Wall clock time and date at job start Mon Mar 30 2020 04:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47717 * 2 1 4 4 C 1.53005 * 109.46921 * 120.00040 * 2 1 3 5 5 H 1.09001 * 109.46909 * 295.82061 * 4 2 1 6 6 C 1.50697 * 109.47049 * 55.81929 * 4 2 1 7 7 H 1.08008 * 119.99831 * 25.85647 * 6 4 2 8 8 C 1.37873 * 120.00445 * 205.84942 * 6 4 2 9 9 N 1.31520 * 119.99706 * 353.27988 * 8 6 4 10 10 Si 1.86793 * 120.00393 * 173.27981 * 8 6 4 11 11 H 1.48498 * 109.47378 * 269.99874 * 10 8 6 12 12 H 1.48494 * 109.47418 * 30.00083 * 10 8 6 13 13 H 1.48504 * 109.47282 * 150.00132 * 10 8 6 14 14 N 1.46500 * 109.47032 * 175.81817 * 4 2 1 15 15 C 1.34783 * 119.99438 * 85.00318 * 14 4 2 16 16 O 1.21279 * 120.00412 * 359.97438 * 15 14 4 17 17 C 1.50701 * 119.99326 * 179.97438 * 15 14 4 18 18 H 1.08996 * 110.33348 * 55.70181 * 17 15 14 19 19 C 1.54481 * 110.37439 * 293.44579 * 17 15 14 20 20 C 1.54508 * 104.06450 * 217.19784 * 19 17 15 21 21 C 1.54476 * 104.06296 * 359.97438 * 20 19 17 22 22 O 1.44426 * 110.36804 * 177.95033 * 17 15 14 23 23 H 1.08998 * 109.47337 * 294.34153 * 1 2 3 24 24 H 1.09001 * 109.47105 * 54.33361 * 1 2 3 25 25 H 1.08994 * 109.47386 * 174.33542 * 1 2 3 26 26 H 1.08996 * 109.47081 * 239.99856 * 2 1 3 27 27 H 1.08992 * 109.47590 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46800 * 300.00451 * 3 2 1 29 29 H 1.09008 * 109.46702 * 59.99526 * 3 2 1 30 30 H 0.97005 * 119.99945 * 354.25019 * 9 8 6 31 31 H 0.96995 * 120.00495 * 265.00104 * 14 4 2 32 32 H 1.08998 * 110.51080 * 335.84185 * 19 17 15 33 33 H 1.08992 * 110.51090 * 98.54676 * 19 17 15 34 34 H 1.08997 * 110.51684 * 118.64696 * 20 19 17 35 35 H 1.09001 * 110.50569 * 241.35624 * 20 19 17 36 36 H 1.08996 * 110.37284 * 142.81400 * 21 20 19 37 37 H 1.09003 * 110.37642 * 265.03962 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.7390 -0.1660 2.1377 6 6 1.4548 -2.1090 1.3021 7 1 1.1502 -2.6017 0.3905 8 6 1.3084 -2.7498 2.5141 9 7 1.7985 -2.2082 3.6077 10 14 0.4140 -4.3873 2.6028 11 1 -1.0331 -4.1490 2.8357 12 1 0.5955 -5.1204 1.3243 13 1 0.9686 -5.1945 3.7192 14 7 3.5015 -0.8091 1.2000 15 6 4.2535 0.2177 1.6435 16 8 3.7204 1.2144 2.0829 17 6 5.7570 0.1270 1.5934 18 1 6.0900 -0.0842 0.5772 19 6 6.2626 -0.9642 2.5628 20 6 7.5701 -0.3771 3.1400 21 6 7.7001 0.9991 2.4504 22 8 6.3508 1.3534 2.0723 23 1 -0.3634 0.4236 0.9363 24 1 -0.3633 0.5992 -0.8349 25 1 -0.3634 -1.0226 -0.1014 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 2.3343 -1.4015 3.5513 31 1 3.9279 -1.6062 0.8483 32 1 5.5369 -1.1347 3.3580 33 1 6.4647 -1.8899 2.0241 34 1 7.4909 -0.2574 4.2204 35 1 8.4186 -1.0127 2.8864 36 1 8.1052 1.7348 3.1452 37 1 8.3345 0.9227 1.5673 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:12 Heat of formation + Delta-G solvation = -105.153640 kcal Electronic energy + Delta-G solvation = -18434.593570 eV Core-core repulsion = 15597.093845 eV Total energy + Delta-G solvation = -2837.499724 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.75656 -38.07710 -35.56686 -32.77679 -32.34973 -31.63593 -29.32211 -26.77399 -25.80255 -23.68056 -22.50794 -21.34465 -19.64884 -19.14650 -17.60418 -16.51120 -16.13500 -15.56089 -14.82039 -14.37506 -14.25252 -13.82476 -13.61651 -13.35312 -12.85449 -12.57046 -12.11056 -11.63456 -11.57075 -11.46341 -11.24762 -11.22136 -10.92443 -10.80871 -10.63558 -10.33367 -10.18326 -10.10413 -9.79775 -9.66383 -8.95445 -8.65222 -8.55967 -7.70869 -6.53125 -4.33623 3.34720 3.35921 3.45950 3.52831 3.71826 4.38495 4.47434 4.74632 4.93176 5.03433 5.23794 5.26904 5.42238 5.67009 5.68250 5.75573 5.87005 5.90715 5.97927 6.04042 6.13398 6.23928 6.42435 6.63710 6.71511 6.78565 6.87936 7.04503 7.07042 7.22117 7.37386 7.71763 7.91917 8.27937 8.61033 8.80553 9.24800 9.45396 10.83356 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.008443 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.980980 B = 3315.749847 C = 4293.683672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.093 4.093 3 C -0.136 4.136 4 C 0.250 3.750 5 H 0.053 0.947 6 C -0.601 4.601 7 H 0.057 0.943 8 C 0.031 3.969 9 N -0.890 5.890 10 Si 1.069 2.931 11 H -0.285 1.285 12 H -0.287 1.287 13 H -0.285 1.285 14 N -0.703 5.703 15 C 0.502 3.498 16 O -0.539 6.539 17 C 0.053 3.947 18 H 0.083 0.917 19 C -0.143 4.143 20 C -0.153 4.153 21 C 0.041 3.959 22 O -0.346 6.346 23 H 0.046 0.954 24 H 0.031 0.969 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.053 0.947 30 H 0.278 0.722 31 H 0.385 0.615 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.847 0.437 -4.491 9.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.113 4.113 3 C -0.194 4.194 4 C 0.150 3.850 5 H 0.071 0.929 6 C -0.639 4.639 7 H 0.075 0.925 8 C -0.178 4.178 9 N -0.523 5.523 10 Si 0.897 3.103 11 H -0.211 1.211 12 H -0.213 1.213 13 H -0.211 1.211 14 N -0.353 5.353 15 C 0.285 3.715 16 O -0.417 6.417 17 C -0.009 4.009 18 H 0.100 0.900 19 C -0.181 4.181 20 C -0.190 4.190 21 C -0.036 4.036 22 O -0.264 6.264 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.218 0.782 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.786 0.234 -3.096 8.382 hybrid contribution 1.057 0.530 -1.254 1.724 sum 8.844 0.764 -4.350 9.885 Atomic orbital electron populations 1.21603 0.95497 1.01465 0.99633 1.21373 0.95655 0.94812 0.99430 1.21910 1.00818 0.96861 0.99762 1.18983 0.75678 0.96415 0.93887 0.92901 1.22097 1.44873 1.01136 0.95840 0.92493 1.25958 0.96168 1.03512 0.92191 1.70697 1.30359 1.21318 1.29954 0.83552 0.76413 0.74842 0.75535 1.21143 1.21291 1.21098 1.47629 1.09325 1.16667 1.61689 1.20182 0.87404 0.84606 0.79287 1.90652 1.73645 1.31199 1.46167 1.23043 0.94013 0.85593 0.98251 0.89978 1.22876 0.97461 0.98055 0.99699 1.22929 0.97810 0.96772 1.01533 1.23454 0.85405 0.96330 0.98460 1.89299 1.24553 1.28681 1.83844 0.93492 0.95009 0.91916 0.93096 0.93261 0.95224 0.92822 0.91040 0.78187 0.89670 0.89951 0.90535 0.90557 0.89130 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.76 37.16 0.33 -2.18 16 2 C -0.09 -2.00 2.70 -90.62 -0.24 -2.24 16 3 C -0.14 -2.85 7.78 37.16 0.29 -2.56 16 4 C 0.25 6.05 1.32 -69.08 -0.09 5.96 16 5 H 0.05 1.51 6.57 -51.93 -0.34 1.17 16 6 C -0.60 -15.29 7.25 -34.44 -0.25 -15.54 16 7 H 0.06 1.43 7.58 -52.48 -0.40 1.04 16 8 C 0.03 0.81 5.45 -17.82 -0.10 0.71 16 9 N -0.89 -25.56 13.56 55.43 0.75 -24.80 16 10 Si 1.07 23.49 29.91 -169.99 -5.08 18.40 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 14 N -0.70 -15.16 4.96 -54.93 -0.27 -15.43 16 15 C 0.50 10.86 5.60 -10.98 -0.06 10.80 16 16 O -0.54 -13.77 13.69 -13.65 -0.19 -13.96 16 17 C 0.05 0.91 3.70 -27.11 -0.10 0.81 16 18 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.14 -2.13 6.62 -25.16 -0.17 -2.30 16 20 C -0.15 -1.85 7.09 -25.17 -0.18 -2.03 16 21 C 0.04 0.52 7.63 37.93 0.29 0.81 16 22 O -0.35 -6.32 10.92 -54.44 -0.59 -6.91 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 1.28 7.16 -51.93 -0.37 0.91 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 1.07 5.66 -51.93 -0.29 0.77 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 1.21 7.80 -51.92 -0.40 0.80 16 30 H 0.28 8.22 6.94 -40.82 -0.28 7.94 16 31 H 0.39 7.54 8.59 -40.82 -0.35 7.19 16 32 H 0.08 1.51 7.86 -51.93 -0.41 1.10 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 297.85 15.07 4.49 4.49 Total: -1.00 -30.79 297.85 -7.06 -37.85 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.88 Total: 8.12 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.29 Total: -7.76 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.48 Total: -40.24 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.78 Total: -20.87 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.08 Total: 18.40 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.79 -7.06 -37.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.302 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds