Wall clock time and date at job start Mon Mar 30 2020 03:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48505 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47290 * 300.00141 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99944 * 3 2 1 7 7 C 1.37885 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99781 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46972 * 180.02562 * 10 9 7 12 12 O 1.20763 * 119.99937 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99878 * 180.27426 * 11 10 9 14 14 C 1.53003 * 109.46878 * 179.72241 * 13 11 10 15 15 N 1.46901 * 109.46635 * 180.02562 * 14 13 11 16 16 C 1.47020 * 110.99799 * 293.63085 * 15 14 13 17 17 C 1.53094 * 109.25496 * 177.61145 * 16 15 14 18 18 O 1.43021 * 109.25964 * 56.85002 * 17 16 15 19 19 C 1.43009 * 113.73869 * 301.32429 * 18 17 16 20 20 C 1.47012 * 110.99871 * 169.99973 * 15 14 13 21 21 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47355 * 59.99411 * 9 7 2 23 23 H 1.09006 * 109.46629 * 299.99628 * 9 7 2 24 24 H 1.08994 * 109.47515 * 59.99783 * 10 9 7 25 25 H 1.09006 * 109.46938 * 299.99191 * 10 9 7 26 26 H 1.09004 * 109.46965 * 299.72098 * 13 11 10 27 27 H 1.08994 * 109.46990 * 59.71952 * 13 11 10 28 28 H 1.08998 * 109.46943 * 299.99345 * 14 13 11 29 29 H 1.08994 * 109.47116 * 59.99734 * 14 13 11 30 30 H 1.09000 * 109.50528 * 297.54704 * 16 15 14 31 31 H 1.08996 * 109.50472 * 57.67913 * 16 15 14 32 32 H 1.09001 * 109.50857 * 296.91203 * 17 16 15 33 33 H 1.09001 * 109.54077 * 176.80293 * 17 16 15 34 34 H 1.08998 * 109.51024 * 298.73883 * 19 18 17 35 35 H 1.08996 * 109.54490 * 178.62427 * 19 18 17 36 36 H 1.09003 * 109.50542 * 302.32454 * 20 15 14 37 37 H 1.09001 * 109.50907 * 62.40699 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4916 -4.9672 -0.0033 12 8 0.2840 -4.9671 -0.0041 13 6 2.2451 -6.2723 0.0029 14 6 1.2508 -7.4352 0.0066 15 7 1.9853 -8.7074 0.0131 16 6 2.7269 -8.8940 -1.2425 17 6 3.5232 -10.1995 -1.1693 18 8 2.6288 -11.2832 -0.9025 19 6 1.8906 -11.1345 0.3133 20 6 1.0778 -9.8384 0.2551 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5563 -0.8919 23 1 0.6240 -2.5575 0.8881 24 1 2.8712 -3.6048 0.8890 25 1 2.8725 -3.6040 -0.8911 26 1 2.8727 -6.3337 -0.8863 27 1 2.8708 -6.3264 0.8937 28 1 0.6233 -7.3738 0.8957 29 1 0.6251 -7.3810 -0.8843 30 1 2.0258 -8.9415 -2.0757 31 1 3.4111 -8.0582 -1.3888 32 1 4.2612 -10.1315 -0.3700 33 1 4.0299 -10.3712 -2.1189 34 1 2.5811 -11.0936 1.1557 35 1 1.2161 -11.9818 0.4363 36 1 0.5581 -9.6919 1.2020 37 1 0.3498 -9.9005 -0.5537 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259963332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:03 Heat of formation + Delta-G solvation = -92.900880 kcal Electronic energy + Delta-G solvation = -17014.261938 eV Core-core repulsion = 14177.293533 eV Total energy + Delta-G solvation = -2836.968405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.88274 -38.90316 -36.11262 -33.50271 -31.79894 -31.31647 -30.78994 -27.45074 -25.61284 -24.27981 -22.96874 -21.04010 -20.47604 -18.79077 -16.96010 -16.41749 -16.32392 -15.72094 -15.31112 -15.26489 -14.85923 -14.71545 -14.47349 -13.77308 -13.55755 -13.30136 -12.56893 -12.24102 -12.09426 -12.06402 -11.64637 -11.48448 -11.12234 -10.97672 -10.96273 -10.71601 -10.59078 -9.98062 -9.93627 -9.74656 -9.15940 -8.78235 -8.59644 -8.35482 -5.98919 -4.03162 2.55921 3.30853 3.38039 3.41423 3.46300 3.64296 4.42740 4.57163 4.67724 4.74152 4.81146 4.89861 5.01030 5.14249 5.15343 5.27955 5.36188 5.36895 5.52166 5.57357 5.62389 5.69536 5.86595 5.93378 6.06945 6.24226 6.32369 6.73299 6.75214 6.87335 6.96485 7.70057 7.80579 8.02295 8.10869 8.40706 9.05097 9.60816 11.12110 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.067909 B = 0.003508 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.218286 B = 7980.583575 C = 8250.237631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.161 4.161 11 C 0.351 3.649 12 O -0.455 6.455 13 C -0.170 4.170 14 C 0.064 3.936 15 N -0.538 5.538 16 C 0.011 3.989 17 C 0.064 3.936 18 O -0.388 6.388 19 C 0.065 3.935 20 C 0.016 3.984 21 H 0.260 0.740 22 H 0.021 0.979 23 H 0.021 0.979 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.616 -20.519 -0.433 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.199 4.199 11 C 0.226 3.774 12 O -0.328 6.328 13 C -0.208 4.208 14 C -0.064 4.064 15 N -0.264 5.264 16 C -0.117 4.117 17 C -0.013 4.013 18 O -0.307 6.307 19 C -0.013 4.013 20 C -0.112 4.112 21 H 0.070 0.930 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.130 -20.553 -0.171 21.449 hybrid contribution -0.040 1.252 -0.487 1.344 sum 6.090 -19.302 -0.658 20.250 Atomic orbital electron populations 1.70003 1.06085 1.26501 1.50392 1.25047 0.94842 0.99316 0.95293 0.86529 0.80038 0.83774 0.77597 1.19708 1.21015 1.20994 1.21276 0.93002 0.91023 1.51128 0.92514 1.18949 0.93401 0.90134 0.98267 1.22204 1.01086 0.93846 1.02732 1.24965 0.89883 0.92312 0.70273 1.90365 1.17045 1.90056 1.35376 1.22179 1.00008 0.93862 1.04765 1.21936 0.94977 0.87205 1.02240 1.62243 1.27825 1.02295 1.34002 1.22875 0.98466 0.99282 0.91061 1.22676 0.91583 0.85294 1.01742 1.87972 1.56942 1.44049 1.41720 1.22662 0.94730 0.96650 0.87212 1.22783 0.94868 0.91386 1.02141 0.93003 0.96102 0.96051 0.89737 0.89882 0.89002 0.87962 0.89964 0.93989 0.93849 0.89124 0.92184 0.88477 0.92218 0.88519 0.89465 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.79 4.26 -27.88 -0.12 0.67 16 10 C -0.16 -3.19 5.57 -27.88 -0.16 -3.34 16 11 C 0.35 6.25 7.16 -29.03 -0.21 6.04 16 12 O -0.46 -9.86 15.61 6.00 0.09 -9.77 16 13 C -0.17 -2.19 5.57 -27.88 -0.16 -2.34 16 14 C 0.06 0.82 4.25 -3.82 -0.02 0.80 16 15 N -0.54 -5.96 4.73 -234.30 -1.11 -7.07 16 16 C 0.01 0.11 5.44 -3.71 -0.02 0.09 16 17 C 0.06 0.57 7.01 37.21 0.26 0.83 16 18 O -0.39 -4.13 10.83 -35.23 -0.38 -4.51 16 19 C 0.06 0.57 7.01 37.21 0.26 0.83 16 20 C 0.02 0.16 5.64 -3.71 -0.02 0.14 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.02 0.60 8.10 -51.93 -0.42 0.18 16 23 H 0.02 0.62 8.10 -51.93 -0.42 0.20 16 24 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 25 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.09 1.02 6.52 -51.93 -0.34 0.68 16 27 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.11 7.99 -51.93 -0.42 0.70 16 29 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.81 6.38 -51.93 -0.33 0.47 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 304.37 15.07 4.59 4.59 Total: -1.00 -33.11 304.37 -7.79 -40.90 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -6.11 Total: -4.09 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -0.58 Total: -9.98 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: -0.37 Total: -33.76 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.29 Total: -14.28 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.11 -7.79 -40.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.005 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds