Wall clock time and date at job start Mon Mar 30 2020 04:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.52997 * 109.47213 * 120.00225 * 2 1 3 5 5 H 1.09003 * 109.47394 * 296.05067 * 4 2 1 6 6 C 1.50706 * 109.47454 * 56.04942 * 4 2 1 7 7 H 1.07999 * 119.99259 * 25.61242 * 6 4 2 8 8 C 1.37869 * 120.00458 * 205.61481 * 6 4 2 9 9 N 1.31516 * 119.99804 * 5.33094 * 8 6 4 10 10 Si 1.86799 * 120.00319 * 185.33305 * 8 6 4 11 11 H 1.48504 * 109.47115 * 89.99798 * 10 8 6 12 12 H 1.48495 * 109.47202 * 209.99702 * 10 8 6 13 13 H 1.48498 * 109.46898 * 329.99934 * 10 8 6 14 14 N 1.46499 * 109.47122 * 176.05208 * 4 2 1 15 15 C 1.34767 * 120.00140 * 85.00025 * 14 4 2 16 16 O 1.21282 * 120.00210 * 0.02562 * 15 14 4 17 17 C 1.50701 * 120.00294 * 180.02562 * 15 14 4 18 18 H 1.09004 * 111.01754 * 55.77603 * 17 15 14 19 19 C 1.55306 * 111.12794 * 179.97438 * 17 15 14 20 20 C 1.54391 * 102.25046 * 152.05242 * 19 17 15 21 21 O 1.43238 * 107.58822 * 338.64286 * 20 19 17 22 22 C 1.43651 * 109.97270 * 358.29082 * 21 20 19 23 23 H 1.09005 * 109.47065 * 294.22680 * 1 2 3 24 24 H 1.08994 * 109.47392 * 54.22792 * 1 2 3 25 25 H 1.08997 * 109.47189 * 174.22833 * 1 2 3 26 26 H 1.09001 * 109.46715 * 240.00027 * 2 1 3 27 27 H 1.08999 * 109.47033 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47242 * 300.00441 * 3 2 1 29 29 H 1.09009 * 109.46879 * 59.99903 * 3 2 1 30 30 H 0.96998 * 119.99940 * 180.02562 * 9 8 6 31 31 H 0.97003 * 119.99312 * 264.99741 * 14 4 2 32 32 H 1.09000 * 110.84226 * 33.86623 * 19 17 15 33 33 H 1.08994 * 110.84994 * 270.24439 * 19 17 15 34 34 H 1.09002 * 109.82896 * 98.15948 * 20 19 17 35 35 H 1.09000 * 109.82578 * 219.04296 * 20 19 17 36 36 H 1.08997 * 110.30605 * 143.34172 * 22 21 20 37 37 H 1.08989 * 110.30825 * 265.50820 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7357 -0.1683 2.1378 6 6 1.4594 -2.1111 1.2991 7 1 1.1545 -2.6019 0.3867 8 6 1.3175 -2.7559 2.5095 9 7 1.5898 -2.1211 3.6286 10 14 0.7383 -4.5311 2.5598 11 1 1.9133 -5.4371 2.4969 12 1 -0.0064 -4.7733 3.8215 13 1 -0.1522 -4.7943 1.4010 14 7 3.5020 -0.8042 1.2026 15 6 4.2498 0.2244 1.6488 16 8 3.7126 1.2184 2.0894 17 6 5.7536 0.1394 1.6003 18 1 6.1011 -0.0673 0.5880 19 6 6.4058 1.4319 2.1624 20 6 7.7577 0.9113 2.6962 21 8 7.6236 -0.4982 2.9131 22 6 6.2857 -0.9176 2.6005 23 1 -0.3633 0.4217 0.9372 24 1 -0.3634 0.6007 -0.8337 25 1 -0.3633 -1.0224 -0.1033 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.4903 -2.5748 4.4801 31 1 3.9316 -1.5994 0.8505 32 1 5.8049 1.8498 2.9701 33 1 6.5578 2.1656 1.3709 34 1 8.5420 1.0996 1.9629 35 1 8.0014 1.4096 3.6344 36 1 6.2970 -1.9045 2.1378 37 1 5.6724 -0.9284 3.5015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259955255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:17 Heat of formation + Delta-G solvation = -124.565972 kcal Electronic energy + Delta-G solvation = -18347.969301 eV Core-core repulsion = 15509.627795 eV Total energy + Delta-G solvation = -2838.341506 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18390 -39.54758 -37.28754 -34.43769 -33.99687 -32.99377 -30.38950 -28.91052 -27.53630 -25.24447 -23.94334 -22.90654 -20.87660 -20.66561 -18.99808 -18.07039 -17.47130 -16.87964 -16.60148 -16.14545 -15.92775 -15.42969 -14.96325 -14.60350 -14.38333 -14.12149 -13.51854 -13.45351 -13.17060 -12.90532 -12.83941 -12.77067 -12.42490 -12.28348 -12.21696 -11.90322 -11.86059 -11.75872 -11.35416 -11.03540 -10.71640 -10.57181 -10.43086 -9.37030 -8.18652 -6.36442 1.42166 1.45485 1.54662 1.93477 2.39248 2.53397 2.94151 3.33651 3.42306 3.90829 3.97051 4.19199 4.26038 4.27833 4.32871 4.41101 4.56464 4.70312 4.77512 4.85767 4.90671 4.97068 5.04685 5.11432 5.17475 5.18563 5.40751 5.45792 5.60570 5.66962 5.81210 5.91491 6.03309 6.23688 6.84437 7.16394 7.37909 7.71455 8.87590 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.008516 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.171336 B = 3287.000175 C = 4300.691959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.097 4.097 3 C -0.122 4.122 4 C 0.263 3.737 5 H 0.018 0.982 6 C -0.531 4.531 7 H 0.068 0.932 8 C 0.028 3.972 9 N -0.909 5.909 10 Si 0.956 3.044 11 H -0.271 1.271 12 H -0.293 1.293 13 H -0.262 1.262 14 N -0.695 5.695 15 C 0.506 3.494 16 O -0.590 6.590 17 C -0.142 4.142 18 H 0.133 0.867 19 C -0.132 4.132 20 C 0.050 3.950 21 O -0.398 6.398 22 C 0.072 3.928 23 H 0.027 0.973 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.027 0.973 30 H 0.262 0.738 31 H 0.394 0.606 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.375 2.432 -6.615 10.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.116 4.116 3 C -0.180 4.180 4 C 0.162 3.838 5 H 0.036 0.964 6 C -0.569 4.569 7 H 0.086 0.914 8 C -0.175 4.175 9 N -0.546 5.546 10 Si 0.782 3.218 11 H -0.197 1.197 12 H -0.219 1.219 13 H -0.187 1.187 14 N -0.342 5.342 15 C 0.292 3.708 16 O -0.472 6.472 17 C -0.163 4.163 18 H 0.151 0.849 19 C -0.170 4.170 20 C -0.026 4.026 21 O -0.318 6.318 22 C -0.005 4.005 23 H 0.046 0.954 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.228 0.772 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.128 2.976 -6.045 10.558 hybrid contribution -0.527 -1.028 0.496 1.257 sum 7.601 1.948 -5.549 9.610 Atomic orbital electron populations 1.21546 0.94898 1.01404 0.99879 1.21433 0.96284 0.95242 0.98686 1.21748 1.00204 0.96360 0.99661 1.18602 0.76972 0.95062 0.93162 0.96409 1.21455 1.41518 1.00795 0.93132 0.91377 1.25869 0.94371 1.01872 0.95362 1.70159 1.48324 1.37991 0.98168 0.85589 0.78603 0.80181 0.77453 1.19669 1.21876 1.18651 1.47046 1.08802 1.17381 1.61020 1.20591 0.89315 0.83388 0.77509 1.90610 1.74867 1.33229 1.48533 1.23072 0.92080 0.98110 1.03066 0.84891 1.22964 0.95417 0.96778 1.01878 1.23332 0.97225 0.80415 1.01602 1.88355 1.29468 1.24534 1.89426 1.23170 0.82705 0.98216 0.96386 0.95358 0.92018 0.92673 0.91846 0.93887 0.92586 0.95389 0.92925 0.77194 0.91816 0.87874 0.88426 0.90637 0.87583 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.61 8.76 71.98 0.63 -3.98 16 2 C -0.10 -3.96 2.70 -10.79 -0.03 -3.99 16 3 C -0.12 -4.79 7.77 71.98 0.56 -4.23 16 4 C 0.26 12.69 1.85 44.25 0.08 12.77 16 5 H 0.02 1.06 6.95 -2.39 -0.02 1.04 16 6 C -0.53 -26.48 7.27 25.60 0.19 -26.29 16 7 H 0.07 3.26 7.58 -2.91 -0.02 3.24 16 8 C 0.03 1.44 5.45 84.65 0.46 1.90 16 9 N -0.91 -51.78 12.91 21.44 0.28 -51.51 16 10 Si 0.96 40.87 29.54 68.60 2.03 42.90 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 14 N -0.70 -29.21 5.01 -446.10 -2.23 -31.44 16 15 C 0.51 20.59 5.67 87.66 0.50 21.09 16 16 O -0.59 -28.57 12.84 -3.04 -0.04 -28.61 16 17 C -0.14 -4.29 3.49 -10.08 -0.04 -4.33 16 18 H 0.13 3.20 8.14 -2.38 -0.02 3.18 16 19 C -0.13 -3.63 6.18 31.86 0.20 -3.43 16 20 C 0.05 1.19 7.79 72.45 0.56 1.75 16 21 O -0.40 -11.87 11.36 -148.98 -1.69 -13.57 16 22 C 0.07 2.25 7.25 72.65 0.53 2.78 16 23 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.05 2.16 7.18 -2.39 -0.02 2.14 16 26 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.04 1.69 5.67 -2.39 -0.01 1.68 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.03 1.21 7.79 -2.38 -0.02 1.19 16 30 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.39 14.72 8.59 -92.71 -0.80 13.92 16 32 H 0.06 2.12 7.36 -2.39 -0.02 2.10 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 36 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.04 1.40 8.02 -2.39 -0.02 1.38 16 Total: -1.00 -63.62 297.88 2.23 -61.39 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.25 Total: 26.80 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 3.64 Total: -5.96 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -1.96 Total: -82.95 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -1.73 Total: -42.18 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -63.62 2.23 -61.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.178 kcal (2) G-P(sol) polarization free energy of solvation -63.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds