Wall clock time and date at job start Mon Mar 30 2020 03:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48505 * 109.46857 * 239.99993 * 3 2 1 5 5 H 1.48499 * 109.47243 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47477 * 119.99992 * 3 2 1 7 7 C 1.37877 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99761 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00152 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47306 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.64255 * 303.29046 * 10 9 7 12 12 C 1.54446 * 110.72805 * 179.97438 * 10 9 7 13 13 O 1.43891 * 105.08067 * 219.84685 * 12 10 9 14 14 C 1.43778 * 107.10598 * 358.29581 * 13 12 10 15 15 H 1.08996 * 110.16833 * 265.87808 * 14 13 12 16 16 C 1.53005 * 110.11499 * 144.25945 * 14 13 12 17 17 C 1.52997 * 109.47055 * 68.25384 * 16 14 13 18 18 H 1.09002 * 110.27643 * 305.70441 * 17 16 14 19 19 C 1.54598 * 110.39179 * 183.55452 * 17 16 14 20 20 C 1.54932 * 102.92273 * 219.08302 * 19 17 16 21 21 N 1.48539 * 103.22489 * 37.41993 * 20 19 17 22 22 C 1.47897 * 105.81843 * 320.78612 * 21 20 19 23 23 O 1.44391 * 106.17062 * 25.08361 * 14 13 12 24 24 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47173 * 59.99730 * 9 7 2 26 26 H 1.09000 * 109.46796 * 299.99712 * 9 7 2 27 27 H 1.08997 * 110.32481 * 338.75683 * 12 10 9 28 28 H 1.09003 * 110.32080 * 100.84873 * 12 10 9 29 29 H 1.09001 * 109.46604 * 308.25835 * 16 14 13 30 30 H 1.08998 * 109.47306 * 188.25816 * 16 14 13 31 31 H 1.08994 * 110.72376 * 337.44853 * 19 17 16 32 32 H 1.09002 * 110.71797 * 100.72760 * 19 17 16 33 33 H 1.08999 * 110.67033 * 278.98382 * 20 19 17 34 34 H 1.09005 * 110.81115 * 155.91631 * 20 19 17 35 35 H 1.00898 * 110.99418 * 200.27663 * 21 20 19 36 36 H 1.08997 * 109.92227 * 265.97847 * 22 21 20 37 37 H 1.09000 * 110.07910 * 144.77476 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0005 11 1 2.9204 -3.5905 -0.8521 12 6 1.5023 -5.0163 0.0012 13 8 2.2578 -5.8573 0.8914 14 6 3.3813 -5.0861 1.3500 15 1 4.2510 -5.2790 0.7220 16 6 3.6975 -5.4321 2.8065 17 6 4.2301 -6.8642 2.8864 18 1 3.5299 -7.5544 2.4158 19 6 4.4729 -7.2672 4.3591 20 6 5.7859 -8.0860 4.2822 21 7 6.5777 -7.3630 3.2542 22 6 5.6105 -6.9596 2.2105 23 8 2.9888 -3.7007 1.2427 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 0.4851 -4.8899 0.3718 28 1 1.4886 -5.4410 -1.0026 29 1 2.7905 -5.3478 3.4051 30 1 4.4504 -4.7426 3.1885 31 1 4.6051 -6.3840 4.9839 32 1 3.6546 -7.8844 4.7299 33 1 5.5836 -9.1085 3.9631 34 1 6.3035 -8.0790 5.2415 35 1 7.2981 -7.9556 2.8699 36 1 5.5852 -7.7079 1.4185 37 1 5.8891 -5.9905 1.7967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260049673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:00 Heat of formation + Delta-G solvation = -104.293008 kcal Electronic energy + Delta-G solvation = -17636.096346 eV Core-core repulsion = 14798.633942 eV Total energy + Delta-G solvation = -2837.462404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.91904 -38.54616 -34.53958 -33.45514 -32.64553 -30.57674 -29.44450 -27.14301 -26.01113 -23.21685 -22.60077 -21.30451 -20.70638 -19.53228 -17.16714 -16.88645 -16.10409 -15.72851 -15.67143 -14.77116 -14.60574 -14.21802 -13.74572 -13.46363 -12.95057 -12.49236 -12.35670 -12.30198 -11.93273 -11.77964 -11.68012 -11.45890 -11.15386 -10.96341 -10.78840 -10.60244 -10.56239 -10.48749 -9.79995 -9.33567 -9.19503 -9.05691 -8.70096 -8.38932 -6.01875 -4.03247 3.35323 3.38980 3.42794 4.04973 4.12176 4.27517 4.46161 4.63199 4.66892 4.94626 5.12081 5.24751 5.27235 5.33350 5.35908 5.43431 5.52987 5.57343 5.70609 5.74689 5.78456 5.88990 5.95115 6.01111 6.13244 6.28277 6.34073 6.44291 6.65230 6.78794 7.12613 7.35138 7.53417 7.76844 7.94831 8.34868 9.00382 9.60045 11.09718 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036818 B = 0.004822 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.314422 B = 5805.730765 C = 6208.201092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.056 3.944 11 H 0.069 0.931 12 C 0.022 3.978 13 O -0.396 6.396 14 C 0.222 3.778 15 H 0.063 0.937 16 C -0.106 4.106 17 C -0.093 4.093 18 H 0.082 0.918 19 C -0.119 4.119 20 C 0.037 3.963 21 N -0.673 5.673 22 C 0.039 3.961 23 O -0.356 6.356 24 H 0.262 0.738 25 H 0.035 0.965 26 H 0.029 0.971 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.335 0.665 36 H 0.040 0.960 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.528 -15.628 4.631 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.001 4.001 11 H 0.087 0.913 12 C -0.055 4.055 13 O -0.317 6.317 14 C 0.126 3.874 15 H 0.080 0.920 16 C -0.144 4.144 17 C -0.112 4.112 18 H 0.101 0.899 19 C -0.157 4.157 20 C -0.093 4.093 21 N -0.302 5.302 22 C -0.090 4.090 23 O -0.276 6.276 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.150 0.850 36 H 0.058 0.942 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.422 -14.884 5.183 17.869 hybrid contribution 0.247 0.085 -0.759 0.803 sum 8.669 -14.799 4.423 17.712 Atomic orbital electron populations 1.69944 1.06051 1.26866 1.50856 1.24992 0.94866 0.99317 0.95241 0.86593 0.79528 0.82832 0.78698 1.20244 1.21295 1.20140 1.21060 0.93162 0.90429 1.50539 0.92386 1.19204 0.92863 0.90465 0.98376 1.24106 0.93841 0.96088 0.86087 0.91282 1.24132 0.96978 0.90768 0.93611 1.88764 1.39943 1.38717 1.64314 1.24263 0.89226 0.78598 0.95305 0.91956 1.21713 1.02397 0.95647 0.94646 1.21931 0.96117 0.97297 0.95900 0.89942 1.22558 0.96504 1.00278 0.96387 1.23037 0.94340 0.95326 0.96554 1.63061 1.12303 1.42156 1.12671 1.22830 0.91550 1.01201 0.93423 1.89596 1.72349 1.23719 1.41904 0.92868 0.94708 0.95264 0.90010 0.90886 0.90311 0.89640 0.90401 0.90996 0.94286 0.90190 0.85004 0.94153 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.70 8.96 -34.44 -0.31 -15.01 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.03 0.72 4.63 -27.88 -0.13 0.59 16 10 C 0.06 1.19 3.36 -25.97 -0.09 1.11 16 11 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 12 C 0.02 0.39 7.66 37.92 0.29 0.68 16 13 O -0.40 -7.05 10.92 -59.28 -0.65 -7.70 16 14 C 0.22 3.83 3.75 37.16 0.14 3.97 16 15 H 0.06 1.00 6.89 -51.93 -0.36 0.64 16 16 C -0.11 -1.56 4.51 -26.73 -0.12 -1.68 16 17 C -0.09 -1.12 2.96 -89.26 -0.26 -1.39 16 18 H 0.08 1.03 7.87 -51.93 -0.41 0.62 16 19 C -0.12 -1.23 6.61 -24.87 -0.16 -1.39 16 20 C 0.04 0.34 7.55 -1.90 -0.01 0.32 16 21 N -0.67 -7.01 7.51 -110.08 -0.83 -7.84 16 22 C 0.04 0.44 6.65 -2.75 -0.02 0.42 16 23 O -0.36 -7.79 11.07 -59.28 -0.66 -8.45 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.48 7.85 -51.93 -0.41 1.07 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.33 2.83 8.92 -39.29 -0.35 2.48 16 36 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 1.01 6.87 -51.93 -0.36 0.65 16 LS Contribution 299.46 15.07 4.51 4.51 Total: -1.00 -31.08 299.46 -8.73 -39.81 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.06 Total: -0.28 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.77 Total: -10.84 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: -0.09 Total: -34.00 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.30 Total: -16.14 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.08 -8.73 -39.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.479 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds