Wall clock time and date at job start Mon Mar 30 2020 04:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50699 * 109.46866 * 120.00044 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47438 * 119.99776 * 8 6 4 11 11 H 1.48494 * 109.47197 * 239.99736 * 8 6 4 12 12 N 1.46496 * 109.46995 * 239.99963 * 2 1 3 13 13 C 1.34774 * 120.00233 * 60.00569 * 12 2 1 14 14 O 1.21284 * 119.99952 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00212 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47476 * 54.99677 * 15 13 12 17 17 C 1.53086 * 109.48028 * 294.97627 * 15 13 12 18 18 C 1.53181 * 109.16333 * 182.41934 * 17 15 13 19 19 C 1.53181 * 109.04313 * 56.96346 * 18 17 15 20 20 C 1.53089 * 109.16069 * 303.02321 * 19 18 17 21 21 O 1.42900 * 109.41709 * 57.61416 * 20 19 18 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 26 26 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 28 28 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 29 29 H 0.97004 * 119.99916 * 240.00270 * 12 2 1 30 30 H 1.09004 * 109.51856 * 302.31065 * 17 15 13 31 31 H 1.08996 * 109.52598 * 62.49691 * 17 15 13 32 32 H 1.08994 * 109.53152 * 297.09290 * 18 17 15 33 33 H 1.08997 * 109.61509 * 176.87873 * 18 17 15 34 34 H 1.08999 * 109.51590 * 183.12288 * 19 18 17 35 35 H 1.09000 * 109.52470 * 62.92986 * 19 18 17 36 36 H 1.08999 * 109.48499 * 297.62715 * 20 19 18 37 37 H 1.09000 * 109.48964 * 177.60245 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1473 -2.2864 3.6038 10 1 3.1471 -0.1858 4.8162 11 1 1.1677 -1.5866 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 1.6929 -0.2301 -2.4202 14 8 0.9953 0.7558 -2.5315 15 6 2.1957 -0.9402 -3.6507 16 1 1.9077 -1.9906 -3.6073 17 6 3.7213 -0.8313 -3.7154 18 6 4.2193 -1.5027 -4.9991 19 6 3.5377 -0.8459 -6.2034 20 6 2.0192 -0.9545 -6.0424 21 8 1.6263 -0.3377 -4.8148 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 0.7094 1.1618 3.4844 29 1 2.5760 -1.4793 -1.1071 30 1 4.0116 0.2193 -3.7178 31 1 4.1591 -1.3292 -2.8503 32 1 3.9727 -2.5641 -4.9745 33 1 5.2994 -1.3811 -5.0802 34 1 3.8444 -1.3544 -7.1175 35 1 3.8242 0.2045 -6.2561 36 1 1.7291 -2.0051 -6.0305 37 1 1.5283 -0.4514 -6.8755 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260007374.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:05 Heat of formation + Delta-G solvation = -113.631684 kcal Electronic energy + Delta-G solvation = -18296.247953 eV Core-core repulsion = 15458.380594 eV Total energy + Delta-G solvation = -2837.867360 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.24195 -39.58797 -37.08397 -34.75915 -34.19069 -32.77448 -30.95767 -27.64599 -27.33238 -26.53880 -24.81064 -22.61700 -21.22405 -20.40871 -19.16897 -17.66204 -17.34020 -16.81735 -16.53503 -16.03019 -15.51138 -15.29515 -15.24220 -14.58825 -14.36806 -13.97019 -13.69950 -13.58323 -13.28741 -12.95943 -12.93587 -12.49203 -12.39973 -12.28803 -12.11098 -12.05902 -11.88812 -11.77535 -11.35638 -10.95194 -10.53482 -10.47728 -10.16744 -9.67994 -8.06792 -6.26653 1.46798 1.48850 1.59403 1.81605 2.14860 2.47655 3.18971 3.22989 3.75718 3.83925 3.93685 4.06374 4.11532 4.25199 4.51954 4.65945 4.69656 4.83524 4.88594 4.89584 5.01464 5.06127 5.10378 5.17912 5.22307 5.27599 5.38753 5.54060 5.57069 5.73470 5.90163 5.93293 6.23601 6.27240 6.75924 7.08065 7.39723 7.61836 8.94457 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.043043 B = 0.005939 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.351363 B = 4713.078828 C = 5068.442424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.290 3.710 3 C -0.134 4.134 4 C -0.536 4.536 5 H 0.072 0.928 6 C 0.022 3.978 7 N -0.907 5.907 8 Si 0.968 3.032 9 H -0.261 1.261 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.700 5.700 13 C 0.501 3.499 14 O -0.577 6.577 15 C 0.080 3.920 16 H 0.102 0.898 17 C -0.142 4.142 18 C -0.115 4.115 19 C -0.155 4.155 20 C 0.049 3.951 21 O -0.392 6.392 22 H 0.023 0.977 23 H 0.024 0.976 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.263 0.737 29 H 0.403 0.597 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.290 -8.157 -13.512 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.206 3.794 3 C -0.193 4.193 4 C -0.575 4.575 5 H 0.090 0.910 6 C -0.179 4.179 7 N -0.545 5.545 8 Si 0.793 3.207 9 H -0.185 1.185 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.350 5.350 13 C 0.287 3.713 14 O -0.457 6.457 15 C 0.019 3.981 16 H 0.119 0.881 17 C -0.180 4.180 18 C -0.152 4.152 19 C -0.192 4.192 20 C -0.027 4.027 21 O -0.312 6.312 22 H 0.042 0.958 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.238 0.762 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.589 -7.185 -13.428 16.594 hybrid contribution 0.307 -0.409 1.038 1.157 sum 6.896 -7.593 -12.390 16.085 Atomic orbital electron populations 1.21944 0.98528 0.98661 1.00289 1.17945 0.90514 0.89464 0.81526 1.21927 0.97924 0.99183 1.00234 1.21434 1.32645 1.12962 0.90409 0.91010 1.25641 0.94862 0.95538 1.01834 1.69992 1.36825 1.23622 1.24066 0.85362 0.77909 0.78570 0.78828 1.18524 1.21014 1.21035 1.46303 1.52151 1.31460 1.05101 1.20868 0.80314 0.84696 0.85385 1.90600 1.39602 1.28248 1.87232 1.21946 0.94752 0.96965 0.84392 0.88084 1.22127 0.92416 1.02143 1.01313 1.21609 1.01247 1.00223 0.92157 1.22208 0.95244 1.01842 0.99916 1.22930 0.95676 0.98703 0.85398 1.88034 1.70474 1.58407 1.14236 0.95788 0.95644 0.91485 0.91521 0.95641 0.95850 0.92767 0.76199 0.92691 0.88967 0.89757 0.89554 0.88010 0.92257 0.91443 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.20 8.18 71.98 0.59 -6.61 16 2 C 0.29 14.60 0.78 2.86 0.00 14.61 16 3 C -0.13 -7.10 8.18 71.98 0.59 -6.51 16 4 C -0.54 -27.46 8.18 25.60 0.21 -27.25 16 5 H 0.07 3.43 7.60 -2.91 -0.02 3.41 16 6 C 0.02 1.12 5.15 84.66 0.44 1.56 16 7 N -0.91 -50.18 9.35 21.45 0.20 -49.98 16 8 Si 0.97 41.16 29.54 68.60 2.03 43.19 16 9 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.70 -29.09 5.06 -426.33 -2.16 -31.25 16 13 C 0.50 20.93 6.60 87.66 0.58 21.51 16 14 O -0.58 -29.79 12.72 15.94 0.20 -29.58 16 15 C 0.08 2.45 3.05 29.88 0.09 2.54 16 16 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 17 C -0.14 -3.43 5.37 30.68 0.16 -3.26 16 18 C -0.12 -1.90 6.03 30.72 0.19 -1.71 16 19 C -0.15 -2.59 6.14 30.68 0.19 -2.40 16 20 C 0.05 1.02 6.84 72.01 0.49 1.51 16 21 O -0.39 -12.89 9.94 -130.00 -1.29 -14.19 16 22 H 0.02 1.28 6.17 -2.39 -0.01 1.27 16 23 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 25 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 26 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.02 1.25 6.17 -2.39 -0.01 1.23 16 28 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 29 H 0.40 13.96 8.17 -92.71 -0.76 13.20 16 30 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.09 1.98 7.99 -2.39 -0.02 1.96 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -67.36 290.38 2.80 -64.55 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.30 Total: 23.26 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 3.53 Total: -6.01 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -1.96 Total: -81.22 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -1.09 Total: -43.77 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -67.36 2.80 -64.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260007374.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.080 kcal (2) G-P(sol) polarization free energy of solvation -67.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds