Wall clock time and date at job start Mon Mar 30 2020 04:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47235 * 2 1 4 4 C 1.52997 * 109.47290 * 240.00018 * 2 1 3 5 5 C 1.50697 * 109.46827 * 119.99804 * 2 1 3 6 6 O 1.21278 * 120.00333 * 350.96221 * 5 2 1 7 7 N 1.34781 * 119.99686 * 171.23647 * 5 2 1 8 8 C 1.47148 * 120.98242 * 5.84669 * 7 5 2 9 9 C 1.52879 * 108.60683 * 230.50094 * 8 7 5 10 10 O 1.42964 * 109.30077 * 307.93486 * 9 8 7 11 11 C 1.42967 * 114.16316 * 62.44715 * 10 9 8 12 12 C 1.47152 * 120.98052 * 186.13067 * 7 5 2 13 13 H 1.09001 * 109.67863 * 249.16394 * 12 7 5 14 14 C 1.50705 * 109.68287 * 9.68138 * 12 7 5 15 15 H 1.07995 * 119.99659 * 24.15918 * 14 12 7 16 16 C 1.37878 * 119.99592 * 204.16485 * 14 12 7 17 17 N 1.31514 * 120.00722 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99432 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47250 * 90.00079 * 18 16 14 20 20 H 1.48497 * 109.47170 * 209.99694 * 18 16 14 21 21 H 1.48499 * 109.47596 * 329.99911 * 18 16 14 22 22 H 1.09000 * 109.47319 * 300.00363 * 1 2 3 23 23 H 1.09009 * 109.46949 * 59.99755 * 1 2 3 24 24 H 1.08994 * 109.47534 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47290 * 170.91873 * 3 2 1 26 26 H 1.09000 * 109.46977 * 290.91720 * 3 2 1 27 27 H 1.08997 * 109.46884 * 50.91784 * 3 2 1 28 28 H 1.09011 * 109.46751 * 330.44307 * 4 2 1 29 29 H 1.08997 * 109.47325 * 90.43575 * 4 2 1 30 30 H 1.08991 * 109.47339 * 210.44721 * 4 2 1 31 31 H 1.09002 * 109.67999 * 350.28114 * 8 7 5 32 32 H 1.08997 * 109.68371 * 110.83343 * 8 7 5 33 33 H 1.09002 * 109.58177 * 187.92124 * 9 8 7 34 34 H 1.09001 * 109.41118 * 67.84474 * 9 8 7 35 35 H 1.09003 * 109.50762 * 177.49590 * 11 10 9 36 36 H 1.08996 * 109.55444 * 57.37296 * 11 10 9 37 37 H 0.96992 * 120.00524 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0322 -0.7104 1.2305 6 8 1.2564 -1.0262 2.1075 7 7 3.3445 -0.9898 1.3588 8 6 4.3229 -0.5007 0.3745 9 6 5.1863 -1.6772 -0.0811 10 8 5.7182 -2.3449 1.0657 11 6 4.7266 -2.9159 1.9227 12 6 3.8403 -1.7982 2.4840 13 1 4.4236 -1.1706 3.1579 14 6 2.6763 -2.3985 3.2295 15 1 1.7314 -2.5451 2.7275 16 6 2.8177 -2.7603 4.5524 17 7 3.9685 -2.5821 5.1636 18 14 1.3746 -3.5037 5.4767 19 1 1.3995 -4.9810 5.3279 20 1 1.4729 -3.1494 6.9154 21 1 0.1042 -2.9717 4.9216 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1178 1.4468 0.1622 26 1 1.8152 1.9073 -0.9599 27 1 1.5503 2.0010 0.7977 28 1 1.3182 -1.4806 -1.5505 29 1 2.1685 -0.0013 -2.0574 30 1 2.9963 -1.1958 -1.0298 31 1 3.8003 -0.0766 -0.4829 32 1 4.9555 0.2597 0.8323 33 1 6.0045 -1.3112 -0.7014 34 1 4.5760 -2.3729 -0.6570 35 1 5.2141 -3.4412 2.7440 36 1 4.1137 -3.6164 1.3554 37 1 4.0681 -2.8370 6.0941 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260011984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:04 Heat of formation + Delta-G solvation = -48.264460 kcal Electronic energy + Delta-G solvation = -19134.052102 eV Core-core repulsion = 16299.019278 eV Total energy + Delta-G solvation = -2835.032824 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.07722 -37.58883 -35.45569 -33.87431 -32.68732 -30.20613 -27.43399 -27.07385 -26.93867 -24.85657 -22.67113 -22.47901 -20.03987 -18.10477 -16.81511 -15.77090 -15.48913 -15.40213 -14.53053 -14.38685 -14.35850 -14.04577 -13.61424 -13.33832 -13.07516 -12.25488 -12.09029 -11.89672 -11.79275 -11.60213 -11.43285 -11.16647 -10.93404 -10.84064 -10.69104 -10.58475 -10.44353 -10.17986 -9.85209 -9.41325 -9.15526 -8.54239 -7.72973 -7.24208 -5.97046 -3.90039 3.38688 3.45378 3.56936 3.61229 3.90342 4.50567 4.64208 4.92508 5.01509 5.16319 5.33649 5.40806 5.48066 5.53346 5.59041 5.69637 5.78159 5.85074 5.96645 6.01828 6.06090 6.11411 6.22324 6.28669 6.40333 6.47675 6.55926 6.69906 6.90985 7.39598 7.62832 7.85898 8.10773 8.15089 8.69516 9.18426 9.34000 9.71646 11.13409 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021927 B = 0.011026 C = 0.008052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.636065 B = 2538.781959 C = 3476.485538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.097 4.097 3 C -0.142 4.142 4 C -0.161 4.161 5 C 0.515 3.485 6 O -0.496 6.496 7 N -0.609 5.609 8 C 0.051 3.949 9 C 0.050 3.950 10 O -0.397 6.397 11 C 0.060 3.940 12 C 0.239 3.761 13 H 0.055 0.945 14 C -0.499 4.499 15 H 0.102 0.898 16 C 0.055 3.945 17 N -0.904 5.904 18 Si 0.901 3.099 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.270 1.270 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.102 0.898 36 H 0.036 0.964 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 5.130 -13.076 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 C -0.200 4.200 4 C -0.218 4.218 5 C 0.301 3.699 6 O -0.370 6.370 7 N -0.343 5.343 8 C -0.072 4.072 9 C -0.028 4.028 10 O -0.316 6.316 11 C -0.017 4.017 12 C 0.138 3.862 13 H 0.073 0.927 14 C -0.537 4.537 15 H 0.119 0.881 16 C -0.145 4.145 17 N -0.544 5.544 18 Si 0.729 3.271 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.195 1.195 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.120 0.880 36 H 0.054 0.946 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.896 4.911 -12.350 13.321 hybrid contribution -0.814 -0.307 0.513 1.010 sum -1.711 4.605 -11.837 12.816 Atomic orbital electron populations 1.21632 0.92681 1.02334 1.01299 1.20937 0.97561 0.96391 0.95216 1.22021 1.01760 0.94233 1.01966 1.22402 1.02632 1.00631 0.96168 1.20201 0.82349 0.80044 0.87326 1.90728 1.55785 1.49582 1.40917 1.48442 1.05576 1.53116 1.27205 1.22745 0.92784 0.97440 0.94279 1.22730 0.97292 0.93750 0.89075 1.87878 1.34702 1.73002 1.35990 1.23457 0.89699 0.96374 0.92147 1.19736 0.94938 0.88686 0.82796 0.92710 1.21916 0.98049 1.37932 0.95834 0.88109 1.24985 0.95886 0.96099 0.97555 1.69957 1.23857 1.48784 1.11816 0.86427 0.83367 0.78809 0.78486 1.21001 1.21555 1.19503 0.91963 0.92945 0.92347 0.91764 0.92180 0.92208 0.92286 0.92106 0.90458 0.88099 0.91818 0.89235 0.93702 0.87971 0.94602 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 7.63 37.16 0.28 -1.52 16 2 C -0.10 -1.51 0.75 -155.66 -0.12 -1.62 16 3 C -0.14 -1.86 8.09 37.16 0.30 -1.56 16 4 C -0.16 -2.06 7.93 37.16 0.29 -1.77 16 5 C 0.51 10.96 6.29 -10.99 -0.07 10.89 16 6 O -0.50 -12.85 12.02 5.56 0.07 -12.78 16 7 N -0.61 -12.94 2.94 -166.31 -0.49 -13.43 16 8 C 0.05 0.83 4.12 -3.75 -0.02 0.82 16 9 C 0.05 0.79 6.69 37.10 0.25 1.04 16 10 O -0.40 -8.20 10.74 -35.23 -0.38 -8.58 16 11 C 0.06 1.40 6.27 37.31 0.23 1.63 16 12 C 0.24 6.10 3.01 -68.57 -0.21 5.89 16 13 H 0.06 1.59 7.64 -51.93 -0.40 1.19 16 14 C -0.50 -14.22 6.73 -34.44 -0.23 -14.45 16 15 H 0.10 3.01 5.10 -54.35 -0.28 2.73 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.70 12.97 55.43 0.72 -25.98 16 18 Si 0.90 22.91 29.54 -169.99 -5.02 17.89 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 22 H 0.06 1.00 8.00 -51.93 -0.42 0.58 16 23 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 24 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 25 H 0.06 0.83 5.57 -51.93 -0.29 0.54 16 26 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 27 H 0.06 0.83 8.12 -51.93 -0.42 0.40 16 28 H 0.06 0.74 7.81 -51.92 -0.41 0.34 16 29 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.08 1.04 3.61 -51.93 -0.19 0.85 16 31 H 0.10 1.32 3.17 -51.93 -0.16 1.16 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.04 0.68 7.30 -51.93 -0.38 0.30 16 35 H 0.10 2.55 8.14 -51.93 -0.42 2.12 16 36 H 0.04 0.82 8.13 -51.93 -0.42 0.40 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 281.49 15.07 4.24 4.24 Total: -1.00 -32.22 281.49 -5.65 -37.87 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.41 Total: -0.09 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 0.63 Total: 0.85 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.23 Total: -39.41 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.31 Total: -21.36 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.22 -5.65 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260011984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.392 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds