.154 19 C -0.192 4.192 20 C -0.016 4.016 21 O -0.354 6.354 22 C -0.007 4.007 23 H 0.058 0.942 24 H 0.038 0.962 25 H 0.030 0.970 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.045 0.955 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.983 -18.246 6.869 20.123 hybrid contribution 0.344 1.271 -0.059 1.318 sum 5.326 -16.975 6.810 19.050 Atomic orbital electron populations 1.70198 1.06485 1.25568 1.57647 1.25735 0.96641 1.01205 1.02062 0.85003 0.77811 0.78737 0.77392 1.21243 1.21786 1.19101 1.19487 0.91725 0.83580 1.43073 0.89763 1.44658 1.02486 1.01782 1.86356 1.20915 0.83969 0.90751 0.98184 1.22829 0.96631 0.95625 1.01405 1.23084 0.95627 0.79685 0.98178 0.90988 1.87982 1.77101 1.20442 1.42934 1.23209 0.88266 0.93176 0.80274 0.92940 1.22043 1.02148 0.92978 1.00258 1.21626 0.98368 1.01327 0.94088 1.22225 1.01066 0.96805 0.99059 1.22798 0.98253 0.91992 0.88605 1.87799 1.45131 1.77942 1.24536 1.22052 0.95434 0.85648 0.97599 0.94167 0.96181 0.96986 0.89979 0.90783 0.90877 0.89568 0.90800 0.88828 0.88098 0.91207 0.92454 0.87529 0.95462 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.59 10.35 21.65 0.22 -58.36 16 2 C -0.06 -3.69 5.48 84.86 0.46 -3.22 16 3 Si 0.98 46.35 29.56 68.60 2.03 48.38 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.25 -14.54 10.27 84.03 0.86 -13.68 16 8 H 0.08 4.64 7.84 -2.91 -0.02 4.62 16 9 N -0.62 -34.17 3.39 -691.55 -2.35 -36.51 16 10 C 0.19 9.87 5.38 86.73 0.47 10.34 16 11 C -0.13 -5.31 6.68 31.78 0.21 -5.10 16 12 C 0.09 3.70 3.42 32.06 0.11 3.81 16 13 H 0.07 2.91 7.55 -2.39 -0.02 2.89 16 14 O -0.37 -13.07 10.06 -126.21 -1.27 -14.34 16 15 C 0.25 7.04 3.06 72.01 0.22 7.26 16 16 H 0.05 1.47 8.09 -2.39 -0.02 1.45 16 17 C -0.14 -2.92 5.79 30.69 0.18 -2.74 16 18 C -0.12 -1.72 6.03 30.71 0.19 -1.53 16 19 C -0.15 -2.20 6.14 30.69 0.19 -2.01 16 20 C 0.06 1.14 6.84 72.01 0.49 1.63 16 21 O -0.43 -12.57 10.16 -126.21 -1.28 -13.85 16 22 C 0.12 5.30 6.97 86.93 0.61 5.91 16 23 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 24 H 0.02 1.16 7.30 -2.39 -0.02 1.14 16 25 H 0.01 0.70 7.59 -2.39 -0.02 0.68 16 26 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 27 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -69.00 295.30 2.36 -66.64 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 1.02 Total: 7.39 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 3.99 Total: 0.66 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -2.12 Total: -94.88 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -2.55 Total: -28.19 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -69.00 2.36 -66.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.518 kcal (2) G-P(sol) polarization free energy of solvation -68.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds