Wall clock time and date at job start Mon Mar 30 2020 04:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47184 * 2 1 4 4 C 1.52994 * 109.47051 * 119.99811 * 2 1 3 5 5 H 1.09010 * 109.47216 * 185.51758 * 4 2 1 6 6 C 1.50700 * 109.47451 * 65.51565 * 4 2 1 7 7 H 1.07997 * 120.00275 * 245.46461 * 6 4 2 8 8 C 1.37882 * 119.99814 * 65.45997 * 6 4 2 9 9 N 1.31516 * 119.99652 * 9.41489 * 8 6 4 10 10 Si 1.86794 * 119.99930 * 189.41595 * 8 6 4 11 11 H 1.48507 * 109.47244 * 84.99580 * 10 8 6 12 12 H 1.48499 * 109.47351 * 204.99132 * 10 8 6 13 13 H 1.48499 * 109.47332 * 324.99756 * 10 8 6 14 14 N 1.46499 * 109.47262 * 305.51596 * 4 2 1 15 15 C 1.34779 * 119.99978 * 274.99620 * 14 4 2 16 16 O 1.21273 * 120.00207 * 0.02562 * 15 14 4 17 17 C 1.50705 * 120.00155 * 179.97438 * 15 14 4 18 18 H 1.08995 * 110.32849 * 55.70229 * 17 15 14 19 19 C 1.54488 * 110.37127 * 293.45561 * 17 15 14 20 20 C 1.54503 * 104.06051 * 217.18566 * 19 17 15 21 21 C 1.54480 * 104.06637 * 0.02562 * 20 19 17 22 22 O 1.44419 * 110.37568 * 177.95483 * 17 15 14 23 23 H 1.08998 * 109.47504 * 300.00239 * 1 2 3 24 24 H 1.09000 * 109.46808 * 59.99990 * 1 2 3 25 25 H 1.09001 * 109.47221 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47504 * 239.99761 * 2 1 3 27 27 H 1.09004 * 109.46605 * 300.00047 * 3 2 1 28 28 H 1.09007 * 109.46864 * 59.99637 * 3 2 1 29 29 H 1.08994 * 109.47226 * 179.97438 * 3 2 1 30 30 H 0.97000 * 119.99562 * 180.02562 * 9 8 6 31 31 H 0.96999 * 120.00156 * 94.99899 * 14 4 2 32 32 H 1.08999 * 110.50822 * 335.83231 * 19 17 15 33 33 H 1.09001 * 110.50868 * 98.54484 * 19 17 15 34 34 H 1.09006 * 110.50875 * 118.64178 * 20 19 17 35 35 H 1.08998 * 110.51514 * 241.35519 * 20 19 17 36 36 H 1.08997 * 110.37527 * 142.80649 * 21 20 19 37 37 H 1.08999 * 110.37013 * 265.14434 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 3.1256 -0.6364 1.3000 6 6 1.6523 -2.1760 1.1830 7 1 0.9559 -2.5825 1.9014 8 6 2.1865 -2.9879 0.2050 9 7 3.1681 -2.5475 -0.5514 10 14 1.5160 -4.7132 -0.0456 11 1 0.3304 -4.6588 -0.9383 12 1 2.5625 -5.5661 -0.6643 13 1 1.1218 -5.2866 1.2663 14 7 1.4462 -0.1115 2.4417 15 6 2.0150 0.9775 2.9959 16 8 3.0179 1.4530 2.5073 17 6 1.4039 1.6051 4.2223 18 1 1.3090 0.8666 5.0183 19 6 0.0241 2.2124 3.8849 20 6 -0.0346 3.5040 4.7308 21 6 1.3169 3.5246 5.4787 22 8 2.2031 2.7230 4.6663 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 3.5437 -3.1186 -1.2397 31 1 0.6439 -0.4915 2.8324 32 1 -0.0399 2.4483 2.8226 33 1 -0.7748 1.5297 4.1743 34 1 -0.1276 4.3784 4.0867 35 1 -0.8625 3.4598 5.4384 36 1 1.6917 4.5451 5.5571 37 1 1.2093 3.0819 6.4689 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966628.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:08 Heat of formation + Delta-G solvation = -117.149614 kcal Electronic energy + Delta-G solvation = -18440.594234 eV Core-core repulsion = 15602.574325 eV Total energy + Delta-G solvation = -2838.019909 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.26196 -39.54607 -37.34311 -34.34666 -33.91138 -32.91156 -30.66405 -28.73233 -27.72899 -25.28541 -24.16060 -22.40744 -21.51931 -20.32272 -19.07778 -17.90338 -17.35157 -17.03160 -16.47592 -16.19688 -15.88567 -15.45869 -14.70829 -14.52181 -14.43533 -14.24198 -14.06601 -13.28347 -12.93663 -12.85696 -12.73893 -12.65234 -12.62870 -12.20973 -12.19903 -11.97375 -11.76474 -11.63474 -11.39381 -10.98462 -10.91006 -10.51536 -10.39349 -9.59599 -8.15935 -6.27626 1.46082 1.46702 1.55963 1.80978 2.23666 2.48055 3.16245 3.23551 3.62683 3.84867 3.96850 4.19195 4.28259 4.40982 4.44371 4.46032 4.53569 4.72686 4.84714 4.89010 4.95441 5.01082 5.07046 5.12693 5.17810 5.27856 5.41557 5.54772 5.64833 5.69790 5.78204 5.80677 6.00904 6.13131 6.80189 7.00975 7.37343 7.60860 8.93037 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035977 B = 0.006505 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.080977 B = 4303.270219 C = 4415.178504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.096 4.096 3 C -0.120 4.120 4 C 0.284 3.716 5 H -0.008 1.008 6 C -0.537 4.537 7 H 0.075 0.925 8 C 0.018 3.982 9 N -0.919 5.919 10 Si 0.963 3.037 11 H -0.269 1.269 12 H -0.293 1.293 13 H -0.263 1.263 14 N -0.694 5.694 15 C 0.498 3.502 16 O -0.582 6.582 17 C 0.059 3.941 18 H 0.114 0.886 19 C -0.140 4.140 20 C -0.144 4.144 21 C 0.031 3.969 22 O -0.389 6.389 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.016 0.984 30 H 0.263 0.737 31 H 0.405 0.595 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.737 7.859 10.085 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.116 4.116 3 C -0.178 4.178 4 C 0.181 3.819 5 H 0.010 0.990 6 C -0.575 4.575 7 H 0.093 0.907 8 C -0.182 4.182 9 N -0.558 5.558 10 Si 0.788 3.212 11 H -0.194 1.194 12 H -0.219 1.219 13 H -0.187 1.187 14 N -0.344 5.344 15 C 0.284 3.716 16 O -0.463 6.463 17 C -0.002 4.002 18 H 0.131 0.869 19 C -0.178 4.178 20 C -0.182 4.182 21 C -0.045 4.045 22 O -0.308 6.308 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.240 0.760 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.094 0.906 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.679 8.181 9.542 16.493 hybrid contribution 0.067 -1.108 -0.388 1.176 sum -10.611 7.073 9.154 15.698 Atomic orbital electron populations 1.21533 0.94174 1.01266 1.00412 1.21319 0.96652 0.93752 0.99883 1.21742 0.98799 0.97385 0.99839 1.18347 0.91799 0.90998 0.80758 0.98958 1.21448 1.27339 0.93797 1.14908 0.90715 1.25735 0.94303 1.02462 0.95740 1.70152 1.24660 1.38932 1.22025 0.85491 0.77957 0.78942 0.78774 1.19446 1.21873 1.18692 1.46079 1.30090 1.28195 1.30083 1.20893 0.84253 0.80870 0.85544 1.90670 1.27306 1.63530 1.64744 1.23006 0.91566 0.91284 0.94345 0.86905 1.22953 0.94776 0.98668 1.01404 1.22940 0.98477 0.97284 0.99465 1.23784 0.89487 0.96574 0.94609 1.89269 1.35581 1.36975 1.68971 0.92520 0.93633 0.92848 0.93026 0.93509 0.93526 0.96511 0.92818 0.75962 0.91828 0.86489 0.90557 0.87013 0.88091 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.44 8.79 71.98 0.63 -3.81 16 2 C -0.10 -4.54 2.64 -10.79 -0.03 -4.57 16 3 C -0.12 -5.50 7.81 71.98 0.56 -4.94 16 4 C 0.28 14.37 1.80 44.24 0.08 14.45 16 5 H -0.01 -0.47 7.52 -2.38 -0.02 -0.49 16 6 C -0.54 -27.58 7.66 25.60 0.20 -27.39 16 7 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 8 C 0.02 0.95 5.15 84.66 0.44 1.38 16 9 N -0.92 -53.56 12.16 21.45 0.26 -53.30 16 10 Si 0.96 41.63 29.55 68.60 2.03 43.65 16 11 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 12 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 14 N -0.69 -27.89 4.02 -446.10 -1.79 -29.68 16 15 C 0.50 20.40 5.67 87.66 0.50 20.90 16 16 O -0.58 -30.22 13.69 15.36 0.21 -30.01 16 17 C 0.06 1.73 3.71 30.36 0.11 1.84 16 18 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 19 C -0.14 -2.94 6.62 31.61 0.21 -2.73 16 20 C -0.14 -2.33 7.09 31.61 0.22 -2.11 16 21 C 0.03 0.63 7.63 72.49 0.55 1.18 16 22 O -0.39 -12.82 10.92 -130.61 -1.43 -14.25 16 23 H 0.06 1.88 7.46 -2.39 -0.02 1.86 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 2.09 7.40 -2.39 -0.02 2.07 16 26 H 0.05 2.80 6.79 -2.39 -0.02 2.79 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 2.07 5.63 -2.38 -0.01 2.05 16 29 H 0.02 0.83 7.88 -2.39 -0.02 0.81 16 30 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.41 13.24 8.53 -92.71 -0.79 12.45 16 32 H 0.06 1.58 7.86 -2.39 -0.02 1.56 16 33 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -71.55 296.48 3.01 -68.54 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.26 Total: 20.81 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 3.47 Total: -5.78 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -1.53 Total: -82.98 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -1.22 Total: -44.25 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -71.55 3.01 -68.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966628.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.609 kcal (2) G-P(sol) polarization free energy of solvation -71.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds