Wall clock time and date at job start Mon Mar 30 2020 04:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.52997 * 109.47213 * 120.00225 * 2 1 3 5 5 H 1.09003 * 109.47394 * 296.05067 * 4 2 1 6 6 C 1.50706 * 109.47454 * 56.04942 * 4 2 1 7 7 H 1.07999 * 119.99259 * 25.61242 * 6 4 2 8 8 C 1.37869 * 120.00458 * 205.61481 * 6 4 2 9 9 N 1.31516 * 119.99804 * 5.33094 * 8 6 4 10 10 Si 1.86799 * 120.00319 * 185.33305 * 8 6 4 11 11 H 1.48504 * 109.47115 * 89.99798 * 10 8 6 12 12 H 1.48495 * 109.47202 * 209.99702 * 10 8 6 13 13 H 1.48498 * 109.46898 * 329.99934 * 10 8 6 14 14 N 1.46499 * 109.47122 * 176.05208 * 4 2 1 15 15 C 1.34767 * 120.00140 * 85.00025 * 14 4 2 16 16 O 1.21282 * 120.00210 * 0.02562 * 15 14 4 17 17 C 1.50701 * 120.00294 * 180.02562 * 15 14 4 18 18 H 1.09004 * 111.01754 * 55.77603 * 17 15 14 19 19 C 1.55306 * 111.12794 * 179.97438 * 17 15 14 20 20 C 1.54391 * 102.25046 * 152.05242 * 19 17 15 21 21 O 1.43238 * 107.58822 * 338.64286 * 20 19 17 22 22 C 1.43651 * 109.97270 * 358.29082 * 21 20 19 23 23 H 1.09005 * 109.47065 * 294.22680 * 1 2 3 24 24 H 1.08994 * 109.47392 * 54.22792 * 1 2 3 25 25 H 1.08997 * 109.47189 * 174.22833 * 1 2 3 26 26 H 1.09001 * 109.46715 * 240.00027 * 2 1 3 27 27 H 1.08999 * 109.47033 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47242 * 300.00441 * 3 2 1 29 29 H 1.09009 * 109.46879 * 59.99903 * 3 2 1 30 30 H 0.96998 * 119.99940 * 180.02562 * 9 8 6 31 31 H 0.97003 * 119.99312 * 264.99741 * 14 4 2 32 32 H 1.09000 * 110.84226 * 33.86623 * 19 17 15 33 33 H 1.08994 * 110.84994 * 270.24439 * 19 17 15 34 34 H 1.09002 * 109.82896 * 98.15948 * 20 19 17 35 35 H 1.09000 * 109.82578 * 219.04296 * 20 19 17 36 36 H 1.08997 * 110.30605 * 143.34172 * 22 21 20 37 37 H 1.08989 * 110.30825 * 265.50820 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7357 -0.1683 2.1378 6 6 1.4594 -2.1111 1.2991 7 1 1.1545 -2.6019 0.3867 8 6 1.3175 -2.7559 2.5095 9 7 1.5898 -2.1211 3.6286 10 14 0.7383 -4.5311 2.5598 11 1 1.9133 -5.4371 2.4969 12 1 -0.0064 -4.7733 3.8215 13 1 -0.1522 -4.7943 1.4010 14 7 3.5020 -0.8042 1.2026 15 6 4.2498 0.2244 1.6488 16 8 3.7126 1.2184 2.0894 17 6 5.7536 0.1394 1.6003 18 1 6.1011 -0.0673 0.5880 19 6 6.4058 1.4319 2.1624 20 6 7.7577 0.9113 2.6962 21 8 7.6236 -0.4982 2.9131 22 6 6.2857 -0.9176 2.6005 23 1 -0.3633 0.4217 0.9372 24 1 -0.3634 0.6007 -0.8337 25 1 -0.3633 -1.0224 -0.1033 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.4903 -2.5748 4.4801 31 1 3.9316 -1.5994 0.8505 32 1 5.8049 1.8498 2.9701 33 1 6.5578 2.1656 1.3709 34 1 8.5420 1.0996 1.9629 35 1 8.0014 1.4096 3.6344 36 1 6.2970 -1.9045 2.1378 37 1 5.6724 -0.9284 3.5015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259955255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:17 Heat of formation + Delta-G solvation = -105.129270 kcal Electronic energy + Delta-G solvation = -18347.126463 eV Core-core repulsion = 15509.627795 eV Total energy + Delta-G solvation = -2837.498667 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73324 -38.07151 -35.54637 -32.61018 -32.25314 -31.63279 -29.14143 -27.09144 -25.88709 -23.51935 -22.49619 -21.64377 -19.30697 -18.90706 -17.31432 -16.59872 -16.01600 -15.18464 -14.87500 -14.78797 -14.37309 -13.92766 -13.33834 -13.18211 -12.93060 -12.47944 -11.94110 -11.81352 -11.44770 -11.29967 -11.27856 -11.10966 -11.05720 -10.87108 -10.66678 -10.54572 -10.17711 -10.01935 -9.59209 -9.38468 -9.16173 -8.85878 -8.62252 -7.60317 -6.21729 -4.33652 3.18341 3.27975 3.29665 3.54054 3.92611 4.26167 4.38657 4.65337 5.09124 5.14676 5.26985 5.39518 5.42912 5.72194 5.87814 5.92639 5.98768 6.02999 6.06004 6.13501 6.20992 6.37682 6.46372 6.69616 6.76980 6.84708 7.09060 7.15544 7.18546 7.26972 7.59226 7.69770 7.86717 8.07562 8.81963 8.87678 9.34909 9.37011 10.84227 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.008516 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.171336 B = 3287.000175 C = 4300.691959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.098 4.098 3 C -0.134 4.134 4 C 0.258 3.742 5 H 0.073 0.927 6 C -0.530 4.530 7 H 0.061 0.939 8 C 0.076 3.924 9 N -0.866 5.866 10 Si 0.892 3.108 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.272 1.272 14 N -0.695 5.695 15 C 0.510 3.490 16 O -0.553 6.553 17 C -0.151 4.151 18 H 0.100 0.900 19 C -0.135 4.135 20 C 0.051 3.949 21 O -0.388 6.388 22 C 0.067 3.933 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.026 0.974 29 H 0.054 0.946 30 H 0.265 0.735 31 H 0.383 0.617 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.202 2.983 -4.543 9.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.118 4.118 3 C -0.191 4.191 4 C 0.158 3.842 5 H 0.091 0.909 6 C -0.568 4.568 7 H 0.079 0.921 8 C -0.130 4.130 9 N -0.502 5.502 10 Si 0.719 3.281 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.196 1.196 14 N -0.342 5.342 15 C 0.294 3.706 16 O -0.433 6.433 17 C -0.173 4.173 18 H 0.118 0.882 19 C -0.173 4.173 20 C -0.026 4.026 21 O -0.307 6.307 22 C -0.010 4.010 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.215 0.785 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.935 3.539 -3.948 8.729 hybrid contribution -0.172 -1.282 -0.148 1.302 sum 6.763 2.257 -4.095 8.222 Atomic orbital electron populations 1.21595 0.95652 1.01307 0.99642 1.21466 0.95595 0.94929 0.99800 1.21889 1.00621 0.96976 0.99631 1.18905 0.75455 0.95905 0.93918 0.90900 1.21203 1.42054 1.00487 0.93057 0.92073 1.25124 0.94063 0.98141 0.95716 1.69999 1.46109 1.36384 0.97675 0.86604 0.78942 0.84803 0.77736 1.20448 1.21124 1.19636 1.47370 1.09587 1.16539 1.60699 1.19938 0.87372 0.84412 0.78860 1.90622 1.73590 1.31837 1.47285 1.23106 0.95848 0.97129 1.01205 0.88216 1.22967 0.95203 0.97001 1.02095 1.23136 0.97423 0.81873 1.00131 1.88362 1.30222 1.22934 1.89186 1.23294 0.82759 0.97247 0.97667 0.93311 0.95203 0.92109 0.93362 0.93401 0.95511 0.92722 0.92510 0.78481 0.88993 0.90126 0.91607 0.91582 0.89226 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.76 37.16 0.33 -2.12 16 2 C -0.10 -2.05 2.70 -90.62 -0.24 -2.29 16 3 C -0.13 -2.67 7.77 37.16 0.29 -2.38 16 4 C 0.26 6.12 1.85 -69.08 -0.13 5.99 16 5 H 0.07 2.07 6.95 -51.93 -0.36 1.71 16 6 C -0.53 -13.20 7.27 -34.44 -0.25 -13.45 16 7 H 0.06 1.50 7.58 -52.49 -0.40 1.10 16 8 C 0.08 1.97 5.45 -17.82 -0.10 1.87 16 9 N -0.87 -23.86 12.91 55.43 0.72 -23.15 16 10 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 13 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 14 N -0.70 -14.59 5.01 -54.93 -0.28 -14.86 16 15 C 0.51 10.34 5.67 -10.99 -0.06 10.28 16 16 O -0.55 -13.00 12.84 5.56 0.07 -12.93 16 17 C -0.15 -2.40 3.49 -89.52 -0.31 -2.71 16 18 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 19 C -0.13 -1.95 6.18 -24.78 -0.15 -2.11 16 20 C 0.05 0.67 7.79 37.89 0.30 0.96 16 21 O -0.39 -6.16 11.36 -35.23 -0.40 -6.56 16 22 C 0.07 1.08 7.25 38.18 0.28 1.35 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 1.22 7.18 -51.93 -0.37 0.85 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.97 5.67 -51.93 -0.29 0.67 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 1.18 7.79 -51.92 -0.40 0.77 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.38 7.31 8.59 -40.82 -0.35 6.96 16 32 H 0.09 1.52 7.36 -51.93 -0.38 1.13 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.28 8.02 -51.94 -0.42 0.86 16 LS Contribution 297.88 15.07 4.49 4.49 Total: -1.00 -28.64 297.88 -6.40 -35.04 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.92 Total: 7.72 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.06 Total: -4.61 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.44 Total: -38.01 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.33 Total: -19.48 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.64 -6.40 -35.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.088 kcal (2) G-P(sol) polarization free energy of solvation -28.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds