Wall clock time and date at job start Mon Mar 30 2020 04:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47315 * 2 1 4 4 C 1.53001 * 109.47198 * 120.00168 * 2 1 3 5 5 H 1.08999 * 109.47004 * 301.99887 * 4 2 1 6 6 C 1.50703 * 109.47230 * 181.99535 * 4 2 1 7 7 H 1.07998 * 119.99895 * 325.21602 * 6 4 2 8 8 C 1.37877 * 119.99815 * 145.21688 * 6 4 2 9 9 N 1.31512 * 120.00017 * 6.30410 * 8 6 4 10 10 Si 1.86796 * 119.99754 * 186.30821 * 8 6 4 11 11 H 1.48498 * 109.47153 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47413 * 119.99787 * 10 8 6 13 13 H 1.48500 * 109.47131 * 239.99745 * 10 8 6 14 14 N 1.46504 * 109.47061 * 61.99686 * 4 2 1 15 15 C 1.34776 * 119.99895 * 275.00104 * 14 4 2 16 16 O 1.21285 * 120.00209 * 359.97438 * 15 14 4 17 17 C 1.50699 * 119.99822 * 179.72482 * 15 14 4 18 18 H 1.08999 * 110.43717 * 298.90882 * 17 15 14 19 19 C 1.54819 * 110.48777 * 176.22086 * 17 15 14 20 20 C 1.54994 * 102.09195 * 220.44393 * 19 17 15 21 21 O 1.44384 * 103.49129 * 37.02147 * 20 19 17 22 22 C 1.43741 * 106.97642 * 319.94065 * 21 20 19 23 23 H 1.08996 * 109.47139 * 299.99463 * 1 2 3 24 24 H 1.09001 * 109.47130 * 60.00145 * 1 2 3 25 25 H 1.09002 * 109.46776 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47109 * 240.00170 * 2 1 3 27 27 H 1.09002 * 109.47420 * 178.81552 * 3 2 1 28 28 H 1.08999 * 109.47271 * 298.81920 * 3 2 1 29 29 H 1.09002 * 109.46744 * 58.81323 * 3 2 1 30 30 H 0.97004 * 119.99771 * 179.97438 * 9 8 6 31 31 H 0.97004 * 120.00103 * 94.99892 * 14 4 2 32 32 H 1.08997 * 110.90664 * 338.63750 * 19 17 15 33 33 H 1.08994 * 110.90596 * 102.24408 * 19 17 15 34 34 H 1.09001 * 110.61857 * 278.52480 * 20 19 17 35 35 H 1.08997 * 110.61752 * 155.52353 * 20 19 17 36 36 H 1.09001 * 109.87754 * 267.08909 * 22 21 20 37 37 H 1.08997 * 109.88304 * 145.93918 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6477 -0.2286 2.1388 6 6 3.5462 -0.6786 1.2742 7 1 4.1033 -0.7302 0.3504 8 6 4.2130 -0.5737 2.4765 9 7 3.5441 -0.6356 3.6070 10 14 6.0666 -0.3434 2.4994 11 1 6.5781 -0.3064 1.1057 12 1 6.3986 0.9324 3.1830 13 1 6.6969 -1.4737 3.2276 14 7 1.5914 -2.1157 1.2253 15 6 0.3701 -2.4388 1.6950 16 8 -0.3573 -1.5752 2.1379 17 6 -0.0938 -3.8723 1.6647 18 1 -0.1293 -4.2393 0.6390 19 6 -1.4804 -4.0075 2.3399 20 6 -1.3271 -5.3292 3.1348 21 8 0.0396 -5.2867 3.5985 22 6 0.8317 -4.7570 2.5224 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1299 1.4425 0.0212 28 1 1.6941 1.9502 -0.9004 29 1 1.6594 1.9623 0.8792 30 1 4.0133 -0.5622 4.4528 31 1 2.1733 -2.8065 0.8715 32 1 -1.6696 -3.1697 3.0111 33 1 -2.2700 -4.0919 1.5933 34 1 -1.4849 -6.1891 2.4838 35 1 -2.0178 -5.3526 3.9776 36 1 1.2290 -5.5726 1.9182 37 1 1.6493 -4.1582 2.9237 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259955258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:19 Heat of formation + Delta-G solvation = -103.527351 kcal Electronic energy + Delta-G solvation = -18396.068422 eV Core-core repulsion = 15558.639219 eV Total energy + Delta-G solvation = -2837.429203 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.75494 -37.97955 -35.50548 -32.57170 -32.27203 -31.58240 -29.04048 -27.04917 -25.84872 -23.45737 -22.68235 -21.57551 -19.21595 -18.87718 -17.24906 -16.41491 -15.98643 -15.43108 -14.94837 -14.72151 -14.36777 -14.04860 -13.25749 -13.01449 -12.79394 -12.34316 -11.79690 -11.76583 -11.53705 -11.26808 -11.21213 -11.05504 -11.00793 -10.92778 -10.64668 -10.49377 -10.12453 -10.00647 -9.64949 -9.51761 -9.03840 -8.88499 -8.59240 -7.56380 -6.19600 -4.32053 3.19160 3.29479 3.31912 3.58221 4.11464 4.25419 4.33712 4.72638 5.11487 5.17305 5.31810 5.36254 5.48701 5.71640 5.83758 5.94219 5.97881 6.02750 6.07341 6.20071 6.24436 6.43226 6.46769 6.71996 6.78647 6.87055 7.03486 7.17949 7.21295 7.31380 7.61584 7.71840 7.89407 8.07795 8.85384 8.89859 9.37043 9.39874 10.86180 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.008470 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.923946 B = 3304.908919 C = 4257.083850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.098 4.098 3 C -0.126 4.126 4 C 0.257 3.743 5 H 0.075 0.925 6 C -0.529 4.529 7 H 0.060 0.940 8 C 0.076 3.924 9 N -0.866 5.866 10 Si 0.892 3.108 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.283 1.283 14 N -0.698 5.698 15 C 0.508 3.492 16 O -0.553 6.553 17 C -0.151 4.151 18 H 0.098 0.902 19 C -0.138 4.138 20 C 0.045 3.955 21 O -0.376 6.376 22 C 0.057 3.943 23 H 0.055 0.945 24 H 0.025 0.975 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.045 0.955 30 H 0.265 0.735 31 H 0.382 0.618 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.506 -6.536 -4.925 9.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 C -0.184 4.184 4 C 0.157 3.843 5 H 0.093 0.907 6 C -0.568 4.568 7 H 0.078 0.922 8 C -0.131 4.131 9 N -0.501 5.501 10 Si 0.720 3.280 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.209 1.209 14 N -0.345 5.345 15 C 0.292 3.708 16 O -0.433 6.433 17 C -0.173 4.173 18 H 0.116 0.884 19 C -0.176 4.176 20 C -0.031 4.031 21 O -0.295 6.295 22 C -0.020 4.020 23 H 0.074 0.926 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.215 0.785 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.902 -5.937 -4.200 9.366 hybrid contribution 1.251 -0.281 -0.352 1.329 sum -4.651 -6.218 -4.552 9.001 Atomic orbital electron populations 1.21888 0.96742 1.00796 0.99670 1.21473 0.93896 0.96523 0.99869 1.21618 1.02015 0.95681 0.99093 1.18954 0.93399 0.77862 0.94080 0.90685 1.21204 0.90705 1.52096 0.92749 0.92157 1.25129 0.98614 0.93687 0.95693 1.70020 1.35957 1.46584 0.97530 0.86541 0.85181 0.77970 0.78342 1.19494 1.20719 1.20923 1.47352 1.14358 1.12426 1.60342 1.20076 0.83118 0.88904 0.78686 1.90609 1.55095 1.50131 1.47422 1.22808 0.96897 0.96312 1.01259 0.88408 1.23063 0.95421 0.98977 1.00121 1.23569 0.84476 0.96607 0.98485 1.88879 1.18256 1.84939 1.37449 1.23170 0.94476 0.95756 0.88580 0.92626 0.95543 0.93581 0.93410 0.91654 0.95195 0.93605 0.92525 0.78529 0.88468 0.90466 0.92596 0.89149 0.92134 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 7.74 37.16 0.29 -2.41 16 2 C -0.10 -2.06 2.69 -90.62 -0.24 -2.30 16 3 C -0.13 -2.53 8.94 37.16 0.33 -2.19 16 4 C 0.26 6.17 1.91 -69.08 -0.13 6.03 16 5 H 0.08 2.16 6.84 -51.93 -0.36 1.80 16 6 C -0.53 -13.31 7.11 -34.44 -0.24 -13.55 16 7 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 8 C 0.08 1.97 5.45 -17.82 -0.10 1.88 16 9 N -0.87 -24.23 12.86 55.43 0.71 -23.51 16 10 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 N -0.70 -14.80 4.82 -54.93 -0.26 -15.06 16 15 C 0.51 10.48 5.41 -10.99 -0.06 10.42 16 16 O -0.55 -13.26 12.60 5.55 0.07 -13.19 16 17 C -0.15 -2.40 3.44 -90.24 -0.31 -2.71 16 18 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 19 C -0.14 -2.03 6.50 -24.72 -0.16 -2.19 16 20 C 0.05 0.60 7.72 38.21 0.29 0.89 16 21 O -0.38 -6.39 11.52 -35.23 -0.41 -6.79 16 22 C 0.06 0.92 7.29 37.73 0.28 1.19 16 23 H 0.05 1.22 7.66 -51.93 -0.40 0.82 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.93 5.72 -51.93 -0.30 0.64 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 1.35 7.11 -51.93 -0.37 0.98 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.38 7.32 8.57 -40.82 -0.35 6.97 16 32 H 0.10 1.70 6.93 -51.93 -0.36 1.34 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.79 7.59 -51.93 -0.39 1.40 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -29.57 296.71 -6.37 -35.94 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.87 Total: 8.03 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -0.06 Total: -4.94 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.45 Total: -38.58 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.34 Total: -19.98 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.57 -6.37 -35.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.591 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds