Wall clock time and date at job start Mon Mar 30 2020 03:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 119.99967 * 2 1 4 4 H 1.48501 * 109.47317 * 269.99832 * 3 2 1 5 5 H 1.48493 * 109.47218 * 29.99931 * 3 2 1 6 6 H 1.48503 * 109.47133 * 149.99686 * 3 2 1 7 7 C 1.38813 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99685 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00281 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64594 * 359.97114 * 9 7 2 11 11 C 1.54909 * 104.83351 * 155.90840 * 10 9 7 12 12 C 1.55158 * 101.61642 * 36.99324 * 11 10 9 13 13 H 1.08999 * 110.72042 * 82.87870 * 12 11 10 14 14 O 1.42896 * 110.72122 * 206.15525 * 12 11 10 15 15 C 1.42903 * 113.99941 * 209.99699 * 14 12 11 16 16 H 1.09001 * 109.47918 * 54.98022 * 15 14 12 17 17 C 1.53093 * 109.48114 * 175.00093 * 15 14 12 18 18 C 1.53173 * 109.16454 * 177.59334 * 17 15 14 19 19 C 1.53181 * 109.03617 * 303.01897 * 18 17 15 20 20 C 1.53089 * 109.16196 * 56.98066 * 19 18 17 21 21 O 1.42902 * 109.41758 * 302.38895 * 20 19 18 22 22 C 1.47016 * 125.64965 * 180.02562 * 9 7 2 23 23 H 0.96996 * 120.00056 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.36544 * 37.07261 * 10 9 7 25 25 H 1.09002 * 110.46474 * 274.79611 * 10 9 7 26 26 H 1.09002 * 111.00594 * 155.08642 * 11 10 9 27 27 H 1.09002 * 111.00655 * 278.89906 * 11 10 9 28 28 H 1.09001 * 109.51944 * 297.50108 * 17 15 14 29 29 H 1.08999 * 109.52204 * 57.62559 * 17 15 14 30 30 H 1.09008 * 109.54537 * 62.88332 * 18 17 15 31 31 H 1.08995 * 109.54581 * 183.06215 * 18 17 15 32 32 H 1.09002 * 109.52547 * 176.88429 * 19 18 17 33 33 H 1.09001 * 109.52265 * 297.01116 * 19 18 17 34 34 H 1.08997 * 109.48354 * 62.37405 * 20 19 18 35 35 H 1.08999 * 109.48175 * 182.39775 * 20 19 18 36 36 H 1.09000 * 109.88531 * 300.43071 * 22 9 7 37 37 H 1.08998 * 109.88872 * 61.60792 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0006 11 6 -0.4016 -3.9326 -0.6107 12 6 0.7784 -4.7532 -0.0261 13 1 0.5460 -5.0989 0.9812 14 8 1.0999 -5.8541 -0.8784 15 6 1.6311 -6.9874 -0.1887 16 1 0.9402 -7.2908 0.5979 17 6 1.8208 -8.1426 -1.1751 18 6 2.4460 -9.3329 -0.4413 19 6 3.7667 -8.8895 0.1955 20 6 3.5019 -7.7054 1.1290 21 8 2.8921 -6.6451 0.3901 22 6 1.9319 -3.7274 0.0016 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5992 -1.7592 -0.6154 25 1 -0.5291 -2.4858 1.0183 26 1 -1.3590 -4.3329 -0.2771 27 1 -0.3526 -3.8988 -1.6991 28 1 0.8536 -8.4344 -1.5847 29 1 2.4786 -7.8262 -1.9845 30 1 1.7652 -9.6808 0.3358 31 1 2.6340 -10.1400 -1.1494 32 1 4.1914 -9.7154 0.7662 33 1 4.4652 -8.5895 -0.5857 34 1 2.8357 -8.0182 1.9329 35 1 4.4444 -7.3583 1.5523 36 1 2.5584 -3.8515 -0.8817 37 1 2.5281 -3.8639 0.9038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259926484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:20 Heat of formation + Delta-G solvation = -94.333609 kcal Electronic energy + Delta-G solvation = -18035.943866 eV Core-core repulsion = 15198.913334 eV Total energy + Delta-G solvation = -2837.030532 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.75765 -39.27813 -37.15183 -34.63852 -34.19868 -31.55902 -30.80042 -28.81837 -26.51046 -25.51752 -24.20792 -22.09257 -21.97388 -21.08514 -18.97424 -18.62050 -17.43125 -16.97635 -16.62313 -16.17788 -15.75747 -15.50079 -15.08119 -14.55383 -14.32195 -13.94398 -13.78200 -13.58397 -13.52860 -13.22904 -12.90530 -12.68382 -12.32710 -12.07915 -12.03701 -12.02347 -11.88540 -11.78861 -11.41471 -11.34632 -10.81061 -10.76400 -10.41613 -8.92544 -7.79378 -5.24713 1.46059 1.49057 1.57824 2.32044 2.50542 2.98123 3.30881 3.69229 3.78717 3.85589 3.88786 3.96860 4.01693 4.10324 4.14325 4.16273 4.45081 4.61281 4.64954 4.79353 4.80168 4.86555 4.95434 4.98325 5.03259 5.06814 5.10757 5.16443 5.36518 5.42757 5.58025 5.75515 6.11650 6.27670 6.37746 7.08571 7.74187 8.38620 9.23051 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045182 B = 0.005277 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.570442 B = 5305.233477 C = 5731.767341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.985 3.015 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.246 4.246 8 H 0.076 0.924 9 N -0.626 5.626 10 C 0.154 3.846 11 C -0.126 4.126 12 C 0.097 3.903 13 H 0.079 0.921 14 O -0.370 6.370 15 C 0.244 3.756 16 H 0.064 0.936 17 C -0.138 4.138 18 C -0.114 4.114 19 C -0.155 4.155 20 C 0.060 3.940 21 O -0.432 6.432 22 C 0.130 3.870 23 H 0.250 0.750 24 H 0.080 0.920 25 H -0.003 1.003 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.016 0.984 37 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 -20.117 1.177 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.256 4.256 3 Si 0.813 3.187 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.354 5.354 10 C 0.030 3.970 11 C -0.164 4.164 12 C 0.039 3.961 13 H 0.097 0.903 14 O -0.288 6.288 15 C 0.149 3.851 16 H 0.081 0.919 17 C -0.175 4.175 18 C -0.151 4.151 19 C -0.193 4.193 20 C -0.016 4.016 21 O -0.354 6.354 22 C 0.004 3.996 23 H 0.059 0.941 24 H 0.098 0.902 25 H 0.015 0.985 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.034 0.966 37 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 3.121 -19.744 0.960 20.012 hybrid contribution 0.407 0.994 0.296 1.114 sum 3.528 -18.750 1.256 19.120 Atomic orbital electron populations 1.70016 1.06189 1.25280 1.58321 1.25666 0.96749 1.00967 1.02261 0.84986 0.77504 0.78629 0.77621 1.21037 1.21447 1.19676 1.19455 0.90948 0.83805 1.43232 0.90628 1.44746 1.02927 1.00702 1.86983 1.21757 0.84003 0.94229 0.97056 1.23022 0.97287 0.95406 1.00727 1.22913 0.94193 0.85479 0.93482 0.90346 1.88029 1.80352 1.25068 1.35393 1.23359 0.83693 0.85467 0.92606 0.91874 1.22052 1.03199 0.93934 0.98348 1.21604 0.96492 0.96493 1.00538 1.22225 0.98330 0.98680 1.00027 1.22764 0.98336 0.87191 0.93320 1.87903 1.36538 1.40416 1.70551 1.21667 0.95154 0.85398 0.97392 0.94051 0.90200 0.98471 0.88535 0.91653 0.89142 0.91683 0.90241 0.89011 0.88080 0.91823 0.91895 0.88251 0.96626 0.96269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.04 10.09 21.65 0.22 -57.82 16 2 C -0.06 -3.77 5.49 84.86 0.47 -3.31 16 3 Si 0.99 47.18 29.55 68.60 2.03 49.21 16 4 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.25 -14.78 10.27 84.03 0.86 -13.92 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.63 -35.39 3.39 -691.88 -2.35 -37.73 16 10 C 0.15 8.08 5.89 86.86 0.51 8.59 16 11 C -0.13 -5.16 6.81 31.99 0.22 -4.95 16 12 C 0.10 3.86 3.23 31.80 0.10 3.97 16 13 H 0.08 2.86 7.76 -2.39 -0.02 2.84 16 14 O -0.37 -13.39 10.00 -126.21 -1.26 -14.65 16 15 C 0.24 6.88 3.09 72.01 0.22 7.10 16 16 H 0.06 1.57 8.01 -2.39 -0.02 1.55 16 17 C -0.14 -2.94 5.79 30.68 0.18 -2.76 16 18 C -0.11 -1.65 6.03 30.71 0.19 -1.46 16 19 C -0.16 -2.38 6.14 30.68 0.19 -2.19 16 20 C 0.06 1.21 6.84 72.01 0.49 1.71 16 21 O -0.43 -13.26 9.93 -126.21 -1.25 -14.51 16 22 C 0.13 6.28 6.60 86.75 0.57 6.86 16 23 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 24 H 0.08 4.67 5.88 -2.39 -0.01 4.66 16 25 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 16 26 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 27 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.02 0.80 8.06 -2.39 -0.02 0.78 16 37 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -70.49 293.99 2.40 -68.09 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.02 Total: 7.79 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 4.00 Total: -0.36 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -2.13 Total: -95.56 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -2.52 Total: -29.16 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -70.49 2.40 -68.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.245 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds