Wall clock time and date at job start Mon Mar 30 2020 04:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47179 * 2 1 4 4 C 1.52998 * 109.47313 * 239.99506 * 2 1 3 5 5 C 1.50700 * 109.46810 * 119.99640 * 2 1 3 6 6 O 1.21277 * 120.00324 * 356.68078 * 5 2 1 7 7 N 1.34786 * 119.99778 * 176.68089 * 5 2 1 8 8 C 1.47152 * 120.97948 * 358.92855 * 7 5 2 9 9 C 1.53294 * 108.38150 * 129.44392 * 8 7 5 10 10 O 1.42964 * 109.22284 * 52.29776 * 9 8 7 11 11 C 1.42954 * 114.17029 * 297.41947 * 10 9 8 12 12 C 1.47148 * 120.97936 * 178.90398 * 7 5 2 13 13 H 1.09008 * 109.67792 * 110.79984 * 12 7 5 14 14 C 1.50700 * 109.68647 * 350.28431 * 12 7 5 15 15 H 1.07999 * 119.99860 * 323.60306 * 14 12 7 16 16 C 1.37880 * 120.00218 * 143.60439 * 14 12 7 17 17 N 1.31516 * 119.99754 * 180.02562 * 16 14 12 18 18 Si 1.86796 * 120.00078 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.47206 * 89.99528 * 18 16 14 20 20 H 1.48505 * 109.46863 * 329.99758 * 18 16 14 21 21 H 1.48498 * 109.47300 * 210.00097 * 18 16 14 22 22 H 1.09001 * 109.47146 * 300.00384 * 1 2 3 23 23 H 1.09005 * 109.47002 * 60.00239 * 1 2 3 24 24 H 1.08996 * 109.47050 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47330 * 168.89136 * 3 2 1 26 26 H 1.09002 * 109.46842 * 288.88913 * 3 2 1 27 27 H 1.08997 * 109.47512 * 48.88790 * 3 2 1 28 28 H 1.09001 * 109.46692 * 309.17425 * 4 2 1 29 29 H 1.08999 * 109.46822 * 69.17162 * 4 2 1 30 30 H 1.09000 * 109.47473 * 189.17284 * 4 2 1 31 31 H 1.08995 * 109.67867 * 249.16439 * 8 7 5 32 32 H 1.08991 * 109.68198 * 9.68657 * 8 7 5 33 33 H 1.08996 * 109.51593 * 172.22697 * 9 8 7 34 34 H 1.09005 * 109.51394 * 292.32675 * 9 8 7 35 35 H 1.09003 * 109.51149 * 302.65626 * 11 10 9 36 36 H 1.09001 * 109.51755 * 182.50654 * 11 10 9 37 37 H 0.97000 * 119.99917 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2305 6 8 1.2459 -1.1182 2.0588 7 7 3.3556 -0.8923 1.4106 8 6 4.3275 -0.4270 0.4085 9 6 5.4038 0.3966 1.1248 10 8 5.9304 -0.3638 2.2150 11 6 4.9696 -0.6829 3.2242 12 6 3.8710 -1.5617 2.6154 13 1 4.2846 -2.5338 2.3467 14 6 2.7553 -1.7429 3.6121 15 1 1.9954 -0.9826 3.7161 16 6 2.7047 -2.8792 4.3914 17 7 1.7307 -3.0375 5.2608 18 14 4.0196 -4.1939 4.2122 19 1 5.1389 -3.9048 5.1442 20 1 4.5266 -4.1998 2.8164 21 1 3.4385 -5.5222 4.5333 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1119 1.4489 0.1980 26 1 1.8475 1.8959 -0.9724 27 1 1.5241 2.0103 0.7742 28 1 1.5491 -1.6908 -1.3347 29 1 1.8167 -0.1217 -2.1316 30 1 3.1177 -0.8654 -1.1710 31 1 4.7875 -1.2845 -0.0824 32 1 3.8226 0.1928 -0.3323 33 1 6.2056 0.6344 0.4259 34 1 4.9644 1.3198 1.5027 35 1 4.5285 0.2361 3.6104 36 1 5.4590 -1.2216 4.0356 37 1 1.6953 -3.8368 5.8093 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260011978.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:02 Heat of formation + Delta-G solvation = -46.122942 kcal Electronic energy + Delta-G solvation = -19178.895802 eV Core-core repulsion = 16343.955841 eV Total energy + Delta-G solvation = -2834.939961 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.08648 -37.71574 -35.41418 -33.96744 -32.59190 -30.63150 -27.62353 -27.19357 -26.94814 -24.95179 -22.69840 -22.42077 -20.07885 -18.08284 -17.15010 -15.89914 -15.67895 -15.44491 -14.67141 -14.52279 -14.27465 -14.15820 -13.64940 -13.57850 -12.71493 -12.48322 -12.18909 -12.03232 -11.93985 -11.66261 -11.50447 -11.34213 -11.18568 -10.93260 -10.74065 -10.65927 -10.22575 -10.09559 -9.68860 -9.58019 -9.32433 -8.67780 -7.82110 -7.41456 -5.93163 -3.86049 3.29725 3.37338 3.39069 3.65096 3.79875 4.39930 4.45674 4.88547 5.03215 5.16264 5.25367 5.30513 5.42241 5.48004 5.55020 5.67691 5.78769 5.82043 5.85837 6.01588 6.03871 6.11297 6.14243 6.19568 6.28511 6.39693 6.47918 6.50256 6.61890 6.92284 7.34083 7.52523 7.79212 8.40982 8.66636 9.20262 9.41346 9.61197 11.17326 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022931 B = 0.011267 C = 0.008643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.756244 B = 2484.441890 C = 3238.944126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.156 4.156 5 C 0.511 3.489 6 O -0.476 6.476 7 N -0.609 5.609 8 C 0.051 3.949 9 C 0.050 3.950 10 O -0.398 6.398 11 C 0.051 3.949 12 C 0.202 3.798 13 H 0.046 0.954 14 C -0.483 4.483 15 H 0.107 0.893 16 C 0.072 3.928 17 N -0.891 5.891 18 Si 0.858 3.142 19 H -0.275 1.275 20 H -0.264 1.264 21 H -0.287 1.287 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 7.517 -12.807 15.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 C -0.205 4.205 4 C -0.213 4.213 5 C 0.296 3.704 6 O -0.347 6.347 7 N -0.345 5.345 8 C -0.073 4.073 9 C -0.028 4.028 10 O -0.317 6.317 11 C -0.026 4.026 12 C 0.101 3.899 13 H 0.064 0.936 14 C -0.521 4.521 15 H 0.125 0.875 16 C -0.130 4.130 17 N -0.529 5.529 18 Si 0.686 3.314 19 H -0.201 1.201 20 H -0.189 1.189 21 H -0.213 1.213 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.037 7.088 -12.162 14.644 hybrid contribution 0.494 -0.765 -0.134 0.920 sum 4.531 6.323 -12.295 14.550 Atomic orbital electron populations 1.21600 0.92580 1.02558 1.01223 1.20954 0.97668 0.96129 0.95304 1.22103 1.01777 0.94586 1.02061 1.22267 1.02484 1.00616 0.95956 1.20291 0.82427 0.80617 0.87052 1.90913 1.54770 1.47179 1.41851 1.48417 1.04910 1.59893 1.21329 1.22902 0.92057 0.99293 0.93034 1.22849 0.96460 0.93701 0.89809 1.87844 1.37276 1.73677 1.32882 1.23615 0.89900 0.99361 0.89737 1.20272 0.94340 0.91722 0.83610 0.93619 1.21281 1.08439 1.07040 1.15377 0.87521 1.24952 0.95277 0.97287 0.95442 1.69874 1.31243 1.27885 1.23941 0.87137 0.82802 0.82615 0.78833 1.20082 1.18901 1.21274 0.91988 0.92997 0.92150 0.91515 0.92173 0.92137 0.92271 0.92262 0.90867 0.91796 0.87763 0.89068 0.93354 0.93170 0.89000 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 7.73 37.16 0.29 -1.58 16 2 C -0.10 -1.51 0.75 -155.66 -0.12 -1.62 16 3 C -0.15 -1.89 8.10 37.16 0.30 -1.59 16 4 C -0.16 -2.01 8.09 37.16 0.30 -1.71 16 5 C 0.51 10.92 6.38 -10.98 -0.07 10.85 16 6 O -0.48 -12.77 12.06 5.56 0.07 -12.70 16 7 N -0.61 -12.61 3.02 -166.06 -0.50 -13.11 16 8 C 0.05 0.78 4.00 -3.53 -0.01 0.77 16 9 C 0.05 0.74 6.82 37.31 0.25 0.99 16 10 O -0.40 -7.55 10.74 -35.23 -0.38 -7.93 16 11 C 0.05 1.09 6.27 37.31 0.23 1.32 16 12 C 0.20 4.85 2.70 -68.58 -0.19 4.67 16 13 H 0.05 1.16 4.86 -51.92 -0.25 0.91 16 14 C -0.48 -13.86 6.82 -34.44 -0.23 -14.10 16 15 H 0.11 3.45 6.01 -52.49 -0.32 3.13 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.89 -28.00 13.96 55.43 0.77 -27.23 16 18 Si 0.86 21.62 27.61 -169.99 -4.69 16.92 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.26 -6.44 5.95 56.52 0.34 -6.11 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 25 H 0.07 0.83 4.71 -51.93 -0.24 0.58 16 26 H 0.06 0.61 8.01 -51.93 -0.42 0.19 16 27 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 28 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.06 0.60 8.03 -51.93 -0.42 0.19 16 30 H 0.07 0.91 4.36 -51.93 -0.23 0.68 16 31 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 32 H 0.10 1.30 2.94 -51.93 -0.15 1.15 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.70 7.83 -51.93 -0.41 0.29 16 35 H 0.05 1.07 8.13 -51.93 -0.42 0.65 16 36 H 0.09 1.96 8.14 -51.93 -0.42 1.53 16 37 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 278.69 15.07 4.20 4.20 Total: -1.00 -33.74 278.69 -5.29 -39.03 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.42 Total: 0.78 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 0.66 Total: 0.03 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.27 Total: -40.34 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.31 Total: -20.63 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.69 Total: 16.92 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.74 -5.29 -39.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260011978.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.088 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds