Wall clock time and date at job start Mon Mar 30 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48496 * 109.47026 * 274.98276 * 3 2 1 5 5 H 1.48495 * 109.46947 * 34.98169 * 3 2 1 6 6 H 1.48503 * 109.47295 * 154.98523 * 3 2 1 7 7 C 1.38820 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99817 * 186.77144 * 7 2 1 9 9 N 1.36936 * 119.99958 * 7.05077 * 7 2 1 10 10 C 1.47026 * 125.64605 * 354.13039 * 9 7 2 11 11 C 1.54332 * 107.26211 * 178.85096 * 10 9 7 12 12 C 1.55157 * 103.02249 * 338.13959 * 11 10 9 13 13 H 1.09002 * 111.00133 * 277.23166 * 12 11 10 14 14 O 1.42900 * 111.03690 * 153.39844 * 12 11 10 15 15 C 1.42907 * 113.99870 * 156.33099 * 14 12 11 16 16 H 1.08993 * 109.47999 * 309.97746 * 15 14 12 17 17 C 1.53096 * 109.47843 * 189.93884 * 15 14 12 18 18 C 1.53180 * 109.15955 * 182.40746 * 17 15 14 19 19 C 1.53177 * 109.03409 * 56.98220 * 18 17 15 20 20 C 1.53087 * 109.16573 * 303.01596 * 19 18 17 21 21 O 1.42899 * 109.47779 * 69.99962 * 15 14 12 22 22 C 1.47421 * 125.64972 * 174.43890 * 9 7 2 23 23 H 0.96994 * 119.99988 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.87945 * 298.39495 * 10 9 7 25 25 H 1.08999 * 109.88181 * 59.56095 * 10 9 7 26 26 H 1.08998 * 110.84757 * 219.67179 * 11 10 9 27 27 H 1.09001 * 110.66813 * 96.52343 * 11 10 9 28 28 H 1.08997 * 109.52039 * 302.31621 * 17 15 14 29 29 H 1.08998 * 109.51927 * 62.50546 * 17 15 14 30 30 H 1.09001 * 109.54314 * 297.11660 * 18 17 15 31 31 H 1.08998 * 109.61242 * 176.89205 * 18 17 15 32 32 H 1.09008 * 109.52075 * 183.10871 * 19 18 17 33 33 H 1.09001 * 109.52368 * 62.92750 * 19 18 17 34 34 H 1.09000 * 109.48515 * 297.62775 * 20 19 18 35 35 H 1.09001 * 109.49275 * 177.59877 * 20 19 18 36 36 H 1.09008 * 110.36516 * 322.92917 * 22 9 7 37 37 H 1.08999 * 110.36786 * 85.25218 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5043 2.6199 0.8027 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0846 -1.2054 0.1108 9 7 1.3333 -2.3837 -0.1445 10 6 -0.1286 -2.5339 -0.1872 11 6 -0.4291 -4.0339 -0.3912 12 6 0.8875 -4.5731 -1.0103 13 1 0.9155 -4.3947 -2.0853 14 8 1.0599 -5.9616 -0.7197 15 6 1.9043 -6.6487 -1.6456 16 1 1.5786 -6.4336 -2.6633 17 6 1.8214 -8.1560 -1.3906 18 6 2.7741 -8.8807 -2.3464 19 6 4.1915 -8.3346 -2.1483 20 6 4.1828 -6.8205 -2.3740 21 8 3.2539 -6.2115 -1.4747 22 6 1.9496 -3.7163 -0.2773 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5640 -2.1909 0.7513 25 1 -0.5361 -1.9596 -1.0192 26 1 -1.2635 -4.1723 -1.0787 27 1 -0.6332 -4.5187 0.5634 28 1 2.1082 -8.3674 -0.3605 29 1 0.8014 -8.4991 -1.5634 30 1 2.4580 -8.7098 -3.3754 31 1 2.7622 -9.9497 -2.1340 32 1 4.8665 -8.8056 -2.8629 33 1 4.5262 -8.5497 -1.1335 34 1 3.8869 -6.6077 -3.4013 35 1 5.1802 -6.4200 -2.1927 36 1 2.8624 -3.6548 -0.8700 37 1 2.1624 -4.1356 0.7061 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259926492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:23 Heat of formation + Delta-G solvation = -95.638816 kcal Electronic energy + Delta-G solvation = -18053.295451 eV Core-core repulsion = 15216.208321 eV Total energy + Delta-G solvation = -2837.087130 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.74090 -39.27991 -37.16001 -34.62441 -34.20301 -31.56349 -30.79819 -28.83260 -26.50310 -25.51563 -24.19226 -22.14328 -21.95512 -21.08685 -18.95620 -18.61502 -17.43680 -16.94755 -16.62306 -16.12738 -15.70807 -15.48698 -15.00148 -14.72371 -14.31375 -14.03832 -13.78714 -13.67206 -13.52485 -13.17053 -12.89998 -12.71248 -12.23097 -12.04365 -12.02969 -12.01546 -11.89846 -11.80691 -11.47261 -11.39306 -10.79878 -10.70390 -10.41618 -8.93736 -7.88123 -5.23981 1.45485 1.48045 1.57360 2.27186 2.50491 3.01013 3.30739 3.71308 3.79423 3.82938 3.90455 3.98994 4.02327 4.09670 4.12357 4.15469 4.45515 4.58165 4.65348 4.78649 4.81041 4.88144 4.93537 4.98669 5.03206 5.07583 5.11579 5.17031 5.37120 5.41593 5.59743 5.69739 6.06666 6.18308 6.39347 7.07263 7.72717 8.38600 9.23112 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040851 B = 0.005499 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.259218 B = 5090.837007 C = 5656.651158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.062 4.062 3 Si 0.982 3.018 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.249 4.249 8 H 0.079 0.921 9 N -0.627 5.627 10 C 0.185 3.815 11 C -0.124 4.124 12 C 0.093 3.907 13 H 0.073 0.927 14 O -0.366 6.366 15 C 0.244 3.756 16 H 0.059 0.941 17 C -0.136 4.136 18 C -0.115 4.115 19 C -0.154 4.154 20 C 0.059 3.941 21 O -0.430 6.430 22 C 0.129 3.871 23 H 0.250 0.750 24 H 0.010 0.990 25 H 0.024 0.976 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.040 0.960 37 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 -18.372 -7.297 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.255 4.255 3 Si 0.810 3.190 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.355 5.355 10 C 0.060 3.940 11 C -0.162 4.162 12 C 0.035 3.965 13 H 0.091 0.909 14 O -0.285 6.285 15 C 0.149 3.851 16 H 0.077 0.923 17 C -0.174 4.174 18 C -0.152 4.152 19 C -0.192 4.192 20 C -0.017 4.017 21 O -0.352 6.352 22 C 0.003 3.997 23 H 0.059 0.941 24 H 0.028 0.972 25 H 0.043 0.957 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.058 0.942 37 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 4.846 -18.143 -6.985 20.036 hybrid contribution 0.323 1.214 -0.004 1.256 sum 5.169 -16.930 -6.989 19.031 Atomic orbital electron populations 1.70178 1.06344 1.25555 1.57714 1.25706 0.96678 1.01030 1.02074 0.85012 0.77742 0.78798 0.77483 1.21019 1.21757 1.19399 1.19452 0.91565 0.83792 1.43005 0.90355 1.44720 1.02597 1.02009 1.86157 1.20956 0.83826 0.91015 0.98228 1.22835 0.96328 0.95430 1.01613 1.23076 0.95552 0.79796 0.98111 0.90868 1.87978 1.64357 1.21347 1.54823 1.23317 0.78714 0.91633 0.91421 0.92341 1.22044 1.02308 0.91348 1.01668 1.21611 0.93530 1.00777 0.99301 1.22222 0.98247 0.95283 1.03431 1.22761 0.92796 0.93447 0.92647 1.87894 1.18829 1.67761 1.60765 1.21927 0.95532 0.85367 0.96871 0.94118 0.97194 0.95735 0.88812 0.90865 0.91335 0.89106 0.90480 0.88892 0.88177 0.91590 0.92238 0.88238 0.94153 0.96989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.62 10.36 21.65 0.22 -58.40 16 2 C -0.06 -3.64 5.48 84.86 0.47 -3.18 16 3 Si 0.98 47.01 29.56 68.60 2.03 49.04 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.25 -14.88 10.26 84.04 0.86 -14.02 16 8 H 0.08 4.52 7.84 -2.91 -0.02 4.50 16 9 N -0.63 -35.09 3.39 -691.97 -2.35 -37.43 16 10 C 0.18 9.71 5.39 86.73 0.47 10.17 16 11 C -0.12 -5.00 6.68 31.79 0.21 -4.79 16 12 C 0.09 3.68 3.41 31.98 0.11 3.79 16 13 H 0.07 2.78 7.75 -2.39 -0.02 2.76 16 14 O -0.37 -12.96 10.07 -126.21 -1.27 -14.23 16 15 C 0.24 6.89 3.12 72.01 0.22 7.12 16 16 H 0.06 1.51 7.88 -2.39 -0.02 1.49 16 17 C -0.14 -2.83 5.79 30.69 0.18 -2.65 16 18 C -0.11 -1.65 6.03 30.71 0.19 -1.47 16 19 C -0.15 -2.36 6.14 30.68 0.19 -2.17 16 20 C 0.06 1.23 6.84 72.01 0.49 1.73 16 21 O -0.43 -13.25 9.72 -126.21 -1.23 -14.48 16 22 C 0.13 6.12 6.40 86.85 0.56 6.68 16 23 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 24 H 0.01 0.57 7.64 -2.39 -0.02 0.55 16 25 H 0.02 1.39 7.26 -2.39 -0.02 1.38 16 26 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 27 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.92 7.94 -2.38 -0.02 1.90 16 37 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -70.45 294.16 2.37 -68.08 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.02 Total: 6.22 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 3.94 Total: 1.21 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -2.12 Total: -95.83 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -2.50 Total: -28.71 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -70.45 2.37 -68.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.559 kcal (2) G-P(sol) polarization free energy of solvation -70.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds