Wall clock time and date at job start Mon Mar 30 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47135 * 2 1 4 4 C 1.52999 * 109.46902 * 120.00332 * 2 1 3 5 5 H 1.09004 * 109.47420 * 60.13138 * 4 2 1 6 6 C 1.50700 * 109.47149 * 300.12359 * 4 2 1 7 7 H 1.07990 * 120.00099 * 324.82293 * 6 4 2 8 8 C 1.37875 * 119.99489 * 144.82116 * 6 4 2 9 9 N 1.31523 * 119.99736 * 184.80734 * 8 6 4 10 10 Si 1.86802 * 120.00738 * 4.80612 * 8 6 4 11 11 H 1.48497 * 109.47039 * 270.95388 * 10 8 6 12 12 H 1.48489 * 109.47390 * 150.94913 * 10 8 6 13 13 H 1.48507 * 109.46370 * 30.94977 * 10 8 6 14 14 N 1.46508 * 109.46882 * 180.12375 * 4 2 1 15 15 C 1.34775 * 120.00181 * 275.00319 * 14 4 2 16 16 O 1.21283 * 120.00176 * 359.97438 * 15 14 4 17 17 C 1.50700 * 119.99683 * 180.02562 * 15 14 4 18 18 H 1.08997 * 110.46015 * 57.39490 * 17 15 14 19 19 C 1.54517 * 110.50865 * 179.97438 * 17 15 14 20 20 C 1.54476 * 104.06158 * 118.64183 * 19 17 15 21 21 O 1.44425 * 104.80547 * 23.97677 * 20 19 17 22 22 C 1.44428 * 105.27650 * 319.48747 * 21 20 19 23 23 H 1.09008 * 109.47369 * 186.58315 * 1 2 3 24 24 H 1.09000 * 109.47123 * 306.58071 * 1 2 3 25 25 H 1.08997 * 109.47497 * 66.58467 * 1 2 3 26 26 H 1.09002 * 109.46882 * 240.00286 * 2 1 3 27 27 H 1.08996 * 109.47072 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47409 * 300.00421 * 3 2 1 29 29 H 1.09002 * 109.47002 * 60.00359 * 3 2 1 30 30 H 0.97003 * 119.99699 * 179.97438 * 9 8 6 31 31 H 0.97003 * 119.99256 * 94.99978 * 14 4 2 32 32 H 1.08999 * 110.50955 * 237.28868 * 19 17 15 33 33 H 1.08995 * 110.50852 * 359.97438 * 19 17 15 34 34 H 1.09005 * 110.37178 * 142.81101 * 20 19 17 35 35 H 1.09000 * 110.37369 * 265.03641 * 20 19 17 36 36 H 1.08997 * 110.36960 * 281.68017 * 22 21 20 37 37 H 1.08995 * 110.37303 * 159.33833 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6785 -1.7497 1.2480 6 6 1.5351 -0.0128 2.4797 7 1 1.4328 1.0623 2.4800 8 6 1.2038 -0.7372 3.6051 9 7 0.6746 -0.1307 4.6453 10 14 1.5065 -2.5799 3.6526 11 1 0.3153 -3.2909 3.1228 12 1 1.7541 -3.0049 5.0536 13 1 2.6906 -2.9085 2.8188 14 7 3.5050 -0.7187 1.2507 15 6 4.1813 -1.6731 0.5811 16 8 3.5771 -2.5343 -0.0223 17 6 5.6883 -1.6706 0.5832 18 1 6.0680 -1.7138 1.6040 19 6 6.2327 -2.8548 -0.2469 20 6 7.0374 -2.1803 -1.3799 21 8 7.3987 -0.8842 -0.8550 22 6 6.2285 -0.4209 -0.1466 23 1 -0.3634 -1.0209 0.1178 24 1 -0.3633 0.6124 0.8252 25 1 -0.3634 0.4084 -0.9430 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4424 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 0.4412 -0.6404 5.4369 31 1 3.9882 -0.0301 1.7336 32 1 6.8834 -3.4815 0.3630 33 1 5.4118 -3.4421 -0.6583 34 1 7.9318 -2.7604 -1.6074 35 1 6.4197 -2.0716 -2.2713 36 1 5.4861 -0.0407 -0.8483 37 1 6.5015 0.3506 0.5734 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259955252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:15 Heat of formation + Delta-G solvation = -123.757768 kcal Electronic energy + Delta-G solvation = -18412.852020 eV Core-core repulsion = 15574.545560 eV Total energy + Delta-G solvation = -2838.306460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.32506 -39.52934 -37.67379 -34.39753 -34.16180 -33.03766 -30.38405 -28.88526 -27.82213 -25.19279 -24.16522 -23.08192 -21.10130 -20.27185 -19.36906 -18.19285 -17.55555 -16.77208 -16.44134 -16.32446 -15.97716 -15.57103 -15.35400 -14.80991 -14.60466 -14.11680 -13.88692 -13.35493 -13.19600 -13.00817 -12.93825 -12.77256 -12.45067 -12.25753 -12.21356 -11.91571 -11.77953 -11.72765 -11.59263 -10.98958 -10.90143 -10.84278 -10.60155 -9.64629 -8.38381 -6.44391 1.24024 1.31155 1.43733 1.76168 2.26033 2.39337 2.97048 3.22605 3.47210 3.83589 3.92931 4.13156 4.23447 4.26907 4.32517 4.39732 4.41897 4.72572 4.77061 4.81575 4.89343 4.95647 4.98783 5.01695 5.05675 5.15679 5.22499 5.37771 5.39480 5.55798 5.70944 5.72762 5.94177 6.17229 6.70817 6.96609 7.26794 7.48836 8.74939 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024544 B = 0.008393 C = 0.007279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.541176 B = 3335.324305 C = 3845.867733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C -0.126 4.126 4 C 0.239 3.761 5 H 0.022 0.978 6 C -0.503 4.503 7 H 0.068 0.932 8 C 0.045 3.955 9 N -0.922 5.922 10 Si 0.920 3.080 11 H -0.282 1.282 12 H -0.285 1.285 13 H -0.264 1.264 14 N -0.703 5.703 15 C 0.503 3.497 16 O -0.596 6.596 17 C -0.147 4.147 18 H 0.120 0.880 19 C -0.147 4.147 20 C 0.047 3.953 21 O -0.385 6.385 22 C 0.064 3.936 23 H 0.033 0.967 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.268 0.732 31 H 0.403 0.597 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.593 -0.919 -8.899 13.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.111 4.111 3 C -0.183 4.183 4 C 0.137 3.863 5 H 0.040 0.960 6 C -0.541 4.541 7 H 0.086 0.914 8 C -0.157 4.157 9 N -0.560 5.560 10 Si 0.747 3.253 11 H -0.208 1.208 12 H -0.211 1.211 13 H -0.189 1.189 14 N -0.351 5.351 15 C 0.289 3.711 16 O -0.478 6.478 17 C -0.169 4.169 18 H 0.138 0.862 19 C -0.185 4.185 20 C -0.029 4.029 21 O -0.304 6.304 22 C -0.013 4.013 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.238 0.762 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.279 -1.409 -9.146 13.831 hybrid contribution -0.365 -0.881 0.820 1.258 sum 9.914 -2.290 -8.326 13.147 Atomic orbital electron populations 1.21606 0.95008 1.00642 1.01188 1.21243 0.96156 0.97200 0.96452 1.21648 1.00493 0.94958 1.01223 1.18983 0.77798 0.95219 0.94312 0.96004 1.21200 1.41827 0.95254 0.95839 0.91360 1.25606 0.93762 1.00890 0.95444 1.69981 1.42471 1.37783 1.05785 0.86162 0.79424 0.82865 0.76870 1.20791 1.21126 1.18856 1.47202 1.08851 1.29028 1.50054 1.20937 0.90494 0.81284 0.78347 1.90578 1.71347 1.39424 1.46501 1.22798 0.91348 0.98862 1.03856 0.86172 1.22950 1.00588 0.97398 0.97554 1.23537 1.00218 0.83640 0.95535 1.89089 1.35327 1.34456 1.71529 1.23365 0.87600 0.95005 0.95332 0.94802 0.92968 0.91769 0.93785 0.92789 0.92449 0.93063 0.92227 0.76161 0.88819 0.90263 0.86534 0.92334 0.92337 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.82 71.98 0.63 -4.15 16 2 C -0.09 -3.53 2.90 -10.80 -0.03 -3.56 16 3 C -0.13 -4.22 8.79 71.98 0.63 -3.59 16 4 C 0.24 10.59 1.29 44.24 0.06 10.64 16 5 H 0.02 1.11 5.11 -2.38 -0.01 1.09 16 6 C -0.50 -25.19 7.55 25.60 0.19 -25.00 16 7 H 0.07 3.65 6.34 -2.92 -0.02 3.63 16 8 C 0.04 2.41 5.47 84.65 0.46 2.87 16 9 N -0.92 -52.76 13.96 21.45 0.30 -52.46 16 10 Si 0.92 44.35 26.91 68.60 1.85 46.19 16 11 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 13 H -0.26 -12.83 7.00 99.48 0.70 -12.13 16 14 N -0.70 -26.77 4.29 -446.08 -1.91 -28.68 16 15 C 0.50 18.67 6.98 87.66 0.61 19.29 16 16 O -0.60 -26.71 14.94 -3.04 -0.05 -26.76 16 17 C -0.15 -4.04 3.51 -10.52 -0.04 -4.08 16 18 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 19 C -0.15 -3.72 6.67 31.61 0.21 -3.50 16 20 C 0.05 1.03 7.63 72.48 0.55 1.58 16 21 O -0.39 -9.64 11.65 -148.98 -1.74 -11.37 16 22 C 0.06 1.53 7.17 72.49 0.52 2.05 16 23 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.05 2.13 7.46 -2.39 -0.02 2.11 16 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 1.65 7.60 -2.39 -0.02 1.63 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 1.88 6.31 -2.39 -0.02 1.86 16 30 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.40 13.56 8.59 -92.71 -0.80 12.77 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 2.40 6.50 -2.39 -0.02 2.38 16 34 H 0.12 1.92 8.14 -2.38 -0.02 1.91 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.48 7.86 -2.39 -0.02 1.46 16 37 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -63.18 297.10 2.51 -60.67 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.25 Total: 19.86 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 3.81 Total: -7.45 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -1.61 Total: -81.15 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.78 Total: -38.13 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.85 Total: 46.19 kcal Total: -63.18 2.51 -60.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.085 kcal (2) G-P(sol) polarization free energy of solvation -63.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds