Wall clock time and date at job start Mon Mar 30 2020 04:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47271 * 2 1 4 4 C 1.53006 * 109.46941 * 120.00557 * 2 1 3 5 5 H 1.09004 * 109.46797 * 182.09156 * 4 2 1 6 6 C 1.50702 * 109.46622 * 302.08657 * 4 2 1 7 7 H 1.08003 * 120.00095 * 54.92328 * 6 4 2 8 8 C 1.37872 * 119.99928 * 234.91793 * 6 4 2 9 9 N 1.31516 * 120.00259 * 184.44120 * 8 6 4 10 10 Si 1.86801 * 120.00224 * 4.44430 * 8 6 4 11 11 H 1.48499 * 109.47094 * 84.57379 * 10 8 6 12 12 H 1.48498 * 109.47283 * 204.57360 * 10 8 6 13 13 H 1.48503 * 109.46980 * 324.57687 * 10 8 6 14 14 N 1.46494 * 109.47359 * 62.08814 * 4 2 1 15 15 C 1.34777 * 120.00153 * 85.00269 * 14 4 2 16 16 O 1.21282 * 119.99831 * 359.97438 * 15 14 4 17 17 C 1.50697 * 120.00232 * 179.97438 * 15 14 4 18 18 H 1.08991 * 110.90898 * 297.87007 * 17 15 14 19 19 C 1.55304 * 110.84714 * 174.28225 * 17 15 14 20 20 C 1.54944 * 100.94315 * 207.67656 * 19 17 15 21 21 O 1.43646 * 105.13506 * 36.44632 * 20 19 17 22 22 C 1.43238 * 109.97179 * 335.57338 * 21 20 19 23 23 H 1.09000 * 109.47427 * 299.99897 * 1 2 3 24 24 H 1.08998 * 109.47004 * 60.00153 * 1 2 3 25 25 H 1.09000 * 109.47401 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46931 * 240.00283 * 2 1 3 27 27 H 1.08994 * 109.47517 * 304.81463 * 3 2 1 28 28 H 1.09005 * 109.46777 * 64.81237 * 3 2 1 29 29 H 1.08997 * 109.47507 * 184.80754 * 3 2 1 30 30 H 0.96996 * 120.00267 * 180.02562 * 9 8 6 31 31 H 0.97004 * 120.00474 * 265.00238 * 14 4 2 32 32 H 1.08995 * 111.12799 * 325.59633 * 19 17 15 33 33 H 1.08999 * 111.12305 * 89.76029 * 19 17 15 34 34 H 1.08997 * 110.31289 * 277.53216 * 20 19 17 35 35 H 1.09003 * 110.31284 * 155.36213 * 20 19 17 36 36 H 1.09002 * 109.83147 * 121.22612 * 22 21 20 37 37 H 1.08998 * 109.82625 * 242.11012 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1294 -0.6890 1.2682 6 6 1.4957 -0.0415 2.4791 7 1 0.4307 0.0964 2.5933 8 6 2.3575 0.4043 3.4587 9 7 1.8795 0.9185 4.5708 10 14 4.2041 0.2783 3.2062 11 1 4.6802 1.4565 2.4380 12 1 4.8828 0.2410 4.5265 13 1 4.5171 -0.9629 2.4533 14 7 1.5932 -2.1163 1.2242 15 6 2.3095 -3.0415 0.5553 16 8 3.3237 -2.7191 -0.0263 17 6 1.8502 -4.4766 0.5301 18 1 1.8351 -4.8979 1.5352 19 6 2.7451 -5.3268 -0.4123 20 6 1.7497 -6.4326 -0.8447 21 8 0.4803 -5.7703 -0.9603 22 6 0.4635 -4.5979 -0.1375 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6080 1.9806 -0.8436 28 1 1.7487 1.9307 0.9300 29 1 3.1266 1.4437 -0.0861 30 1 2.4858 1.2325 5.2598 31 1 0.7818 -2.3742 1.6891 32 1 3.0796 -4.7424 -1.2694 33 1 3.5925 -5.7501 0.1270 34 1 1.7006 -7.2148 -0.0872 35 1 2.0457 -6.8536 -1.8056 36 1 0.2702 -3.7181 -0.7512 37 1 -0.3088 -4.6931 0.6258 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259955247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:14 Heat of formation + Delta-G solvation = -102.754053 kcal Electronic energy + Delta-G solvation = -18322.934011 eV Core-core repulsion = 15485.538340 eV Total energy + Delta-G solvation = -2837.395670 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.96529 -38.24243 -36.01775 -32.64846 -32.35701 -31.88902 -29.37537 -27.15082 -26.29410 -23.61307 -22.64434 -21.90825 -19.79601 -18.56491 -17.70590 -16.76588 -16.34687 -15.47142 -15.10960 -14.68307 -14.29584 -13.85709 -13.72497 -13.25357 -13.22799 -12.85643 -12.49237 -12.05979 -11.68513 -11.44043 -11.39581 -11.23493 -11.03213 -10.92550 -10.88578 -10.50498 -10.24302 -10.01550 -9.77421 -9.61744 -9.18030 -8.97487 -8.72714 -7.95796 -6.30356 -4.35723 3.21716 3.23304 3.29961 3.39346 3.76093 4.04356 4.27554 4.43447 4.94766 4.97539 5.16338 5.17841 5.25265 5.51887 5.69724 5.72288 5.81735 5.88522 5.93521 5.96197 6.02149 6.20663 6.42228 6.59572 6.62160 6.72098 6.87685 6.91284 7.02099 7.12732 7.22763 7.41332 7.61854 8.10544 8.59053 8.75998 8.99547 9.33062 10.79902 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.007609 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.425798 B = 3678.970009 C = 4020.567793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 C -0.136 4.136 4 C 0.227 3.773 5 H 0.057 0.943 6 C -0.519 4.519 7 H 0.084 0.916 8 C 0.086 3.914 9 N -0.883 5.883 10 Si 0.867 3.133 11 H -0.270 1.270 12 H -0.288 1.288 13 H -0.258 1.258 14 N -0.702 5.702 15 C 0.508 3.492 16 O -0.558 6.558 17 C -0.151 4.151 18 H 0.106 0.894 19 C -0.135 4.135 20 C 0.050 3.950 21 O -0.385 6.385 22 C 0.064 3.936 23 H 0.067 0.933 24 H 0.032 0.968 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.268 0.732 31 H 0.391 0.609 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.372 -9.431 -7.154 11.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.113 4.113 3 C -0.193 4.193 4 C 0.126 3.874 5 H 0.075 0.925 6 C -0.556 4.556 7 H 0.102 0.898 8 C -0.120 4.120 9 N -0.519 5.519 10 Si 0.694 3.306 11 H -0.195 1.195 12 H -0.214 1.214 13 H -0.183 1.183 14 N -0.350 5.350 15 C 0.292 3.708 16 O -0.438 6.438 17 C -0.173 4.173 18 H 0.124 0.876 19 C -0.173 4.173 20 C -0.026 4.026 21 O -0.304 6.304 22 C -0.013 4.013 23 H 0.086 0.914 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.225 0.775 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.784 -9.136 -7.486 11.837 hybrid contribution 0.817 -0.089 0.500 0.962 sum 0.033 -9.225 -6.985 11.572 Atomic orbital electron populations 1.21719 0.96117 1.00266 1.00913 1.21340 0.95585 0.96223 0.98161 1.21711 0.99511 0.96374 1.01743 1.19330 0.96546 0.77405 0.94122 0.92499 1.21025 0.95938 1.37238 1.01447 0.89835 1.25084 0.98730 0.93889 0.94301 1.69890 1.35676 1.39908 1.06395 0.86995 0.85914 0.80060 0.77607 1.19549 1.21433 1.18319 1.47305 1.27089 1.10211 1.50380 1.20173 0.84489 0.86497 0.79621 1.90632 1.25659 1.81730 1.45745 1.22980 0.96584 0.95832 1.01881 0.87558 1.23123 0.97919 0.96067 1.00146 1.23417 0.82836 0.94973 1.01384 1.88379 1.34821 1.39578 1.67644 1.23065 0.95395 0.88799 0.93999 0.91368 0.94866 0.94146 0.93810 0.94425 0.90716 0.94231 0.92212 0.77509 0.89058 0.89709 0.92196 0.89698 0.90707 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.76 37.16 0.33 -2.09 16 2 C -0.09 -1.91 2.89 -90.62 -0.26 -2.17 16 3 C -0.14 -2.70 9.06 37.15 0.34 -2.36 16 4 C 0.23 5.13 1.75 -69.08 -0.12 5.01 16 5 H 0.06 1.44 3.96 -51.93 -0.21 1.24 16 6 C -0.52 -13.02 7.15 -34.44 -0.25 -13.26 16 7 H 0.08 2.22 6.75 -52.48 -0.35 1.87 16 8 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 9 N -0.88 -24.95 13.96 55.43 0.77 -24.18 16 10 Si 0.87 21.16 27.23 -169.99 -4.63 16.53 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.26 -6.52 6.41 56.52 0.36 -6.15 16 14 N -0.70 -13.80 4.34 -54.93 -0.24 -14.04 16 15 C 0.51 9.71 6.99 -10.99 -0.08 9.64 16 16 O -0.56 -12.74 15.43 5.56 0.09 -12.65 16 17 C -0.15 -2.18 3.39 -89.83 -0.30 -2.48 16 18 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 19 C -0.13 -1.77 6.23 -24.48 -0.15 -1.93 16 20 C 0.05 0.57 7.78 38.18 0.30 0.87 16 21 O -0.38 -5.38 11.36 -35.23 -0.40 -5.78 16 22 C 0.06 0.86 7.34 37.88 0.28 1.14 16 23 H 0.07 1.33 6.46 -51.93 -0.34 0.99 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.68 7.67 -51.93 -0.40 0.28 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.61 7.13 -51.93 -0.37 1.24 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.39 6.87 8.59 -40.82 -0.35 6.52 16 32 H 0.09 1.36 7.47 -51.93 -0.39 0.98 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.06 7.81 -51.93 -0.41 0.66 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 297.13 15.07 4.48 4.48 Total: -1.00 -29.81 297.13 -5.74 -35.55 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.79 Total: 5.53 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -0.02 Total: -5.44 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.54 Total: -38.22 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.31 Total: -18.43 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.63 Total: 16.53 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.81 -5.74 -35.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.206 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds