Wall clock time and date at job start Mon Mar 30 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47135 * 2 1 4 4 C 1.52999 * 109.46902 * 120.00332 * 2 1 3 5 5 H 1.09004 * 109.47420 * 60.13138 * 4 2 1 6 6 C 1.50700 * 109.47149 * 300.12359 * 4 2 1 7 7 H 1.07990 * 120.00099 * 324.82293 * 6 4 2 8 8 C 1.37875 * 119.99489 * 144.82116 * 6 4 2 9 9 N 1.31523 * 119.99736 * 184.80734 * 8 6 4 10 10 Si 1.86802 * 120.00738 * 4.80612 * 8 6 4 11 11 H 1.48497 * 109.47039 * 270.95388 * 10 8 6 12 12 H 1.48489 * 109.47390 * 150.94913 * 10 8 6 13 13 H 1.48507 * 109.46370 * 30.94977 * 10 8 6 14 14 N 1.46508 * 109.46882 * 180.12375 * 4 2 1 15 15 C 1.34775 * 120.00181 * 275.00319 * 14 4 2 16 16 O 1.21283 * 120.00176 * 359.97438 * 15 14 4 17 17 C 1.50700 * 119.99683 * 180.02562 * 15 14 4 18 18 H 1.08997 * 110.46015 * 57.39490 * 17 15 14 19 19 C 1.54517 * 110.50865 * 179.97438 * 17 15 14 20 20 C 1.54476 * 104.06158 * 118.64183 * 19 17 15 21 21 O 1.44425 * 104.80547 * 23.97677 * 20 19 17 22 22 C 1.44428 * 105.27650 * 319.48747 * 21 20 19 23 23 H 1.09008 * 109.47369 * 186.58315 * 1 2 3 24 24 H 1.09000 * 109.47123 * 306.58071 * 1 2 3 25 25 H 1.08997 * 109.47497 * 66.58467 * 1 2 3 26 26 H 1.09002 * 109.46882 * 240.00286 * 2 1 3 27 27 H 1.08996 * 109.47072 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47409 * 300.00421 * 3 2 1 29 29 H 1.09002 * 109.47002 * 60.00359 * 3 2 1 30 30 H 0.97003 * 119.99699 * 179.97438 * 9 8 6 31 31 H 0.97003 * 119.99256 * 94.99978 * 14 4 2 32 32 H 1.08999 * 110.50955 * 237.28868 * 19 17 15 33 33 H 1.08995 * 110.50852 * 359.97438 * 19 17 15 34 34 H 1.09005 * 110.37178 * 142.81101 * 20 19 17 35 35 H 1.09000 * 110.37369 * 265.03641 * 20 19 17 36 36 H 1.08997 * 110.36960 * 281.68017 * 22 21 20 37 37 H 1.08995 * 110.37303 * 159.33833 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6785 -1.7497 1.2480 6 6 1.5351 -0.0128 2.4797 7 1 1.4328 1.0623 2.4800 8 6 1.2038 -0.7372 3.6051 9 7 0.6746 -0.1307 4.6453 10 14 1.5065 -2.5799 3.6526 11 1 0.3153 -3.2909 3.1228 12 1 1.7541 -3.0049 5.0536 13 1 2.6906 -2.9085 2.8188 14 7 3.5050 -0.7187 1.2507 15 6 4.1813 -1.6731 0.5811 16 8 3.5771 -2.5343 -0.0223 17 6 5.6883 -1.6706 0.5832 18 1 6.0680 -1.7138 1.6040 19 6 6.2327 -2.8548 -0.2469 20 6 7.0374 -2.1803 -1.3799 21 8 7.3987 -0.8842 -0.8550 22 6 6.2285 -0.4209 -0.1466 23 1 -0.3634 -1.0209 0.1178 24 1 -0.3633 0.6124 0.8252 25 1 -0.3634 0.4084 -0.9430 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4424 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 0.4412 -0.6404 5.4369 31 1 3.9882 -0.0301 1.7336 32 1 6.8834 -3.4815 0.3630 33 1 5.4118 -3.4421 -0.6583 34 1 7.9318 -2.7604 -1.6074 35 1 6.4197 -2.0716 -2.2713 36 1 5.4861 -0.0407 -0.8483 37 1 6.5015 0.3506 0.5734 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259955252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:15 Heat of formation + Delta-G solvation = -103.424566 kcal Electronic energy + Delta-G solvation = -18411.970306 eV Core-core repulsion = 15574.545560 eV Total energy + Delta-G solvation = -2837.424746 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.97087 -38.17612 -36.00876 -32.59556 -32.39211 -31.81056 -29.23637 -27.12221 -26.30019 -23.60653 -22.87938 -21.79427 -19.58296 -18.59125 -17.68841 -16.68213 -16.34255 -15.30631 -15.11094 -14.80578 -14.43159 -13.98692 -13.71126 -13.33180 -12.85908 -12.75086 -12.43392 -11.99852 -11.67372 -11.39712 -11.30816 -11.23211 -11.03411 -10.97712 -10.67941 -10.50365 -10.22849 -9.98250 -9.85000 -9.80818 -9.22533 -8.99211 -8.75505 -7.96146 -6.31368 -4.37886 3.21056 3.26094 3.32076 3.42508 3.84234 4.16092 4.28058 4.59873 4.90962 5.02034 5.14940 5.26208 5.34527 5.58504 5.72294 5.75668 5.83539 5.87585 5.91476 5.98914 6.04500 6.17765 6.37492 6.59355 6.61161 6.69313 6.75318 6.85172 6.97938 7.10657 7.19142 7.41694 7.65111 8.12204 8.61459 8.77077 9.03668 9.32156 10.78388 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024544 B = 0.008393 C = 0.007279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.541176 B = 3335.324305 C = 3845.867733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 C -0.134 4.134 4 C 0.233 3.767 5 H 0.050 0.950 6 C -0.520 4.520 7 H 0.085 0.915 8 C 0.086 3.914 9 N -0.881 5.881 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.258 1.258 14 N -0.704 5.704 15 C 0.504 3.496 16 O -0.560 6.560 17 C -0.151 4.151 18 H 0.103 0.897 19 C -0.146 4.146 20 C 0.046 3.954 21 O -0.377 6.377 22 C 0.060 3.940 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.033 0.967 29 H 0.066 0.934 30 H 0.268 0.732 31 H 0.391 0.609 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.839 -1.064 -7.827 11.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.110 4.110 3 C -0.191 4.191 4 C 0.133 3.867 5 H 0.068 0.932 6 C -0.558 4.558 7 H 0.103 0.897 8 C -0.120 4.120 9 N -0.517 5.517 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.182 1.182 14 N -0.352 5.352 15 C 0.289 3.711 16 O -0.440 6.440 17 C -0.173 4.173 18 H 0.121 0.879 19 C -0.184 4.184 20 C -0.031 4.031 21 O -0.296 6.296 22 C -0.017 4.017 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.225 0.775 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.498 -1.562 -8.071 11.824 hybrid contribution 0.172 -0.840 0.582 1.036 sum 8.670 -2.402 -7.489 11.706 Atomic orbital electron populations 1.21637 0.95350 1.01449 1.00248 1.21254 0.95775 0.95982 0.98007 1.21738 0.99756 0.96788 1.00859 1.19220 0.76334 0.96911 0.94231 0.93197 1.21117 1.43176 0.96031 0.95453 0.89685 1.25122 0.93205 0.98433 0.95281 1.69905 1.40059 1.36720 1.04974 0.86908 0.80262 0.85801 0.77168 1.20082 1.21531 1.18249 1.47638 1.09852 1.28238 1.49486 1.20314 0.88615 0.82593 0.79600 1.90587 1.70034 1.38245 1.45172 1.22776 0.95086 0.97162 1.02268 0.87904 1.22929 1.00824 0.97730 0.96942 1.23430 0.99206 0.84108 0.96329 1.89087 1.35242 1.33807 1.71458 1.23332 0.87792 0.95407 0.95185 0.93706 0.91263 0.94785 0.93610 0.93989 0.94789 0.91513 0.92233 0.77538 0.90728 0.88081 0.89219 0.92191 0.91701 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.82 37.16 0.33 -2.16 16 2 C -0.09 -1.81 2.90 -90.62 -0.26 -2.07 16 3 C -0.13 -2.38 8.79 37.15 0.33 -2.05 16 4 C 0.23 5.21 1.29 -69.08 -0.09 5.12 16 5 H 0.05 1.25 5.11 -51.93 -0.27 0.99 16 6 C -0.52 -12.97 7.55 -34.44 -0.26 -13.23 16 7 H 0.09 2.25 6.34 -52.49 -0.33 1.92 16 8 C 0.09 2.28 5.47 -17.82 -0.10 2.18 16 9 N -0.88 -24.86 13.96 55.43 0.77 -24.09 16 10 Si 0.87 21.22 26.91 -169.99 -4.57 16.64 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.26 -6.37 7.00 56.52 0.40 -5.98 16 14 N -0.70 -13.83 4.29 -54.93 -0.24 -14.07 16 15 C 0.50 9.70 6.98 -10.99 -0.08 9.63 16 16 O -0.56 -12.68 14.94 5.56 0.08 -12.60 16 17 C -0.15 -2.26 3.51 -90.20 -0.32 -2.58 16 18 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 19 C -0.15 -2.02 6.67 -25.16 -0.17 -2.19 16 20 C 0.05 0.57 7.63 37.93 0.29 0.86 16 21 O -0.38 -5.32 11.65 -35.23 -0.41 -5.73 16 22 C 0.06 0.81 7.17 37.94 0.27 1.08 16 23 H 0.04 0.88 8.14 -51.92 -0.42 0.45 16 24 H 0.07 1.42 7.46 -51.93 -0.39 1.03 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.69 7.60 -51.93 -0.39 0.30 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.26 6.31 -51.93 -0.33 0.94 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.39 6.91 8.59 -40.82 -0.35 6.56 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.58 6.50 -51.93 -0.34 1.25 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.90 7.86 -51.93 -0.41 0.49 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 297.10 15.07 4.48 4.48 Total: -1.00 -29.53 297.10 -5.69 -35.22 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.75 Total: 5.56 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.06 Total: -5.41 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.54 Total: -38.16 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.33 Total: -18.33 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.57 Total: 16.64 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.53 -5.69 -35.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.207 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds