Wall clock time and date at job start Mon Mar 30 2020 04:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47028 * 2 1 4 4 C 1.50696 * 109.47407 * 119.99627 * 2 1 3 5 5 H 1.08010 * 119.99549 * 357.26081 * 4 2 1 6 6 C 1.37875 * 120.00573 * 177.26253 * 4 2 1 7 7 N 1.31514 * 119.99844 * 352.84111 * 6 4 2 8 8 Si 1.86797 * 120.00360 * 172.84130 * 6 4 2 9 9 H 1.48501 * 109.47162 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47110 * 240.00255 * 8 6 4 11 11 H 1.48493 * 109.47550 * 119.99884 * 8 6 4 12 12 N 1.46498 * 109.47405 * 240.00025 * 2 1 3 13 13 C 1.34774 * 119.99858 * 59.99454 * 12 2 1 14 14 O 1.21278 * 120.00439 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99820 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.47995 * 304.98302 * 15 13 12 17 17 C 1.53098 * 109.47669 * 65.00218 * 15 13 12 18 18 C 1.53182 * 109.16187 * 177.59031 * 17 15 13 19 19 C 1.53179 * 109.03531 * 303.02227 * 18 17 15 20 20 C 1.53098 * 109.16303 * 56.98188 * 19 18 17 21 21 O 1.42895 * 109.48031 * 184.94390 * 15 13 12 22 22 H 1.09004 * 109.47157 * 293.74880 * 1 2 3 23 23 H 1.09003 * 109.47248 * 53.74586 * 1 2 3 24 24 H 1.08996 * 109.47094 * 173.74999 * 1 2 3 25 25 H 1.09003 * 109.46993 * 186.18192 * 3 2 1 26 26 H 1.09004 * 109.47266 * 306.18077 * 3 2 1 27 27 H 1.09001 * 109.47403 * 66.18179 * 3 2 1 28 28 H 0.97007 * 120.00047 * 2.27424 * 7 6 4 29 29 H 0.97001 * 119.99943 * 240.00227 * 12 2 1 30 30 H 1.09003 * 109.52542 * 297.49512 * 17 15 13 31 31 H 1.08998 * 109.52292 * 57.69117 * 17 15 13 32 32 H 1.09002 * 109.54059 * 62.88295 * 18 17 15 33 33 H 1.08997 * 109.54637 * 183.06391 * 18 17 15 34 34 H 1.09000 * 109.52166 * 176.88259 * 19 18 17 35 35 H 1.08999 * 109.52573 * 297.07319 * 19 18 17 36 36 H 1.08996 * 109.48214 * 62.37696 * 20 19 18 37 37 H 1.09004 * 109.47487 * 182.39844 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 1.3315 -1.0818 1.9635 6 6 3.3866 -0.8859 1.4206 7 7 4.2320 -0.5616 0.4668 8 14 4.0207 -1.5844 3.0328 9 1 2.8752 -1.8654 3.9351 10 1 4.9272 -0.5998 3.6765 11 1 4.7637 -2.8427 2.7690 12 7 2.0184 -0.6906 -1.1961 13 6 1.6927 -0.2302 -2.4202 14 8 0.9958 0.7561 -2.5316 15 6 2.1947 -0.9409 -3.6507 16 1 3.2810 -1.0193 -3.6075 17 6 1.5838 -2.3433 -3.7150 18 6 2.0509 -3.0368 -4.9985 19 6 1.6582 -2.1757 -6.2030 20 6 2.2663 -0.7799 -6.0424 21 8 1.8157 -0.2038 -4.8147 22 1 -0.3634 0.4139 0.9407 23 1 -0.3634 0.6077 -0.8287 24 1 -0.3633 -1.0215 -0.1119 25 1 3.1244 1.4445 -0.1107 26 1 1.5891 1.9873 -0.8295 27 1 1.7698 1.9235 0.9401 28 1 3.9055 -0.1682 -0.3576 29 1 2.5760 -1.4793 -1.1071 30 1 1.9077 -2.9218 -2.8498 31 1 0.4965 -2.2672 -3.7172 32 1 3.1340 -3.1575 -4.9742 33 1 1.5767 -4.0150 -5.0778 34 1 2.0354 -2.6343 -7.1170 35 1 0.5724 -2.0962 -6.2554 36 1 3.3535 -0.8561 -6.0309 37 1 1.9549 -0.1498 -6.8757 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260005775.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:04 Heat of formation + Delta-G solvation = -116.232927 kcal Electronic energy + Delta-G solvation = -18578.228565 eV Core-core repulsion = 15740.248406 eV Total energy + Delta-G solvation = -2837.980158 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.35069 -39.73061 -37.37073 -34.73112 -33.76677 -33.08996 -31.36975 -28.01812 -26.74037 -26.59204 -24.86986 -22.65678 -21.30333 -20.47473 -19.68312 -18.00065 -17.37511 -16.67176 -16.34373 -15.86392 -15.63226 -15.46180 -15.31215 -14.92276 -14.46157 -14.38051 -13.75414 -13.64736 -13.16265 -12.97585 -12.74378 -12.65788 -12.50795 -12.45067 -12.18540 -11.95705 -11.94489 -11.89182 -11.41841 -10.88761 -10.65479 -10.53001 -10.10293 -9.79300 -8.50082 -6.40931 1.60126 1.64621 1.73422 1.84360 2.12193 2.56528 3.05592 3.31172 3.69887 3.77657 3.87251 4.01247 4.04931 4.17916 4.43169 4.46544 4.53951 4.60084 4.75678 4.78099 4.84345 4.86693 4.99757 5.01760 5.03629 5.07783 5.10945 5.24414 5.32791 5.51154 5.71886 6.03277 6.15251 6.23760 6.53871 6.99915 7.41346 7.48086 8.77317 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031194 B = 0.007128 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.382746 B = 3927.343258 C = 4331.390634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.262 3.738 3 C -0.139 4.139 4 C -0.613 4.613 5 H 0.056 0.944 6 C -0.007 4.007 7 N -0.926 5.926 8 Si 1.118 2.882 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.695 5.695 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.078 3.922 16 H 0.085 0.915 17 C -0.139 4.139 18 C -0.116 4.116 19 C -0.151 4.151 20 C 0.047 3.953 21 O -0.388 6.388 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.033 0.967 26 H 0.037 0.963 27 H 0.047 0.953 28 H 0.275 0.725 29 H 0.398 0.602 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.292 -6.930 -10.055 12.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.179 3.821 3 C -0.198 4.198 4 C -0.651 4.651 5 H 0.074 0.926 6 C -0.209 4.209 7 N -0.563 5.563 8 Si 0.941 3.059 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.346 5.346 13 C 0.285 3.715 14 O -0.458 6.458 15 C 0.017 3.983 16 H 0.103 0.897 17 C -0.177 4.177 18 C -0.154 4.154 19 C -0.189 4.189 20 C -0.029 4.029 21 O -0.307 6.307 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.233 0.767 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.540 -6.503 -9.332 11.387 hybrid contribution -0.996 0.309 -0.681 1.245 sum -1.536 -6.195 -10.013 11.874 Atomic orbital electron populations 1.21909 0.96395 1.00194 1.00479 1.18267 0.91242 0.89547 0.83063 1.22067 0.99806 0.98458 0.99476 1.22317 0.94848 1.42019 1.05951 0.92559 1.27086 0.93683 0.94907 1.05223 1.70852 1.38778 1.39074 1.07619 0.82882 0.75391 0.76195 0.71405 1.20093 1.21227 1.20265 1.47027 1.51410 1.31180 1.04957 1.20875 0.80570 0.84581 0.85480 1.90549 1.39994 1.27940 1.87309 1.21919 0.99295 0.92208 0.84921 0.89694 1.22089 1.01122 0.93444 1.01066 1.21617 1.02161 0.99267 0.92312 1.22190 1.01673 0.95358 0.99659 1.22960 0.98924 0.95536 0.85493 1.88016 1.78284 1.50335 1.14064 0.92615 0.93816 0.93808 0.94754 0.94398 0.93440 0.91180 0.76713 0.90018 0.91931 0.90479 0.89205 0.87847 0.91696 0.92054 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.08 8.24 71.98 0.59 -5.49 16 2 C 0.26 13.02 0.63 2.86 0.00 13.02 16 3 C -0.14 -7.13 7.95 71.98 0.57 -6.56 16 4 C -0.61 -31.90 8.05 25.60 0.21 -31.69 16 5 H 0.06 2.93 7.76 -2.91 -0.02 2.91 16 6 C -0.01 -0.34 5.06 84.65 0.43 0.09 16 7 N -0.93 -50.53 12.59 21.45 0.27 -50.26 16 8 Si 1.12 46.38 29.91 68.60 2.05 48.43 16 9 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 10 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 12 N -0.69 -32.00 3.55 -426.33 -1.51 -33.52 16 13 C 0.50 22.33 6.60 87.66 0.58 22.91 16 14 O -0.58 -29.77 12.86 15.96 0.21 -29.57 16 15 C 0.08 2.73 3.05 29.88 0.09 2.82 16 16 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 17 C -0.14 -3.91 5.37 30.69 0.16 -3.75 16 18 C -0.12 -2.33 6.03 30.72 0.19 -2.14 16 19 C -0.15 -2.85 6.14 30.69 0.19 -2.67 16 20 C 0.05 1.10 6.84 72.01 0.49 1.60 16 21 O -0.39 -13.79 9.94 -129.99 -1.29 -15.08 16 22 H 0.05 2.42 8.14 -2.38 -0.02 2.41 16 23 H 0.04 2.08 6.36 -2.39 -0.02 2.06 16 24 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.03 1.84 6.05 -2.39 -0.01 1.83 16 26 H 0.04 1.95 6.36 -2.39 -0.02 1.93 16 27 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.27 15.06 4.46 -92.70 -0.41 14.65 16 29 H 0.40 17.96 7.33 -92.71 -0.68 17.28 16 30 H 0.08 2.25 7.99 -2.39 -0.02 2.23 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -64.29 290.01 3.95 -60.34 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.73 Total: 31.51 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 3.50 Total: -11.85 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -1.24 Total: -83.78 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -1.09 Total: -44.65 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.05 Total: 48.43 kcal Total: -64.29 3.95 -60.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005775.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.890 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds