Wall clock time and date at job start Mon Mar 30 2020 04:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47235 * 2 1 4 4 C 1.52997 * 109.47290 * 240.00018 * 2 1 3 5 5 C 1.50697 * 109.46827 * 119.99804 * 2 1 3 6 6 O 1.21278 * 120.00333 * 350.96221 * 5 2 1 7 7 N 1.34781 * 119.99686 * 171.23647 * 5 2 1 8 8 C 1.47148 * 120.98242 * 5.84669 * 7 5 2 9 9 C 1.52879 * 108.60683 * 230.50094 * 8 7 5 10 10 O 1.42964 * 109.30077 * 307.93486 * 9 8 7 11 11 C 1.42967 * 114.16316 * 62.44715 * 10 9 8 12 12 C 1.47152 * 120.98052 * 186.13067 * 7 5 2 13 13 H 1.09001 * 109.67863 * 249.16394 * 12 7 5 14 14 C 1.50705 * 109.68287 * 9.68138 * 12 7 5 15 15 H 1.07995 * 119.99659 * 24.15918 * 14 12 7 16 16 C 1.37878 * 119.99592 * 204.16485 * 14 12 7 17 17 N 1.31514 * 120.00722 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99432 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47250 * 90.00079 * 18 16 14 20 20 H 1.48497 * 109.47170 * 209.99694 * 18 16 14 21 21 H 1.48499 * 109.47596 * 329.99911 * 18 16 14 22 22 H 1.09000 * 109.47319 * 300.00363 * 1 2 3 23 23 H 1.09009 * 109.46949 * 59.99755 * 1 2 3 24 24 H 1.08994 * 109.47534 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47290 * 170.91873 * 3 2 1 26 26 H 1.09000 * 109.46977 * 290.91720 * 3 2 1 27 27 H 1.08997 * 109.46884 * 50.91784 * 3 2 1 28 28 H 1.09011 * 109.46751 * 330.44307 * 4 2 1 29 29 H 1.08997 * 109.47325 * 90.43575 * 4 2 1 30 30 H 1.08991 * 109.47339 * 210.44721 * 4 2 1 31 31 H 1.09002 * 109.67999 * 350.28114 * 8 7 5 32 32 H 1.08997 * 109.68371 * 110.83343 * 8 7 5 33 33 H 1.09002 * 109.58177 * 187.92124 * 9 8 7 34 34 H 1.09001 * 109.41118 * 67.84474 * 9 8 7 35 35 H 1.09003 * 109.50762 * 177.49590 * 11 10 9 36 36 H 1.08996 * 109.55444 * 57.37296 * 11 10 9 37 37 H 0.96992 * 120.00524 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0322 -0.7104 1.2305 6 8 1.2564 -1.0262 2.1075 7 7 3.3445 -0.9898 1.3588 8 6 4.3229 -0.5007 0.3745 9 6 5.1863 -1.6772 -0.0811 10 8 5.7182 -2.3449 1.0657 11 6 4.7266 -2.9159 1.9227 12 6 3.8403 -1.7982 2.4840 13 1 4.4236 -1.1706 3.1579 14 6 2.6763 -2.3985 3.2295 15 1 1.7314 -2.5451 2.7275 16 6 2.8177 -2.7603 4.5524 17 7 3.9685 -2.5821 5.1636 18 14 1.3746 -3.5037 5.4767 19 1 1.3995 -4.9810 5.3279 20 1 1.4729 -3.1494 6.9154 21 1 0.1042 -2.9717 4.9216 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1178 1.4468 0.1622 26 1 1.8152 1.9073 -0.9599 27 1 1.5503 2.0010 0.7977 28 1 1.3182 -1.4806 -1.5505 29 1 2.1685 -0.0013 -2.0574 30 1 2.9963 -1.1958 -1.0298 31 1 3.8003 -0.0766 -0.4829 32 1 4.9555 0.2597 0.8323 33 1 6.0045 -1.3112 -0.7014 34 1 4.5760 -2.3729 -0.6570 35 1 5.2141 -3.4412 2.7440 36 1 4.1137 -3.6164 1.3554 37 1 4.0681 -2.8370 6.0941 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260011984.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:04 Heat of formation + Delta-G solvation = -71.552520 kcal Electronic energy + Delta-G solvation = -19135.061948 eV Core-core repulsion = 16299.019278 eV Total energy + Delta-G solvation = -2836.042670 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.64609 -39.19330 -36.93813 -35.63770 -34.60236 -31.96925 -29.05952 -28.15961 -28.09848 -26.84936 -24.35756 -23.97751 -21.61161 -19.75708 -18.72149 -17.28965 -17.21389 -16.91603 -16.33977 -16.07122 -15.83010 -15.57061 -15.07823 -14.91747 -14.58044 -13.86586 -13.65263 -13.25658 -13.17442 -12.96626 -12.85078 -12.76532 -12.63359 -12.48836 -12.24659 -12.05851 -11.97310 -11.79304 -11.33294 -11.23111 -10.90695 -10.69057 -9.55960 -9.07467 -8.16947 -6.13470 1.33377 1.36003 1.50531 2.00329 2.28421 2.45465 3.05639 3.19229 3.62238 3.90584 4.00219 4.07118 4.21927 4.26926 4.38159 4.44351 4.67571 4.72695 4.76078 4.78208 4.84171 4.88809 4.95955 5.02687 5.05334 5.15336 5.23016 5.36948 5.40587 5.43657 5.69004 5.92117 6.00639 6.39930 6.93092 7.00069 7.42863 7.71983 8.93499 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021927 B = 0.011026 C = 0.008052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.636065 B = 2538.781959 C = 3476.485538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.159 4.159 5 C 0.500 3.500 6 O -0.557 6.557 7 N -0.615 5.615 8 C 0.048 3.952 9 C 0.041 3.959 10 O -0.408 6.408 11 C 0.081 3.919 12 C 0.240 3.760 13 H 0.011 0.989 14 C -0.506 4.506 15 H 0.087 0.913 16 C 0.005 3.995 17 N -0.932 5.932 18 Si 0.956 3.044 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.039 0.961 23 H 0.093 0.907 24 H 0.040 0.960 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.143 0.857 32 H 0.065 0.935 33 H 0.137 0.863 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 6.121 -16.288 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.092 4.092 3 C -0.198 4.198 4 C -0.216 4.216 5 C 0.289 3.711 6 O -0.435 6.435 7 N -0.348 5.348 8 C -0.074 4.074 9 C -0.036 4.036 10 O -0.327 6.327 11 C 0.003 3.997 12 C 0.138 3.862 13 H 0.028 0.972 14 C -0.544 4.544 15 H 0.104 0.896 16 C -0.192 4.192 17 N -0.574 5.574 18 Si 0.783 3.217 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.058 0.942 23 H 0.112 0.888 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.160 0.840 32 H 0.083 0.917 33 H 0.155 0.845 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.879 5.914 -15.609 16.715 hybrid contribution -0.802 -0.516 1.411 1.703 sum -1.682 5.398 -14.198 15.283 Atomic orbital electron populations 1.21642 0.92354 1.01545 1.02196 1.20946 0.97798 0.97405 0.93097 1.22061 1.01547 0.92268 1.03886 1.22412 1.02040 1.01507 0.95598 1.21402 0.81738 0.79220 0.88753 1.90679 1.57020 1.52185 1.43585 1.48443 1.06897 1.52551 1.26940 1.23098 0.92184 0.97741 0.94355 1.23172 0.99236 0.93464 0.87744 1.87846 1.34199 1.73431 1.37235 1.22889 0.89429 0.95312 0.92041 1.19366 0.93897 0.89027 0.83939 0.97163 1.22110 0.98388 1.37512 0.96372 0.89564 1.25683 0.98045 0.96940 0.98560 1.70059 1.25222 1.50168 1.11966 0.85577 0.79966 0.78786 0.77413 1.19433 1.20891 1.20864 0.94209 0.88788 0.94069 0.91583 0.87847 0.93729 0.92172 0.87758 0.91092 0.83991 0.91673 0.84550 0.92425 0.90618 0.94405 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.33 7.63 71.98 0.55 -2.78 16 2 C -0.09 -2.52 0.75 -52.93 -0.04 -2.56 16 3 C -0.14 -3.14 8.09 71.98 0.58 -2.56 16 4 C -0.16 -3.32 7.93 71.98 0.57 -2.75 16 5 C 0.50 21.30 6.29 87.66 0.55 21.86 16 6 O -0.56 -29.96 12.02 -3.02 -0.04 -30.00 16 7 N -0.61 -26.08 2.94 -798.47 -2.35 -28.43 16 8 C 0.05 1.43 4.12 86.22 0.35 1.79 16 9 C 0.04 1.16 6.69 71.94 0.48 1.64 16 10 O -0.41 -16.45 10.74 -148.98 -1.60 -18.05 16 11 C 0.08 3.85 6.27 72.08 0.45 4.31 16 12 C 0.24 12.72 3.01 44.22 0.13 12.85 16 13 H 0.01 0.64 7.64 -2.39 -0.02 0.62 16 14 C -0.51 -30.03 6.73 25.60 0.17 -29.86 16 15 H 0.09 5.39 5.10 -32.42 -0.17 5.22 16 16 C 0.00 0.29 5.46 84.65 0.46 0.76 16 17 N -0.93 -57.31 12.97 21.45 0.28 -57.03 16 18 Si 0.96 48.69 29.54 68.60 2.03 50.72 16 19 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.28 -14.87 7.11 99.48 0.71 -14.16 16 22 H 0.04 1.26 8.00 -2.39 -0.02 1.24 16 23 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 24 H 0.04 1.26 8.11 -2.39 -0.02 1.24 16 25 H 0.07 1.45 5.57 -2.39 -0.01 1.44 16 26 H 0.10 1.48 7.89 -2.39 -0.02 1.46 16 27 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 28 H 0.06 1.28 7.81 -2.38 -0.02 1.26 16 29 H 0.10 1.34 7.66 -2.39 -0.02 1.32 16 30 H 0.07 1.59 3.61 -2.39 -0.01 1.58 16 31 H 0.14 3.06 3.17 -2.39 -0.01 3.05 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.06 1.54 7.30 -2.39 -0.02 1.52 16 35 H 0.08 3.95 8.14 -2.39 -0.02 3.93 16 36 H 0.04 1.75 8.13 -2.39 -0.02 1.74 16 37 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -75.68 281.49 3.50 -72.19 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.91 Total: 7.91 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 4.27 Total: 2.69 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -2.07 Total: -85.46 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -1.64 Total: -48.05 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.03 Total: 50.72 kcal Total: -75.68 3.50 -72.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260011984.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.634 kcal (2) G-P(sol) polarization free energy of solvation -75.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds