Wall clock time and date at job start Mon Mar 30 2020 04:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47184 * 2 1 4 4 C 1.52994 * 109.47051 * 119.99811 * 2 1 3 5 5 H 1.09010 * 109.47216 * 185.51758 * 4 2 1 6 6 C 1.50700 * 109.47451 * 65.51565 * 4 2 1 7 7 H 1.07997 * 120.00275 * 245.46461 * 6 4 2 8 8 C 1.37882 * 119.99814 * 65.45997 * 6 4 2 9 9 N 1.31516 * 119.99652 * 9.41489 * 8 6 4 10 10 Si 1.86794 * 119.99930 * 189.41595 * 8 6 4 11 11 H 1.48507 * 109.47244 * 84.99580 * 10 8 6 12 12 H 1.48499 * 109.47351 * 204.99132 * 10 8 6 13 13 H 1.48499 * 109.47332 * 324.99756 * 10 8 6 14 14 N 1.46499 * 109.47262 * 305.51596 * 4 2 1 15 15 C 1.34779 * 119.99978 * 274.99620 * 14 4 2 16 16 O 1.21273 * 120.00207 * 0.02562 * 15 14 4 17 17 C 1.50705 * 120.00155 * 179.97438 * 15 14 4 18 18 H 1.08995 * 110.32849 * 55.70229 * 17 15 14 19 19 C 1.54488 * 110.37127 * 293.45561 * 17 15 14 20 20 C 1.54503 * 104.06051 * 217.18566 * 19 17 15 21 21 C 1.54480 * 104.06637 * 0.02562 * 20 19 17 22 22 O 1.44419 * 110.37568 * 177.95483 * 17 15 14 23 23 H 1.08998 * 109.47504 * 300.00239 * 1 2 3 24 24 H 1.09000 * 109.46808 * 59.99990 * 1 2 3 25 25 H 1.09001 * 109.47221 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47504 * 239.99761 * 2 1 3 27 27 H 1.09004 * 109.46605 * 300.00047 * 3 2 1 28 28 H 1.09007 * 109.46864 * 59.99637 * 3 2 1 29 29 H 1.08994 * 109.47226 * 179.97438 * 3 2 1 30 30 H 0.97000 * 119.99562 * 180.02562 * 9 8 6 31 31 H 0.96999 * 120.00156 * 94.99899 * 14 4 2 32 32 H 1.08999 * 110.50822 * 335.83231 * 19 17 15 33 33 H 1.09001 * 110.50868 * 98.54484 * 19 17 15 34 34 H 1.09006 * 110.50875 * 118.64178 * 20 19 17 35 35 H 1.08998 * 110.51514 * 241.35519 * 20 19 17 36 36 H 1.08997 * 110.37527 * 142.80649 * 21 20 19 37 37 H 1.08999 * 110.37013 * 265.14434 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 3.1256 -0.6364 1.3000 6 6 1.6523 -2.1760 1.1830 7 1 0.9559 -2.5825 1.9014 8 6 2.1865 -2.9879 0.2050 9 7 3.1681 -2.5475 -0.5514 10 14 1.5160 -4.7132 -0.0456 11 1 0.3304 -4.6588 -0.9383 12 1 2.5625 -5.5661 -0.6643 13 1 1.1218 -5.2866 1.2663 14 7 1.4462 -0.1115 2.4417 15 6 2.0150 0.9775 2.9959 16 8 3.0179 1.4530 2.5073 17 6 1.4039 1.6051 4.2223 18 1 1.3090 0.8666 5.0183 19 6 0.0241 2.2124 3.8849 20 6 -0.0346 3.5040 4.7308 21 6 1.3169 3.5246 5.4787 22 8 2.2031 2.7230 4.6663 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 3.5437 -3.1186 -1.2397 31 1 0.6439 -0.4915 2.8324 32 1 -0.0399 2.4483 2.8226 33 1 -0.7748 1.5297 4.1743 34 1 -0.1276 4.3784 4.0867 35 1 -0.8625 3.4598 5.4384 36 1 1.6917 4.5451 5.5571 37 1 1.2093 3.0819 6.4689 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:08 Heat of formation + Delta-G solvation = -96.392109 kcal Electronic energy + Delta-G solvation = -18439.694121 eV Core-core repulsion = 15602.574325 eV Total energy + Delta-G solvation = -2837.119796 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.87129 -38.13030 -35.51854 -32.59087 -32.09802 -31.74997 -29.45230 -26.87556 -26.01558 -23.82893 -22.52170 -21.47566 -19.94868 -18.49457 -17.48207 -16.49485 -15.91115 -15.53290 -14.85148 -14.58086 -14.47951 -13.89514 -13.68110 -12.96107 -12.78689 -12.48026 -12.35379 -11.77125 -11.56829 -11.38157 -11.30915 -11.13667 -11.01314 -10.90206 -10.74105 -10.33803 -10.17773 -9.94313 -9.81773 -9.56164 -9.04097 -8.80073 -8.46832 -7.78847 -6.13587 -4.18095 3.24879 3.31362 3.32750 3.37388 3.63787 4.29736 4.41769 4.63092 4.82190 4.97703 5.18405 5.19637 5.24310 5.57440 5.60222 5.65863 5.74940 5.91016 6.02437 6.21707 6.24310 6.33542 6.57460 6.78062 6.80537 6.92190 7.07055 7.32210 7.42546 7.45332 7.63101 7.71827 7.85849 8.09844 8.68271 8.81334 9.16515 9.47072 10.94675 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035977 B = 0.006505 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.080977 B = 4303.270219 C = 4415.178504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.098 4.098 3 C -0.134 4.134 4 C 0.276 3.724 5 H 0.055 0.945 6 C -0.532 4.532 7 H 0.061 0.939 8 C 0.070 3.930 9 N -0.879 5.879 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.275 1.275 14 N -0.703 5.703 15 C 0.506 3.494 16 O -0.528 6.528 17 C 0.054 3.946 18 H 0.087 0.913 19 C -0.144 4.144 20 C -0.153 4.153 21 C 0.040 3.960 22 O -0.344 6.344 23 H 0.033 0.967 24 H 0.026 0.974 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.023 0.977 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.547 7.838 8.473 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.118 4.118 3 C -0.191 4.191 4 C 0.174 3.826 5 H 0.073 0.927 6 C -0.570 4.570 7 H 0.079 0.921 8 C -0.134 4.134 9 N -0.516 5.516 10 Si 0.722 3.278 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.200 1.200 14 N -0.353 5.353 15 C 0.289 3.711 16 O -0.405 6.405 17 C -0.008 4.008 18 H 0.104 0.896 19 C -0.182 4.182 20 C -0.191 4.191 21 C -0.037 4.037 22 O -0.262 6.262 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.435 8.158 7.890 13.568 hybrid contribution -1.002 -1.164 0.062 1.537 sum -8.437 6.994 7.952 13.541 Atomic orbital electron populations 1.21653 0.97400 1.01020 0.98400 1.21455 0.94038 0.94135 1.02168 1.21897 1.01086 0.97445 0.98680 1.18781 0.95025 0.90349 0.78403 0.92674 1.21111 1.27669 0.93321 1.14939 0.92128 1.24863 0.94240 0.98345 0.95937 1.69982 1.23052 1.37349 1.21191 0.86571 0.78769 0.83979 0.78449 1.20441 1.21219 1.19955 1.46353 1.29678 1.28140 1.31108 1.19918 0.85098 0.81582 0.84519 1.90693 1.24846 1.62106 1.62824 1.22980 0.90540 0.90762 0.96470 0.89552 1.22900 0.96275 0.97045 1.01971 1.22932 0.98256 0.98560 0.99314 1.23462 0.89489 0.96567 0.94165 1.89305 1.33166 1.35981 1.67762 0.94757 0.95442 0.92274 0.89516 0.95769 0.93885 0.93065 0.92562 0.78074 0.89992 0.89819 0.90568 0.90465 0.89029 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.79 37.16 0.33 -2.21 16 2 C -0.10 -2.27 2.64 -90.62 -0.24 -2.51 16 3 C -0.13 -2.98 7.81 37.16 0.29 -2.69 16 4 C 0.28 6.77 1.80 -69.09 -0.12 6.65 16 5 H 0.06 1.62 7.52 -51.92 -0.39 1.23 16 6 C -0.53 -13.62 7.66 -34.44 -0.26 -13.88 16 7 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 8 C 0.07 1.85 5.15 -17.82 -0.09 1.76 16 9 N -0.88 -24.64 12.16 55.43 0.67 -23.97 16 10 Si 0.89 20.34 29.55 -169.99 -5.02 15.32 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 N -0.70 -14.21 4.02 -54.93 -0.22 -14.43 16 15 C 0.51 10.28 5.67 -10.98 -0.06 10.22 16 16 O -0.53 -13.09 13.69 -13.65 -0.19 -13.28 16 17 C 0.05 0.84 3.71 -27.10 -0.10 0.74 16 18 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 19 C -0.14 -1.75 6.62 -25.16 -0.17 -1.92 16 20 C -0.15 -1.54 7.09 -25.17 -0.18 -1.71 16 21 C 0.04 0.46 7.63 37.93 0.29 0.75 16 22 O -0.34 -5.84 10.92 -54.44 -0.59 -6.44 16 23 H 0.03 0.61 7.46 -51.93 -0.39 0.22 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 1.22 7.40 -51.93 -0.38 0.83 16 26 H 0.09 2.27 6.79 -51.93 -0.35 1.91 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.94 5.63 -51.93 -0.29 0.65 16 29 H 0.05 1.24 7.88 -51.93 -0.41 0.83 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.39 6.70 8.53 -40.82 -0.35 6.36 16 32 H 0.08 1.12 7.86 -51.93 -0.41 0.72 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 296.48 15.07 4.47 4.47 Total: -1.00 -30.86 296.48 -7.10 -37.96 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.90 Total: 5.18 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.32 Total: -4.81 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.45 Total: -38.40 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.78 Total: -19.72 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.86 -7.10 -37.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.434 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds