Wall clock time and date at job start Mon Mar 30 2020 03:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48505 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47290 * 300.00141 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99944 * 3 2 1 7 7 C 1.37885 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99781 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46972 * 180.02562 * 10 9 7 12 12 O 1.20763 * 119.99937 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99878 * 180.27426 * 11 10 9 14 14 C 1.53003 * 109.46878 * 179.72241 * 13 11 10 15 15 N 1.46901 * 109.46635 * 180.02562 * 14 13 11 16 16 C 1.47020 * 110.99799 * 293.63085 * 15 14 13 17 17 C 1.53094 * 109.25496 * 177.61145 * 16 15 14 18 18 O 1.43021 * 109.25964 * 56.85002 * 17 16 15 19 19 C 1.43009 * 113.73869 * 301.32429 * 18 17 16 20 20 C 1.47012 * 110.99871 * 169.99973 * 15 14 13 21 21 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47355 * 59.99411 * 9 7 2 23 23 H 1.09006 * 109.46629 * 299.99628 * 9 7 2 24 24 H 1.08994 * 109.47515 * 59.99783 * 10 9 7 25 25 H 1.09006 * 109.46938 * 299.99191 * 10 9 7 26 26 H 1.09004 * 109.46965 * 299.72098 * 13 11 10 27 27 H 1.08994 * 109.46990 * 59.71952 * 13 11 10 28 28 H 1.08998 * 109.46943 * 299.99345 * 14 13 11 29 29 H 1.08994 * 109.47116 * 59.99734 * 14 13 11 30 30 H 1.09000 * 109.50528 * 297.54704 * 16 15 14 31 31 H 1.08996 * 109.50472 * 57.67913 * 16 15 14 32 32 H 1.09001 * 109.50857 * 296.91203 * 17 16 15 33 33 H 1.09001 * 109.54077 * 176.80293 * 17 16 15 34 34 H 1.08998 * 109.51024 * 298.73883 * 19 18 17 35 35 H 1.08996 * 109.54490 * 178.62427 * 19 18 17 36 36 H 1.09003 * 109.50542 * 302.32454 * 20 15 14 37 37 H 1.09001 * 109.50907 * 62.40699 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4916 -4.9672 -0.0033 12 8 0.2840 -4.9671 -0.0041 13 6 2.2451 -6.2723 0.0029 14 6 1.2508 -7.4352 0.0066 15 7 1.9853 -8.7074 0.0131 16 6 2.7269 -8.8940 -1.2425 17 6 3.5232 -10.1995 -1.1693 18 8 2.6288 -11.2832 -0.9025 19 6 1.8906 -11.1345 0.3133 20 6 1.0778 -9.8384 0.2551 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5563 -0.8919 23 1 0.6240 -2.5575 0.8881 24 1 2.8712 -3.6048 0.8890 25 1 2.8725 -3.6040 -0.8911 26 1 2.8727 -6.3337 -0.8863 27 1 2.8708 -6.3264 0.8937 28 1 0.6233 -7.3738 0.8957 29 1 0.6251 -7.3810 -0.8843 30 1 2.0258 -8.9415 -2.0757 31 1 3.4111 -8.0582 -1.3888 32 1 4.2612 -10.1315 -0.3700 33 1 4.0299 -10.3712 -2.1189 34 1 2.5811 -11.0936 1.1557 35 1 1.2161 -11.9818 0.4363 36 1 0.5581 -9.6919 1.2020 37 1 0.3498 -9.9005 -0.5537 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259963332.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:02 Heat of formation + Delta-G solvation = -116.592982 kcal Electronic energy + Delta-G solvation = -17015.289304 eV Core-core repulsion = 14177.293533 eV Total energy + Delta-G solvation = -2837.995771 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.87412 -40.18175 -37.00578 -35.59343 -33.22417 -32.47030 -31.97554 -28.69494 -27.24243 -25.01499 -24.43607 -22.54721 -21.32815 -20.25844 -18.64063 -17.65065 -17.20818 -16.81914 -16.62765 -16.32785 -16.07836 -15.98137 -15.84450 -15.10691 -14.73832 -14.50548 -14.17181 -13.74873 -13.32850 -13.13521 -12.98280 -12.85494 -12.50426 -12.42511 -12.31497 -11.94203 -11.83134 -11.66955 -11.46908 -11.30327 -10.69697 -10.59429 -10.33137 -9.49179 -8.20325 -6.34179 1.13057 1.41033 1.42055 1.55586 2.39899 2.57573 2.96123 3.12701 3.39579 3.79159 3.93802 3.96634 4.09197 4.19775 4.29252 4.34081 4.41338 4.51890 4.58682 4.61838 4.72014 4.78107 4.82263 4.89062 4.92100 4.97034 5.03978 5.21760 5.47801 5.61938 5.82836 5.84648 5.91369 6.16601 6.18378 6.71226 6.86900 7.36370 8.92312 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.067909 B = 0.003508 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.218286 B = 7980.583575 C = 8250.237631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.973 3.027 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.032 3.968 10 C -0.156 4.156 11 C 0.356 3.644 12 O -0.504 6.504 13 C -0.152 4.152 14 C 0.069 3.931 15 N -0.537 5.537 16 C 0.008 3.992 17 C 0.064 3.936 18 O -0.407 6.407 19 C 0.066 3.934 20 C 0.013 3.987 21 H 0.263 0.737 22 H -0.020 1.020 23 H -0.019 1.019 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.127 0.873 28 H 0.070 0.930 29 H 0.023 0.977 30 H 0.031 0.969 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.465 -21.087 -0.335 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.797 3.203 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.093 0.907 9 C -0.005 4.005 10 C -0.193 4.193 11 C 0.234 3.766 12 O -0.381 6.381 13 C -0.189 4.189 14 C -0.059 4.059 15 N -0.262 5.262 16 C -0.120 4.120 17 C -0.013 4.013 18 O -0.326 6.326 19 C -0.011 4.011 20 C -0.115 4.115 21 H 0.071 0.929 22 H -0.001 1.001 23 H -0.001 1.001 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.138 0.862 27 H 0.145 0.855 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.123 0.877 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 9.014 -21.147 -0.072 22.988 hybrid contribution -0.961 1.397 -0.521 1.773 sum 8.053 -19.750 -0.593 21.337 Atomic orbital electron populations 1.70174 1.08297 1.27742 1.51674 1.26157 0.95750 1.04012 0.94682 0.85276 0.79335 0.78100 0.77562 1.17598 1.20643 1.20613 1.21784 0.94008 0.91777 1.50479 0.90698 1.18790 0.94046 0.93246 0.94451 1.22110 0.99867 0.92327 1.05033 1.25308 0.89186 0.93715 0.68359 1.90369 1.19195 1.90695 1.37859 1.22046 0.99489 0.90230 1.07152 1.21794 0.94843 0.88438 1.00849 1.62274 1.27578 1.01692 1.34654 1.22989 0.98403 1.00602 0.90004 1.22806 0.91260 0.84209 1.03027 1.87951 1.57387 1.44822 1.42480 1.22762 0.94907 0.96499 0.86898 1.22872 0.94861 0.91693 1.02071 0.92871 1.00117 1.00052 0.87355 0.87447 0.86183 0.85463 0.91166 0.95916 0.95040 0.87697 0.91382 0.86739 0.91505 0.86810 0.88789 0.95009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.50 13.29 21.45 0.28 -59.21 16 2 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 3 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 4 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 8 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.03 1.75 4.26 29.85 0.13 1.88 16 10 C -0.16 -6.01 5.57 29.85 0.17 -5.84 16 11 C 0.36 12.51 7.16 29.10 0.21 12.72 16 12 O -0.50 -22.69 15.61 -1.46 -0.02 -22.71 16 13 C -0.15 -3.52 5.57 29.85 0.17 -3.36 16 14 C 0.07 1.70 4.25 86.30 0.37 2.07 16 15 N -0.54 -10.93 4.73 -895.20 -4.23 -15.17 16 16 C 0.01 0.14 5.44 86.31 0.47 0.61 16 17 C 0.06 0.97 7.01 72.01 0.50 1.48 16 18 O -0.41 -7.89 10.83 -148.98 -1.61 -9.50 16 19 C 0.07 1.04 7.01 72.02 0.50 1.54 16 20 C 0.01 0.24 5.64 86.32 0.49 0.73 16 21 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 22 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 23 H -0.02 -1.18 8.10 -2.38 -0.02 -1.19 16 24 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 25 H 0.11 3.62 8.14 -2.38 -0.02 3.60 16 26 H 0.12 2.19 6.52 -2.38 -0.02 2.18 16 27 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.07 1.90 7.99 -2.39 -0.02 1.88 16 29 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 30 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 1.51 6.38 -2.39 -0.02 1.50 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 37 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -74.43 304.37 1.17 -73.26 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.03 Total: 5.89 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 3.70 Total: -18.85 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -3.95 Total: -74.38 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.64 Total: -32.21 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -74.43 1.17 -73.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963332.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.333 kcal (2) G-P(sol) polarization free energy of solvation -74.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds