Wall clock time and date at job start Mon Mar 30 2020 04:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50699 * 109.46866 * 120.00044 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47438 * 119.99776 * 8 6 4 11 11 H 1.48494 * 109.47197 * 239.99736 * 8 6 4 12 12 N 1.46496 * 109.46995 * 239.99963 * 2 1 3 13 13 C 1.34774 * 120.00233 * 60.00569 * 12 2 1 14 14 O 1.21284 * 119.99952 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00212 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47476 * 54.99677 * 15 13 12 17 17 C 1.53086 * 109.48028 * 294.97627 * 15 13 12 18 18 C 1.53181 * 109.16333 * 182.41934 * 17 15 13 19 19 C 1.53181 * 109.04313 * 56.96346 * 18 17 15 20 20 C 1.53089 * 109.16069 * 303.02321 * 19 18 17 21 21 O 1.42900 * 109.41709 * 57.61416 * 20 19 18 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 26 26 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 28 28 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 29 29 H 0.97004 * 119.99916 * 240.00270 * 12 2 1 30 30 H 1.09004 * 109.51856 * 302.31065 * 17 15 13 31 31 H 1.08996 * 109.52598 * 62.49691 * 17 15 13 32 32 H 1.08994 * 109.53152 * 297.09290 * 18 17 15 33 33 H 1.08997 * 109.61509 * 176.87873 * 18 17 15 34 34 H 1.08999 * 109.51590 * 183.12288 * 19 18 17 35 35 H 1.09000 * 109.52470 * 62.92986 * 19 18 17 36 36 H 1.08999 * 109.48499 * 297.62715 * 20 19 18 37 37 H 1.09000 * 109.48964 * 177.60245 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1473 -2.2864 3.6038 10 1 3.1471 -0.1858 4.8162 11 1 1.1677 -1.5866 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 1.6929 -0.2301 -2.4202 14 8 0.9953 0.7558 -2.5315 15 6 2.1957 -0.9402 -3.6507 16 1 1.9077 -1.9906 -3.6073 17 6 3.7213 -0.8313 -3.7154 18 6 4.2193 -1.5027 -4.9991 19 6 3.5377 -0.8459 -6.2034 20 6 2.0192 -0.9545 -6.0424 21 8 1.6263 -0.3377 -4.8148 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 0.7094 1.1618 3.4844 29 1 2.5760 -1.4793 -1.1071 30 1 4.0116 0.2193 -3.7178 31 1 4.1591 -1.3292 -2.8503 32 1 3.9727 -2.5641 -4.9745 33 1 5.2994 -1.3811 -5.0802 34 1 3.8444 -1.3544 -7.1175 35 1 3.8242 0.2045 -6.2561 36 1 1.7291 -2.0051 -6.0305 37 1 1.5283 -0.4514 -6.8755 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260007374.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:06 Heat of formation + Delta-G solvation = -93.589973 kcal Electronic energy + Delta-G solvation = -18295.378880 eV Core-core repulsion = 15458.380594 eV Total energy + Delta-G solvation = -2836.998286 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.83570 -38.15642 -35.18856 -33.65974 -32.46750 -31.39366 -29.29014 -25.51911 -25.43560 -25.22492 -23.82773 -20.97844 -20.22467 -18.60085 -17.50918 -16.25538 -15.81067 -15.32520 -14.97221 -14.77164 -14.19211 -14.10112 -13.68744 -13.16113 -12.64592 -12.55049 -12.31346 -11.86933 -11.47225 -11.31426 -11.22697 -11.07090 -11.04478 -10.94505 -10.44174 -10.39643 -10.27304 -10.17594 -9.71889 -9.42464 -9.02655 -8.51414 -8.39095 -7.82955 -6.07131 -4.19640 3.23621 3.31460 3.33599 3.42574 3.52233 4.30470 4.50718 4.76130 4.78200 4.88412 4.99710 5.16521 5.20697 5.36616 5.49161 5.61488 5.65864 5.75953 5.85909 5.95113 6.02516 6.24301 6.77763 6.97556 7.05554 7.23122 7.32183 7.37725 7.64601 7.67221 7.68083 7.85590 8.07146 8.30925 8.70224 8.86213 9.21111 9.49105 10.94287 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.043043 B = 0.005939 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.351363 B = 4713.078828 C = 5068.442424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.293 3.707 3 C -0.147 4.147 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.069 3.931 7 N -0.879 5.879 8 Si 0.901 3.099 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.705 5.705 13 C 0.509 3.491 14 O -0.527 6.527 15 C 0.071 3.929 16 H 0.075 0.925 17 C -0.145 4.145 18 C -0.120 4.120 19 C -0.158 4.158 20 C 0.058 3.942 21 O -0.353 6.353 22 H 0.035 0.965 23 H 0.021 0.979 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.021 0.979 27 H 0.035 0.965 28 H 0.263 0.737 29 H 0.387 0.613 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.632 -5.825 -12.656 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.210 3.790 3 C -0.205 4.205 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.134 4.134 7 N -0.516 5.516 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.355 5.355 13 C 0.292 3.708 14 O -0.404 6.404 15 C 0.010 3.990 16 H 0.093 0.907 17 C -0.183 4.183 18 C -0.158 4.158 19 C -0.195 4.195 20 C -0.019 4.019 21 O -0.271 6.271 22 H 0.054 0.946 23 H 0.040 0.960 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.219 0.781 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.901 -4.813 -12.546 14.303 hybrid contribution 0.867 -1.176 0.835 1.683 sum 5.768 -5.990 -11.711 14.363 Atomic orbital electron populations 1.22087 0.97418 0.99114 1.01993 1.18137 0.91280 0.89686 0.79856 1.22079 0.97996 0.98488 1.01971 1.21155 1.32493 1.12584 0.90074 0.92186 1.24821 0.94759 0.94931 0.98889 1.69852 1.35920 1.22362 1.23473 0.86408 0.78576 0.79491 0.82672 1.19841 1.20932 1.20933 1.46568 1.52044 1.31165 1.05750 1.19925 0.81509 0.85241 0.84124 1.90629 1.37436 1.25907 1.86420 1.22047 0.93245 0.96974 0.86767 0.90749 1.22120 0.94611 1.02840 0.98729 1.21587 1.00363 0.99587 0.94244 1.22214 0.96666 1.02141 0.98521 1.22607 0.94178 0.97768 0.87332 1.88090 1.69454 1.56887 1.12625 0.94572 0.95964 0.89415 0.89428 0.95977 0.94605 0.92716 0.78106 0.90458 0.90111 0.91735 0.91262 0.91054 0.90927 0.93361 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 8.18 37.16 0.30 -3.53 16 2 C 0.29 7.33 0.78 -132.97 -0.10 7.23 16 3 C -0.15 -3.79 8.18 37.16 0.30 -3.49 16 4 C -0.52 -13.63 8.18 -34.44 -0.28 -13.91 16 5 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -24.00 9.35 55.43 0.52 -23.48 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.71 -14.86 5.06 -48.68 -0.25 -15.11 16 13 C 0.51 10.62 6.60 -10.99 -0.07 10.55 16 14 O -0.53 -13.23 12.72 -14.30 -0.18 -13.41 16 15 C 0.07 1.14 3.05 -27.84 -0.09 1.05 16 16 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.14 -1.90 5.37 -26.59 -0.14 -2.05 16 18 C -0.12 -1.21 6.03 -26.54 -0.16 -1.37 16 19 C -0.16 -1.57 6.14 -26.59 -0.16 -1.73 16 20 C 0.06 0.68 6.84 37.20 0.25 0.93 16 21 O -0.35 -5.95 9.94 -55.09 -0.55 -6.50 16 22 H 0.04 0.94 6.17 -51.93 -0.32 0.62 16 23 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.03 0.93 6.17 -51.93 -0.32 0.61 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.39 7.03 8.17 -40.82 -0.33 6.70 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.08 0.98 7.99 -51.93 -0.41 0.56 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 290.38 15.07 4.38 4.38 Total: -1.00 -30.68 290.38 -7.12 -37.80 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.78 Total: 5.57 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -0.24 Total: -4.59 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.27 Total: -38.59 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.73 Total: -19.91 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.68 -7.12 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260007374.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.792 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds