Wall clock time and date at job start Mon Mar 30 2020 04:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47315 * 2 1 4 4 C 1.53001 * 109.47198 * 120.00168 * 2 1 3 5 5 H 1.08999 * 109.47004 * 301.99887 * 4 2 1 6 6 C 1.50703 * 109.47230 * 181.99535 * 4 2 1 7 7 H 1.07998 * 119.99895 * 325.21602 * 6 4 2 8 8 C 1.37877 * 119.99815 * 145.21688 * 6 4 2 9 9 N 1.31512 * 120.00017 * 6.30410 * 8 6 4 10 10 Si 1.86796 * 119.99754 * 186.30821 * 8 6 4 11 11 H 1.48498 * 109.47153 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47413 * 119.99787 * 10 8 6 13 13 H 1.48500 * 109.47131 * 239.99745 * 10 8 6 14 14 N 1.46504 * 109.47061 * 61.99686 * 4 2 1 15 15 C 1.34776 * 119.99895 * 275.00104 * 14 4 2 16 16 O 1.21285 * 120.00209 * 359.97438 * 15 14 4 17 17 C 1.50699 * 119.99822 * 179.72482 * 15 14 4 18 18 H 1.08999 * 110.43717 * 298.90882 * 17 15 14 19 19 C 1.54819 * 110.48777 * 176.22086 * 17 15 14 20 20 C 1.54994 * 102.09195 * 220.44393 * 19 17 15 21 21 O 1.44384 * 103.49129 * 37.02147 * 20 19 17 22 22 C 1.43741 * 106.97642 * 319.94065 * 21 20 19 23 23 H 1.08996 * 109.47139 * 299.99463 * 1 2 3 24 24 H 1.09001 * 109.47130 * 60.00145 * 1 2 3 25 25 H 1.09002 * 109.46776 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47109 * 240.00170 * 2 1 3 27 27 H 1.09002 * 109.47420 * 178.81552 * 3 2 1 28 28 H 1.08999 * 109.47271 * 298.81920 * 3 2 1 29 29 H 1.09002 * 109.46744 * 58.81323 * 3 2 1 30 30 H 0.97004 * 119.99771 * 179.97438 * 9 8 6 31 31 H 0.97004 * 120.00103 * 94.99892 * 14 4 2 32 32 H 1.08997 * 110.90664 * 338.63750 * 19 17 15 33 33 H 1.08994 * 110.90596 * 102.24408 * 19 17 15 34 34 H 1.09001 * 110.61857 * 278.52480 * 20 19 17 35 35 H 1.08997 * 110.61752 * 155.52353 * 20 19 17 36 36 H 1.09001 * 109.87754 * 267.08909 * 22 21 20 37 37 H 1.08997 * 109.88304 * 145.93918 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6477 -0.2286 2.1388 6 6 3.5462 -0.6786 1.2742 7 1 4.1033 -0.7302 0.3504 8 6 4.2130 -0.5737 2.4765 9 7 3.5441 -0.6356 3.6070 10 14 6.0666 -0.3434 2.4994 11 1 6.5781 -0.3064 1.1057 12 1 6.3986 0.9324 3.1830 13 1 6.6969 -1.4737 3.2276 14 7 1.5914 -2.1157 1.2253 15 6 0.3701 -2.4388 1.6950 16 8 -0.3573 -1.5752 2.1379 17 6 -0.0938 -3.8723 1.6647 18 1 -0.1293 -4.2393 0.6390 19 6 -1.4804 -4.0075 2.3399 20 6 -1.3271 -5.3292 3.1348 21 8 0.0396 -5.2867 3.5985 22 6 0.8317 -4.7570 2.5224 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1299 1.4425 0.0212 28 1 1.6941 1.9502 -0.9004 29 1 1.6594 1.9623 0.8792 30 1 4.0133 -0.5622 4.4528 31 1 2.1733 -2.8065 0.8715 32 1 -1.6696 -3.1697 3.0111 33 1 -2.2700 -4.0919 1.5933 34 1 -1.4849 -6.1891 2.4838 35 1 -2.0178 -5.3526 3.9776 36 1 1.2290 -5.5726 1.9182 37 1 1.6493 -4.1582 2.9237 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259955258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:18 Heat of formation + Delta-G solvation = -124.193672 kcal Electronic energy + Delta-G solvation = -18396.964581 eV Core-core repulsion = 15558.639219 eV Total energy + Delta-G solvation = -2838.325362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.21234 -39.46407 -37.26779 -34.42176 -34.03803 -32.94603 -30.29029 -28.88114 -27.52022 -25.18889 -24.06878 -22.90053 -20.79177 -20.65743 -18.97020 -17.89663 -17.38296 -17.02156 -16.64985 -16.25784 -15.80020 -15.64678 -14.97213 -14.63502 -14.25664 -13.79750 -13.51328 -13.46389 -13.12390 -12.89136 -12.78589 -12.70096 -12.35936 -12.28695 -12.20988 -11.84764 -11.83071 -11.77643 -11.37421 -10.98449 -10.89306 -10.71170 -10.30595 -9.34915 -8.19316 -6.37376 1.40227 1.44390 1.55270 1.97599 2.38300 2.63305 3.00882 3.29106 3.49345 3.95483 4.04166 4.21614 4.28264 4.35115 4.38956 4.43163 4.58481 4.75814 4.77527 4.85180 4.89763 4.96948 5.04964 5.10891 5.17118 5.22241 5.39497 5.47486 5.62231 5.66344 5.80843 5.88804 6.04101 6.22782 6.85116 7.17468 7.37146 7.73823 8.87116 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.008470 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.923946 B = 3304.908919 C = 4257.083850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.096 4.096 3 C -0.122 4.122 4 C 0.262 3.738 5 H 0.018 0.982 6 C -0.528 4.528 7 H 0.068 0.932 8 C 0.025 3.975 9 N -0.911 5.911 10 Si 0.958 3.042 11 H -0.256 1.256 12 H -0.285 1.285 13 H -0.283 1.283 14 N -0.698 5.698 15 C 0.500 3.500 16 O -0.593 6.593 17 C -0.142 4.142 18 H 0.138 0.862 19 C -0.138 4.138 20 C 0.047 3.953 21 O -0.406 6.406 22 C 0.061 3.939 23 H 0.026 0.974 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.394 0.606 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.505 -8.081 -7.179 12.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.116 4.116 3 C -0.180 4.180 4 C 0.160 3.840 5 H 0.037 0.963 6 C -0.567 4.567 7 H 0.087 0.913 8 C -0.178 4.178 9 N -0.549 5.549 10 Si 0.784 3.216 11 H -0.180 1.180 12 H -0.212 1.212 13 H -0.209 1.209 14 N -0.345 5.345 15 C 0.287 3.713 16 O -0.475 6.475 17 C -0.163 4.163 18 H 0.156 0.844 19 C -0.176 4.176 20 C -0.029 4.029 21 O -0.325 6.325 22 C -0.017 4.017 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.228 0.772 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.894 -7.505 -6.483 11.537 hybrid contribution 1.170 0.206 0.347 1.237 sum -4.724 -7.299 -6.136 10.642 Atomic orbital electron populations 1.21740 0.95957 1.00578 0.99627 1.21433 0.94533 0.96889 0.98727 1.21572 1.01337 0.95210 0.99868 1.18665 0.92918 0.79120 0.93279 0.96336 1.21464 0.91411 1.50981 0.92817 0.91340 1.25906 1.02890 0.93632 0.95338 1.70182 1.37681 1.48907 0.98092 0.85509 0.79973 0.77377 0.78779 1.17979 1.21154 1.20943 1.47027 1.15079 1.11748 1.60665 1.20867 0.82311 0.90883 0.77279 1.90597 1.56109 1.52050 1.48774 1.22832 0.97337 0.92489 1.03684 0.84408 1.23065 0.95568 0.98585 1.00334 1.23803 0.82846 0.96799 0.99448 1.88848 1.20164 1.84967 1.38565 1.23146 0.93479 0.96461 0.88573 0.95477 0.92567 0.93940 0.91807 0.92542 0.91857 0.95461 0.92952 0.77189 0.92212 0.87472 0.88978 0.87956 0.88365 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 7.74 71.98 0.56 -4.27 16 2 C -0.10 -3.99 2.69 -10.79 -0.03 -4.02 16 3 C -0.12 -4.80 8.94 71.98 0.64 -4.15 16 4 C 0.26 12.83 1.91 44.25 0.08 12.91 16 5 H 0.02 1.12 6.84 -2.39 -0.02 1.11 16 6 C -0.53 -26.73 7.11 25.60 0.18 -26.54 16 7 H 0.07 3.31 7.82 -2.91 -0.02 3.28 16 8 C 0.02 1.30 5.45 84.66 0.46 1.76 16 9 N -0.91 -53.12 12.86 21.45 0.28 -52.85 16 10 Si 0.96 41.60 29.54 68.60 2.03 43.62 16 11 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 12 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 14 N -0.70 -29.81 4.82 -446.08 -2.15 -31.96 16 15 C 0.50 20.80 5.41 87.66 0.47 21.28 16 16 O -0.59 -29.54 12.60 -3.05 -0.04 -29.57 16 17 C -0.14 -4.25 3.44 -10.55 -0.04 -4.29 16 18 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 19 C -0.14 -3.81 6.50 31.90 0.21 -3.60 16 20 C 0.05 1.11 7.72 72.66 0.56 1.67 16 21 O -0.41 -13.22 11.52 -148.98 -1.72 -14.94 16 22 C 0.06 1.85 7.29 72.35 0.53 2.38 16 23 H 0.03 1.20 7.66 -2.39 -0.02 1.18 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.68 5.72 -2.39 -0.01 1.67 16 26 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 27 H 0.06 2.29 7.11 -2.39 -0.02 2.27 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.39 14.87 8.57 -92.71 -0.79 14.07 16 32 H 0.06 2.12 6.93 -2.39 -0.02 2.10 16 33 H 0.11 2.29 8.14 -2.39 -0.02 2.28 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 37 H 0.06 2.23 7.59 -2.39 -0.02 2.21 16 Total: -1.00 -67.45 296.71 2.29 -65.17 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.26 Total: 27.40 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 3.63 Total: -6.88 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -1.87 Total: -84.80 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -1.75 Total: -44.51 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -67.45 2.29 -65.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.029 kcal (2) G-P(sol) polarization free energy of solvation -67.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds