Wall clock time and date at job start Mon Mar 30 2020 04:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47028 * 2 1 4 4 C 1.50696 * 109.47407 * 119.99627 * 2 1 3 5 5 H 1.08010 * 119.99549 * 357.26081 * 4 2 1 6 6 C 1.37875 * 120.00573 * 177.26253 * 4 2 1 7 7 N 1.31514 * 119.99844 * 352.84111 * 6 4 2 8 8 Si 1.86797 * 120.00360 * 172.84130 * 6 4 2 9 9 H 1.48501 * 109.47162 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47110 * 240.00255 * 8 6 4 11 11 H 1.48493 * 109.47550 * 119.99884 * 8 6 4 12 12 N 1.46498 * 109.47405 * 240.00025 * 2 1 3 13 13 C 1.34774 * 119.99858 * 59.99454 * 12 2 1 14 14 O 1.21278 * 120.00439 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99820 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.47995 * 304.98302 * 15 13 12 17 17 C 1.53098 * 109.47669 * 65.00218 * 15 13 12 18 18 C 1.53182 * 109.16187 * 177.59031 * 17 15 13 19 19 C 1.53179 * 109.03531 * 303.02227 * 18 17 15 20 20 C 1.53098 * 109.16303 * 56.98188 * 19 18 17 21 21 O 1.42895 * 109.48031 * 184.94390 * 15 13 12 22 22 H 1.09004 * 109.47157 * 293.74880 * 1 2 3 23 23 H 1.09003 * 109.47248 * 53.74586 * 1 2 3 24 24 H 1.08996 * 109.47094 * 173.74999 * 1 2 3 25 25 H 1.09003 * 109.46993 * 186.18192 * 3 2 1 26 26 H 1.09004 * 109.47266 * 306.18077 * 3 2 1 27 27 H 1.09001 * 109.47403 * 66.18179 * 3 2 1 28 28 H 0.97007 * 120.00047 * 2.27424 * 7 6 4 29 29 H 0.97001 * 119.99943 * 240.00227 * 12 2 1 30 30 H 1.09003 * 109.52542 * 297.49512 * 17 15 13 31 31 H 1.08998 * 109.52292 * 57.69117 * 17 15 13 32 32 H 1.09002 * 109.54059 * 62.88295 * 18 17 15 33 33 H 1.08997 * 109.54637 * 183.06391 * 18 17 15 34 34 H 1.09000 * 109.52166 * 176.88259 * 19 18 17 35 35 H 1.08999 * 109.52573 * 297.07319 * 19 18 17 36 36 H 1.08996 * 109.48214 * 62.37696 * 20 19 18 37 37 H 1.09004 * 109.47487 * 182.39844 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 1.3315 -1.0818 1.9635 6 6 3.3866 -0.8859 1.4206 7 7 4.2320 -0.5616 0.4668 8 14 4.0207 -1.5844 3.0328 9 1 2.8752 -1.8654 3.9351 10 1 4.9272 -0.5998 3.6765 11 1 4.7637 -2.8427 2.7690 12 7 2.0184 -0.6906 -1.1961 13 6 1.6927 -0.2302 -2.4202 14 8 0.9958 0.7561 -2.5316 15 6 2.1947 -0.9409 -3.6507 16 1 3.2810 -1.0193 -3.6075 17 6 1.5838 -2.3433 -3.7150 18 6 2.0509 -3.0368 -4.9985 19 6 1.6582 -2.1757 -6.2030 20 6 2.2663 -0.7799 -6.0424 21 8 1.8157 -0.2038 -4.8147 22 1 -0.3634 0.4139 0.9407 23 1 -0.3634 0.6077 -0.8287 24 1 -0.3633 -1.0215 -0.1119 25 1 3.1244 1.4445 -0.1107 26 1 1.5891 1.9873 -0.8295 27 1 1.7698 1.9235 0.9401 28 1 3.9055 -0.1682 -0.3576 29 1 2.5760 -1.4793 -1.1071 30 1 1.9077 -2.9218 -2.8498 31 1 0.4965 -2.2672 -3.7172 32 1 3.1340 -3.1575 -4.9742 33 1 1.5767 -4.0150 -5.0778 34 1 2.0354 -2.6343 -7.1170 35 1 0.5724 -2.0962 -6.2554 36 1 3.3535 -0.8561 -6.0309 37 1 1.9549 -0.1498 -6.8757 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260005775.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:04 Heat of formation + Delta-G solvation = -97.993640 kcal Electronic energy + Delta-G solvation = -18577.437650 eV Core-core repulsion = 15740.248406 eV Total energy + Delta-G solvation = -2837.189243 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.80967 -38.22938 -35.47465 -33.58134 -32.01212 -31.42427 -29.80999 -26.01138 -25.36402 -24.68016 -23.76673 -20.95287 -20.18706 -18.65743 -17.83990 -16.41578 -15.94564 -15.36275 -14.77217 -14.38059 -14.15341 -13.91418 -13.84671 -13.37085 -12.71607 -12.53730 -12.47065 -12.36997 -11.41419 -11.21147 -11.12897 -11.04732 -10.93504 -10.88248 -10.67510 -10.61074 -10.36326 -10.20189 -9.97325 -9.36122 -9.02345 -8.66254 -8.23893 -7.89883 -6.44122 -4.32087 3.34531 3.37212 3.45564 3.53024 3.59843 4.38114 4.51888 4.82060 4.84677 4.90792 5.06486 5.23049 5.27280 5.45680 5.58341 5.69919 5.73610 5.83032 5.92245 6.00382 6.08968 6.29662 6.39151 6.49138 6.65661 6.88160 7.00988 7.06349 7.19938 7.30627 7.54832 7.69776 7.98598 8.29168 8.57707 8.87627 9.24932 9.44426 10.83815 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031194 B = 0.007128 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.382746 B = 3927.343258 C = 4331.390634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.272 3.728 3 C -0.150 4.150 4 C -0.602 4.602 5 H 0.061 0.939 6 C 0.031 3.969 7 N -0.907 5.907 8 Si 1.073 2.927 9 H -0.288 1.288 10 H -0.285 1.285 11 H -0.287 1.287 12 N -0.697 5.697 13 C 0.506 3.494 14 O -0.541 6.541 15 C 0.070 3.930 16 H 0.077 0.923 17 C -0.144 4.144 18 C -0.120 4.120 19 C -0.157 4.157 20 C 0.058 3.942 21 O -0.354 6.354 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.037 0.963 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.282 0.718 29 H 0.396 0.604 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.691 -5.301 -9.407 10.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.190 3.810 3 C -0.209 4.209 4 C -0.640 4.640 5 H 0.079 0.921 6 C -0.176 4.176 7 N -0.544 5.544 8 Si 0.901 3.099 9 H -0.214 1.214 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.348 5.348 13 C 0.290 3.710 14 O -0.419 6.419 15 C 0.009 3.991 16 H 0.094 0.906 17 C -0.182 4.182 18 C -0.158 4.158 19 C -0.194 4.194 20 C -0.019 4.019 21 O -0.272 6.272 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.231 0.769 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.933 -4.859 -8.658 9.972 hybrid contribution -0.845 -0.265 -0.820 1.207 sum -1.779 -5.124 -9.478 10.920 Atomic orbital electron populations 1.22022 0.97457 0.99999 1.00501 1.18249 0.90331 0.90004 0.82413 1.22168 1.01236 0.97748 0.99737 1.22165 0.94562 1.41875 1.05425 0.92117 1.25906 0.93344 0.95170 1.03221 1.70764 1.38433 1.37914 1.07304 0.83485 0.75428 0.76484 0.74497 1.21393 1.21170 1.21321 1.47256 1.51434 1.31303 1.04838 1.20127 0.81434 0.85004 0.84484 1.90580 1.38331 1.26292 1.86697 1.22071 0.99023 0.91428 0.86625 0.90563 1.22106 1.02093 0.95143 0.98837 1.21588 1.01310 0.98719 0.94183 1.22206 1.02086 0.96614 0.98528 1.22607 0.97932 0.94075 0.87326 1.88070 1.77541 1.48905 1.12643 0.93381 0.92856 0.94396 0.92928 0.93691 0.93671 0.90357 0.76902 0.90122 0.90683 0.91623 0.91290 0.91064 0.91037 0.93305 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.24 37.16 0.31 -2.96 16 2 C 0.27 6.72 0.63 -132.97 -0.08 6.63 16 3 C -0.15 -3.77 7.95 37.16 0.30 -3.48 16 4 C -0.60 -15.73 8.05 -34.44 -0.28 -16.01 16 5 H 0.06 1.60 7.76 -52.48 -0.41 1.19 16 6 C 0.03 0.80 5.06 -17.82 -0.09 0.71 16 7 N -0.91 -24.81 12.59 55.43 0.70 -24.11 16 8 Si 1.07 23.49 29.91 -169.99 -5.08 18.41 16 9 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.70 -15.89 3.55 -48.68 -0.17 -16.06 16 13 C 0.51 11.17 6.60 -10.99 -0.07 11.10 16 14 O -0.54 -13.63 12.86 -14.30 -0.18 -13.81 16 15 C 0.07 1.25 3.05 -27.83 -0.09 1.16 16 16 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 17 C -0.14 -2.11 5.37 -26.59 -0.14 -2.26 16 18 C -0.12 -1.39 6.03 -26.54 -0.16 -1.55 16 19 C -0.16 -1.72 6.14 -26.59 -0.16 -1.88 16 20 C 0.06 0.74 6.84 37.21 0.25 1.00 16 21 O -0.35 -6.39 9.94 -55.09 -0.55 -6.93 16 22 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.05 1.25 6.36 -51.93 -0.33 0.92 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 1.39 6.05 -51.93 -0.31 1.07 16 26 H 0.04 1.13 6.36 -51.93 -0.33 0.80 16 27 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.28 7.65 4.46 -40.82 -0.18 7.47 16 29 H 0.40 8.89 7.33 -40.82 -0.30 8.59 16 30 H 0.08 1.16 7.99 -51.93 -0.41 0.74 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 290.01 15.07 4.37 4.37 Total: -1.00 -30.08 290.01 -6.86 -36.94 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.72 Total: 8.74 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.22 Total: -7.54 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.53 Total: -40.17 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.73 Total: -20.75 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.08 Total: 18.41 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.08 -6.86 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005775.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.053 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds