Wall clock time and date at job start Mon Mar 30 2020 03:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48496 * 109.47026 * 274.98276 * 3 2 1 5 5 H 1.48495 * 109.46947 * 34.98169 * 3 2 1 6 6 H 1.48503 * 109.47295 * 154.98523 * 3 2 1 7 7 C 1.38820 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99817 * 186.77144 * 7 2 1 9 9 N 1.36936 * 119.99958 * 7.05077 * 7 2 1 10 10 C 1.47026 * 125.64605 * 354.13039 * 9 7 2 11 11 C 1.54332 * 107.26211 * 178.85096 * 10 9 7 12 12 C 1.55157 * 103.02249 * 338.13959 * 11 10 9 13 13 H 1.09002 * 111.00133 * 277.23166 * 12 11 10 14 14 O 1.42900 * 111.03690 * 153.39844 * 12 11 10 15 15 C 1.42907 * 113.99870 * 156.33099 * 14 12 11 16 16 H 1.08993 * 109.47999 * 309.97746 * 15 14 12 17 17 C 1.53096 * 109.47843 * 189.93884 * 15 14 12 18 18 C 1.53180 * 109.15955 * 182.40746 * 17 15 14 19 19 C 1.53177 * 109.03409 * 56.98220 * 18 17 15 20 20 C 1.53087 * 109.16573 * 303.01596 * 19 18 17 21 21 O 1.42899 * 109.47779 * 69.99962 * 15 14 12 22 22 C 1.47421 * 125.64972 * 174.43890 * 9 7 2 23 23 H 0.96994 * 119.99988 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.87945 * 298.39495 * 10 9 7 25 25 H 1.08999 * 109.88181 * 59.56095 * 10 9 7 26 26 H 1.08998 * 110.84757 * 219.67179 * 11 10 9 27 27 H 1.09001 * 110.66813 * 96.52343 * 11 10 9 28 28 H 1.08997 * 109.52039 * 302.31621 * 17 15 14 29 29 H 1.08998 * 109.51927 * 62.50546 * 17 15 14 30 30 H 1.09001 * 109.54314 * 297.11660 * 18 17 15 31 31 H 1.08998 * 109.61242 * 176.89205 * 18 17 15 32 32 H 1.09008 * 109.52075 * 183.10871 * 19 18 17 33 33 H 1.09001 * 109.52368 * 62.92750 * 19 18 17 34 34 H 1.09000 * 109.48515 * 297.62775 * 20 19 18 35 35 H 1.09001 * 109.49275 * 177.59877 * 20 19 18 36 36 H 1.09008 * 110.36516 * 322.92917 * 22 9 7 37 37 H 1.08999 * 110.36786 * 85.25218 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5043 2.6199 0.8027 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0846 -1.2054 0.1108 9 7 1.3333 -2.3837 -0.1445 10 6 -0.1286 -2.5339 -0.1872 11 6 -0.4291 -4.0339 -0.3912 12 6 0.8875 -4.5731 -1.0103 13 1 0.9155 -4.3947 -2.0853 14 8 1.0599 -5.9616 -0.7197 15 6 1.9043 -6.6487 -1.6456 16 1 1.5786 -6.4336 -2.6633 17 6 1.8214 -8.1560 -1.3906 18 6 2.7741 -8.8807 -2.3464 19 6 4.1915 -8.3346 -2.1483 20 6 4.1828 -6.8205 -2.3740 21 8 3.2539 -6.2115 -1.4747 22 6 1.9496 -3.7163 -0.2773 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5640 -2.1909 0.7513 25 1 -0.5361 -1.9596 -1.0192 26 1 -1.2635 -4.1723 -1.0787 27 1 -0.6332 -4.5187 0.5634 28 1 2.1082 -8.3674 -0.3605 29 1 0.8014 -8.4991 -1.5634 30 1 2.4580 -8.7098 -3.3754 31 1 2.7622 -9.9497 -2.1340 32 1 4.8665 -8.8056 -2.8629 33 1 4.5262 -8.5497 -1.1335 34 1 3.8869 -6.6077 -3.4013 35 1 5.1802 -6.4200 -2.1927 36 1 2.8624 -3.6548 -0.8700 37 1 2.1624 -4.1356 0.7061 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259926492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:24 Heat of formation + Delta-G solvation = -75.188096 kcal Electronic energy + Delta-G solvation = -18052.408641 eV Core-core repulsion = 15216.208321 eV Total energy + Delta-G solvation = -2836.200321 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.59835 -37.70481 -35.53117 -33.72837 -32.16069 -30.33905 -29.00627 -26.98821 -24.83979 -24.18879 -23.17452 -20.66454 -20.07061 -19.88526 -17.31996 -16.85299 -16.34826 -15.66917 -14.84437 -14.62534 -14.40499 -14.23445 -13.54247 -13.27090 -12.95005 -12.73199 -12.33253 -12.15845 -11.81400 -11.62610 -11.29578 -11.18770 -10.93817 -10.87627 -10.71343 -10.36254 -10.15244 -10.04528 -9.77032 -9.64330 -9.42130 -9.23602 -8.50898 -6.74546 -5.65702 -2.97468 3.44683 3.48230 3.50556 3.52723 4.10766 4.57367 4.64592 4.68012 4.80560 4.97544 5.01983 5.28612 5.44308 5.49653 5.52401 5.59873 5.61945 5.64872 5.75520 5.84291 5.85471 5.90045 5.94936 6.12834 6.31845 6.58938 6.61298 6.83012 6.91205 7.27171 7.61806 7.64870 7.68915 7.88586 8.32987 9.28858 9.89462 10.56538 11.46799 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040851 B = 0.005499 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.259218 B = 5090.837007 C = 5656.651158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.178 3.822 11 C -0.138 4.138 12 C 0.074 3.926 13 H 0.065 0.935 14 O -0.357 6.357 15 C 0.256 3.744 16 H 0.048 0.952 17 C -0.141 4.141 18 C -0.119 4.119 19 C -0.159 4.159 20 C 0.070 3.930 21 O -0.396 6.396 22 C 0.127 3.873 23 H 0.252 0.748 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.044 0.956 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.226 -16.911 -6.107 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.334 5.334 10 C 0.053 3.947 11 C -0.176 4.176 12 C 0.016 3.984 13 H 0.083 0.917 14 O -0.275 6.275 15 C 0.160 3.840 16 H 0.066 0.934 17 C -0.178 4.178 18 C -0.157 4.157 19 C -0.197 4.197 20 C -0.007 4.007 21 O -0.317 6.317 22 C 0.001 3.999 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.124 -16.642 -5.786 18.096 hybrid contribution 0.479 0.804 -0.381 1.011 sum 4.603 -15.838 -6.168 17.609 Atomic orbital electron populations 1.69969 1.04911 1.24950 1.57214 1.24822 0.95703 0.97596 1.02392 0.86109 0.78711 0.83634 0.77439 1.21691 1.21790 1.20629 1.19091 0.91152 0.82482 1.42534 0.90400 1.44412 1.01666 1.01120 1.86237 1.21174 0.84727 0.87754 1.01035 1.23000 0.94971 0.99337 1.00309 1.23451 0.97633 0.78894 0.98419 0.91689 1.87998 1.63250 1.22870 1.53428 1.22908 0.79249 0.90245 0.91639 0.93445 1.22019 1.00714 0.93623 1.01486 1.21581 0.94629 1.00052 0.99432 1.22249 0.97378 0.96987 1.03087 1.22469 0.93501 0.91869 0.92841 1.87954 1.18079 1.66406 1.59226 1.21889 0.94585 0.86263 0.97190 0.93810 0.93859 0.93150 0.91881 0.91505 0.90146 0.90292 0.91733 0.90996 0.90825 0.90793 0.93332 0.88684 0.93731 0.95676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.85 10.36 55.49 0.58 -27.28 16 2 C -0.01 -0.27 5.48 -17.43 -0.10 -0.36 16 3 Si 0.91 22.68 29.56 -169.99 -5.02 17.65 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.22 -6.56 10.26 -15.06 -0.15 -6.72 16 8 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 9 N -0.61 -16.58 3.39 -170.07 -0.58 -17.16 16 10 C 0.18 4.56 5.39 -3.06 -0.02 4.54 16 11 C -0.14 -2.83 6.68 -24.89 -0.17 -2.99 16 12 C 0.07 1.49 3.41 -24.58 -0.08 1.41 16 13 H 0.07 1.27 7.75 -51.93 -0.40 0.87 16 14 O -0.36 -6.53 10.07 -59.04 -0.59 -7.12 16 15 C 0.26 3.81 3.12 37.21 0.12 3.92 16 16 H 0.05 0.67 7.88 -51.93 -0.41 0.26 16 17 C -0.14 -1.62 5.79 -26.59 -0.15 -1.77 16 18 C -0.12 -1.06 6.03 -26.55 -0.16 -1.22 16 19 C -0.16 -1.44 6.14 -26.59 -0.16 -1.60 16 20 C 0.07 0.79 6.84 37.20 0.25 1.04 16 21 O -0.40 -6.26 9.72 -59.04 -0.57 -6.83 16 22 C 0.13 2.98 6.40 -2.53 -0.02 2.97 16 23 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 24 H 0.04 1.21 7.64 -51.93 -0.40 0.81 16 25 H 0.05 1.39 7.26 -51.93 -0.38 1.02 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.04 1.04 7.94 -51.92 -0.41 0.63 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 294.16 15.07 4.43 4.43 Total: -1.00 -32.18 294.16 -8.60 -40.78 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -6.20 Total: -3.69 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -0.64 Total: -0.79 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.00 Total: -44.44 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.17 Total: -13.95 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.18 -8.60 -40.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.408 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds