Wall clock time and date at job start Mon Mar 30 2020 04:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47717 * 2 1 4 4 C 1.53005 * 109.46921 * 120.00040 * 2 1 3 5 5 H 1.09001 * 109.46909 * 295.82061 * 4 2 1 6 6 C 1.50697 * 109.47049 * 55.81929 * 4 2 1 7 7 H 1.08008 * 119.99831 * 25.85647 * 6 4 2 8 8 C 1.37873 * 120.00445 * 205.84942 * 6 4 2 9 9 N 1.31520 * 119.99706 * 353.27988 * 8 6 4 10 10 Si 1.86793 * 120.00393 * 173.27981 * 8 6 4 11 11 H 1.48498 * 109.47378 * 269.99874 * 10 8 6 12 12 H 1.48494 * 109.47418 * 30.00083 * 10 8 6 13 13 H 1.48504 * 109.47282 * 150.00132 * 10 8 6 14 14 N 1.46500 * 109.47032 * 175.81817 * 4 2 1 15 15 C 1.34783 * 119.99438 * 85.00318 * 14 4 2 16 16 O 1.21279 * 120.00412 * 359.97438 * 15 14 4 17 17 C 1.50701 * 119.99326 * 179.97438 * 15 14 4 18 18 H 1.08996 * 110.33348 * 55.70181 * 17 15 14 19 19 C 1.54481 * 110.37439 * 293.44579 * 17 15 14 20 20 C 1.54508 * 104.06450 * 217.19784 * 19 17 15 21 21 C 1.54476 * 104.06296 * 359.97438 * 20 19 17 22 22 O 1.44426 * 110.36804 * 177.95033 * 17 15 14 23 23 H 1.08998 * 109.47337 * 294.34153 * 1 2 3 24 24 H 1.09001 * 109.47105 * 54.33361 * 1 2 3 25 25 H 1.08994 * 109.47386 * 174.33542 * 1 2 3 26 26 H 1.08996 * 109.47081 * 239.99856 * 2 1 3 27 27 H 1.08992 * 109.47590 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46800 * 300.00451 * 3 2 1 29 29 H 1.09008 * 109.46702 * 59.99526 * 3 2 1 30 30 H 0.97005 * 119.99945 * 354.25019 * 9 8 6 31 31 H 0.96995 * 120.00495 * 265.00104 * 14 4 2 32 32 H 1.08998 * 110.51080 * 335.84185 * 19 17 15 33 33 H 1.08992 * 110.51090 * 98.54676 * 19 17 15 34 34 H 1.08997 * 110.51684 * 118.64696 * 20 19 17 35 35 H 1.09001 * 110.50569 * 241.35624 * 20 19 17 36 36 H 1.08996 * 110.37284 * 142.81400 * 21 20 19 37 37 H 1.09003 * 110.37642 * 265.03962 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.7390 -0.1660 2.1377 6 6 1.4548 -2.1090 1.3021 7 1 1.1502 -2.6017 0.3905 8 6 1.3084 -2.7498 2.5141 9 7 1.7985 -2.2082 3.6077 10 14 0.4140 -4.3873 2.6028 11 1 -1.0331 -4.1490 2.8357 12 1 0.5955 -5.1204 1.3243 13 1 0.9686 -5.1945 3.7192 14 7 3.5015 -0.8091 1.2000 15 6 4.2535 0.2177 1.6435 16 8 3.7204 1.2144 2.0829 17 6 5.7570 0.1270 1.5934 18 1 6.0900 -0.0842 0.5772 19 6 6.2626 -0.9642 2.5628 20 6 7.5701 -0.3771 3.1400 21 6 7.7001 0.9991 2.4504 22 8 6.3508 1.3534 2.0723 23 1 -0.3634 0.4236 0.9363 24 1 -0.3633 0.5992 -0.8349 25 1 -0.3634 -1.0226 -0.1014 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 2.3343 -1.4015 3.5513 31 1 3.9279 -1.6062 0.8483 32 1 5.5369 -1.1347 3.3580 33 1 6.4647 -1.8899 2.0241 34 1 7.4909 -0.2574 4.2204 35 1 8.4186 -1.0127 2.8864 36 1 8.1052 1.7348 3.1452 37 1 8.3345 0.9227 1.5673 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:12 Heat of formation + Delta-G solvation = -125.995725 kcal Electronic energy + Delta-G solvation = -18435.497350 eV Core-core repulsion = 15597.093845 eV Total energy + Delta-G solvation = -2838.403505 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.26774 -39.60492 -37.40380 -34.61968 -34.13447 -32.95593 -30.63743 -28.61825 -27.50727 -25.30332 -24.15156 -22.46043 -21.29770 -20.97270 -19.41546 -18.09333 -17.49554 -17.11222 -16.36386 -15.89055 -15.83475 -15.57372 -15.21395 -14.73111 -14.48917 -14.25550 -13.88972 -13.34401 -13.03316 -12.80250 -12.74445 -12.64805 -12.59422 -12.28390 -12.09830 -11.89724 -11.84592 -11.74233 -11.51607 -11.00815 -10.80591 -10.64497 -10.39047 -9.55782 -8.64544 -6.45055 1.57736 1.62299 1.78176 1.81439 2.23004 2.57122 3.09200 3.31484 3.57457 3.81469 3.86998 4.12521 4.12911 4.20446 4.26320 4.32565 4.43991 4.63564 4.77141 4.79592 4.87933 4.90652 4.96786 4.98961 5.00593 5.08707 5.18889 5.30833 5.52030 5.55169 5.70052 5.86074 6.02851 6.18526 6.49510 6.99354 7.42582 7.53461 8.70368 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.008443 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.980980 B = 3315.749847 C = 4293.683672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.092 4.092 3 C -0.124 4.124 4 C 0.254 3.746 5 H -0.001 1.001 6 C -0.598 4.598 7 H 0.065 0.935 8 C -0.018 4.018 9 N -0.923 5.923 10 Si 1.117 2.883 11 H -0.279 1.279 12 H -0.261 1.261 13 H -0.290 1.290 14 N -0.698 5.698 15 C 0.494 3.506 16 O -0.586 6.586 17 C 0.059 3.941 18 H 0.117 0.883 19 C -0.141 4.141 20 C -0.144 4.144 21 C 0.034 3.966 22 O -0.386 6.386 23 H 0.026 0.974 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.060 0.940 29 H 0.025 0.975 30 H 0.258 0.742 31 H 0.397 0.603 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.124 -0.821 -6.454 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.111 4.111 3 C -0.182 4.182 4 C 0.153 3.847 5 H 0.017 0.983 6 C -0.636 4.636 7 H 0.083 0.917 8 C -0.219 4.219 9 N -0.558 5.558 10 Si 0.939 3.061 11 H -0.205 1.205 12 H -0.185 1.185 13 H -0.216 1.216 14 N -0.348 5.348 15 C 0.280 3.720 16 O -0.468 6.468 17 C -0.002 4.002 18 H 0.134 0.866 19 C -0.179 4.179 20 C -0.182 4.182 21 C -0.042 4.042 22 O -0.305 6.305 23 H 0.045 0.955 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.232 0.768 32 H 0.064 0.936 33 H 0.129 0.871 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.090 -1.036 -5.092 10.470 hybrid contribution 0.694 1.003 -0.662 1.388 sum 9.784 -0.033 -5.753 11.350 Atomic orbital electron populations 1.21557 0.94419 1.01770 0.99985 1.21358 0.96620 0.94855 0.98312 1.21765 0.99994 0.96573 0.99828 1.18749 0.77127 0.95647 0.93165 0.98262 1.22300 1.44185 1.01214 0.95897 0.91691 1.27334 0.96310 1.06294 0.92009 1.70840 1.32453 1.21386 1.31165 0.82942 0.75454 0.71269 0.76475 1.20515 1.18480 1.21634 1.47197 1.08553 1.17360 1.61697 1.20979 0.89733 0.83491 0.77791 1.90623 1.75123 1.32976 1.48030 1.23022 0.90211 0.86342 1.00626 0.86583 1.22886 0.97893 0.98734 0.98431 1.22942 0.97346 0.96838 1.01067 1.23783 0.83289 0.96959 1.00134 1.89260 1.27397 1.29522 1.84340 0.95464 0.91699 0.92206 0.91572 0.94376 0.92103 0.95579 0.93201 0.76806 0.93646 0.87136 0.91044 0.86806 0.87877 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 8.76 71.98 0.63 -4.09 16 2 C -0.09 -3.90 2.70 -10.79 -0.03 -3.93 16 3 C -0.12 -5.20 7.78 71.98 0.56 -4.64 16 4 C 0.25 12.62 1.32 44.25 0.06 12.68 16 5 H 0.00 -0.04 6.57 -2.39 -0.02 -0.06 16 6 C -0.60 -30.47 7.25 25.60 0.19 -30.29 16 7 H 0.06 3.18 7.58 -2.91 -0.02 3.16 16 8 C -0.02 -0.95 5.45 84.65 0.46 -0.49 16 9 N -0.92 -54.99 13.56 21.45 0.29 -54.70 16 10 Si 1.12 46.89 29.91 68.60 2.05 48.94 16 11 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 13 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 14 N -0.70 -30.60 4.96 -446.08 -2.21 -32.81 16 15 C 0.49 21.94 5.60 87.66 0.49 22.43 16 16 O -0.59 -31.54 13.69 15.34 0.21 -31.33 16 17 C 0.06 1.98 3.70 30.35 0.11 2.09 16 18 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 19 C -0.14 -4.05 6.62 31.61 0.21 -3.84 16 20 C -0.14 -3.13 7.09 31.61 0.22 -2.90 16 21 C 0.03 0.79 7.63 72.48 0.55 1.35 16 22 O -0.39 -13.85 10.92 -130.61 -1.43 -15.28 16 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.06 2.36 7.16 -2.39 -0.02 2.35 16 26 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.04 1.65 5.66 -2.39 -0.01 1.64 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.02 1.19 7.80 -2.38 -0.02 1.18 16 30 H 0.26 16.17 6.94 -92.70 -0.64 15.53 16 31 H 0.40 15.41 8.59 -92.71 -0.80 14.61 16 32 H 0.04 1.65 7.86 -2.39 -0.02 1.63 16 33 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -70.66 297.85 2.75 -67.91 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.38 Total: 28.90 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 3.46 Total: -11.63 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -1.92 Total: -87.52 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -1.22 Total: -46.60 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.05 Total: 48.94 kcal Total: -70.66 2.75 -67.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.087 kcal (2) G-P(sol) polarization free energy of solvation -70.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds