Wall clock time and date at job start Mon Mar 30 2020 04:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47271 * 2 1 4 4 C 1.53006 * 109.46941 * 120.00557 * 2 1 3 5 5 H 1.09004 * 109.46797 * 182.09156 * 4 2 1 6 6 C 1.50702 * 109.46622 * 302.08657 * 4 2 1 7 7 H 1.08003 * 120.00095 * 54.92328 * 6 4 2 8 8 C 1.37872 * 119.99928 * 234.91793 * 6 4 2 9 9 N 1.31516 * 120.00259 * 184.44120 * 8 6 4 10 10 Si 1.86801 * 120.00224 * 4.44430 * 8 6 4 11 11 H 1.48499 * 109.47094 * 84.57379 * 10 8 6 12 12 H 1.48498 * 109.47283 * 204.57360 * 10 8 6 13 13 H 1.48503 * 109.46980 * 324.57687 * 10 8 6 14 14 N 1.46494 * 109.47359 * 62.08814 * 4 2 1 15 15 C 1.34777 * 120.00153 * 85.00269 * 14 4 2 16 16 O 1.21282 * 119.99831 * 359.97438 * 15 14 4 17 17 C 1.50697 * 120.00232 * 179.97438 * 15 14 4 18 18 H 1.08991 * 110.90898 * 297.87007 * 17 15 14 19 19 C 1.55304 * 110.84714 * 174.28225 * 17 15 14 20 20 C 1.54944 * 100.94315 * 207.67656 * 19 17 15 21 21 O 1.43646 * 105.13506 * 36.44632 * 20 19 17 22 22 C 1.43238 * 109.97179 * 335.57338 * 21 20 19 23 23 H 1.09000 * 109.47427 * 299.99897 * 1 2 3 24 24 H 1.08998 * 109.47004 * 60.00153 * 1 2 3 25 25 H 1.09000 * 109.47401 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46931 * 240.00283 * 2 1 3 27 27 H 1.08994 * 109.47517 * 304.81463 * 3 2 1 28 28 H 1.09005 * 109.46777 * 64.81237 * 3 2 1 29 29 H 1.08997 * 109.47507 * 184.80754 * 3 2 1 30 30 H 0.96996 * 120.00267 * 180.02562 * 9 8 6 31 31 H 0.97004 * 120.00474 * 265.00238 * 14 4 2 32 32 H 1.08995 * 111.12799 * 325.59633 * 19 17 15 33 33 H 1.08999 * 111.12305 * 89.76029 * 19 17 15 34 34 H 1.08997 * 110.31289 * 277.53216 * 20 19 17 35 35 H 1.09003 * 110.31284 * 155.36213 * 20 19 17 36 36 H 1.09002 * 109.83147 * 121.22612 * 22 21 20 37 37 H 1.08998 * 109.82625 * 242.11012 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1294 -0.6890 1.2682 6 6 1.4957 -0.0415 2.4791 7 1 0.4307 0.0964 2.5933 8 6 2.3575 0.4043 3.4587 9 7 1.8795 0.9185 4.5708 10 14 4.2041 0.2783 3.2062 11 1 4.6802 1.4565 2.4380 12 1 4.8828 0.2410 4.5265 13 1 4.5171 -0.9629 2.4533 14 7 1.5932 -2.1163 1.2242 15 6 2.3095 -3.0415 0.5553 16 8 3.3237 -2.7191 -0.0263 17 6 1.8502 -4.4766 0.5301 18 1 1.8351 -4.8979 1.5352 19 6 2.7451 -5.3268 -0.4123 20 6 1.7497 -6.4326 -0.8447 21 8 0.4803 -5.7703 -0.9603 22 6 0.4635 -4.5979 -0.1375 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6080 1.9806 -0.8436 28 1 1.7487 1.9307 0.9300 29 1 3.1266 1.4437 -0.0861 30 1 2.4858 1.2325 5.2598 31 1 0.7818 -2.3742 1.6891 32 1 3.0796 -4.7424 -1.2694 33 1 3.5925 -5.7501 0.1270 34 1 1.7006 -7.2148 -0.0872 35 1 2.0457 -6.8536 -1.8056 36 1 0.2702 -3.7181 -0.7512 37 1 -0.3088 -4.6931 0.6258 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259955247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:13 Heat of formation + Delta-G solvation = -123.383970 kcal Electronic energy + Delta-G solvation = -18323.828591 eV Core-core repulsion = 15485.538340 eV Total energy + Delta-G solvation = -2838.290251 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.29736 -39.58090 -37.70620 -34.38653 -34.19402 -33.09737 -30.47790 -28.92959 -27.85376 -25.22915 -23.95407 -23.06597 -21.32383 -20.27021 -19.37317 -18.13407 -17.64342 -17.06636 -16.55151 -15.98350 -15.85641 -15.43783 -15.32906 -14.80745 -14.61310 -14.30485 -14.15497 -13.42890 -13.29140 -13.05694 -12.88591 -12.69612 -12.45456 -12.31900 -12.18674 -11.95090 -11.91452 -11.81318 -11.55850 -11.03070 -10.78513 -10.74976 -10.44968 -9.65326 -8.37919 -6.42741 1.25121 1.30614 1.40625 1.72611 2.25452 2.36921 2.88078 3.17449 3.33750 3.85781 3.93448 4.14263 4.19634 4.28519 4.32118 4.37096 4.41166 4.70974 4.78882 4.81790 4.88300 4.93351 4.95620 4.98974 5.14614 5.15726 5.20736 5.37841 5.40307 5.54342 5.69991 5.90018 5.94506 6.15156 6.68638 6.93397 7.26293 7.46403 8.75755 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.007609 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.425798 B = 3678.970009 C = 4020.567793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 C -0.134 4.134 4 C 0.230 3.770 5 H 0.031 0.969 6 C -0.501 4.501 7 H 0.067 0.933 8 C 0.045 3.955 9 N -0.923 5.923 10 Si 0.913 3.087 11 H -0.265 1.265 12 H -0.285 1.285 13 H -0.273 1.273 14 N -0.701 5.701 15 C 0.506 3.494 16 O -0.597 6.597 17 C -0.145 4.145 18 H 0.131 0.869 19 C -0.135 4.135 20 C 0.053 3.947 21 O -0.400 6.400 22 C 0.069 3.931 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.269 0.731 31 H 0.403 0.597 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 -10.959 -8.055 13.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.113 4.113 3 C -0.191 4.191 4 C 0.128 3.872 5 H 0.049 0.951 6 C -0.539 4.539 7 H 0.085 0.915 8 C -0.157 4.157 9 N -0.561 5.561 10 Si 0.740 3.260 11 H -0.190 1.190 12 H -0.211 1.211 13 H -0.198 1.198 14 N -0.350 5.350 15 C 0.292 3.708 16 O -0.480 6.480 17 C -0.166 4.166 18 H 0.148 0.852 19 C -0.173 4.173 20 C -0.022 4.022 21 O -0.320 6.320 22 C -0.008 4.008 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.239 0.761 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.330 -10.681 -8.390 13.647 hybrid contribution 0.963 0.342 0.696 1.236 sum -0.367 -10.338 -7.694 12.893 Atomic orbital electron populations 1.21628 0.94133 1.01189 1.01249 1.21320 0.97253 0.96122 0.96642 1.21684 0.99299 0.96228 1.01929 1.19125 0.94974 0.78960 0.94174 0.95141 1.21094 0.94983 1.36149 1.01689 0.91481 1.25564 1.01285 0.94391 0.94438 1.69965 1.36560 1.42196 1.07390 0.86284 0.83125 0.79355 0.77246 1.19032 1.21095 1.19824 1.46942 1.27688 1.09402 1.50934 1.20879 0.83493 0.88154 0.78227 1.90615 1.27392 1.82759 1.47197 1.22981 0.97623 0.92259 1.03741 0.85156 1.23136 0.98740 0.96304 0.99160 1.23573 0.81086 0.94466 1.03115 1.88366 1.35994 1.39682 1.67961 1.23051 0.95066 0.88495 0.94187 0.92949 0.92533 0.92986 0.94114 0.91460 0.92748 0.94885 0.92197 0.76104 0.91350 0.88449 0.89789 0.88108 0.91958 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.31 8.76 71.98 0.63 -3.68 16 2 C -0.09 -3.73 2.89 -10.79 -0.03 -3.77 16 3 C -0.13 -5.19 9.06 71.98 0.65 -4.54 16 4 C 0.23 10.36 1.75 44.25 0.08 10.44 16 5 H 0.03 1.56 3.96 -2.38 -0.01 1.55 16 6 C -0.50 -25.25 7.15 25.60 0.18 -25.07 16 7 H 0.07 3.59 6.75 -2.91 -0.02 3.57 16 8 C 0.04 2.41 5.47 84.65 0.46 2.88 16 9 N -0.92 -52.82 13.96 21.45 0.30 -52.52 16 10 Si 0.91 44.23 27.23 68.60 1.87 46.10 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.27 -13.75 6.41 99.48 0.64 -13.11 16 14 N -0.70 -26.91 4.34 -446.09 -1.94 -28.85 16 15 C 0.51 18.80 6.99 87.66 0.61 19.42 16 16 O -0.60 -27.18 15.43 -3.04 -0.05 -27.23 16 17 C -0.14 -3.83 3.39 -10.28 -0.03 -3.87 16 18 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 19 C -0.14 -3.28 6.23 32.05 0.20 -3.08 16 20 C 0.05 1.04 7.78 72.65 0.56 1.61 16 21 O -0.40 -10.01 11.36 -148.98 -1.69 -11.70 16 22 C 0.07 1.66 7.34 72.45 0.53 2.19 16 23 H 0.05 1.98 6.46 -2.39 -0.02 1.96 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 1.65 7.67 -2.39 -0.02 1.63 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 2.32 7.13 -2.38 -0.02 2.30 16 29 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 31 H 0.40 13.58 8.59 -92.71 -0.80 12.78 16 32 H 0.07 1.98 7.47 -2.39 -0.02 1.96 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.65 7.81 -2.39 -0.02 1.63 16 37 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -64.20 297.13 2.53 -61.67 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.19 Total: 20.02 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 3.85 Total: -7.49 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -1.64 Total: -81.37 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.74 Total: -38.93 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.87 Total: 46.10 kcal Total: -64.20 2.53 -61.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.714 kcal (2) G-P(sol) polarization free energy of solvation -64.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds