Wall clock time and date at job start Mon Mar 30 2020 03:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48505 * 109.46857 * 239.99993 * 3 2 1 5 5 H 1.48499 * 109.47243 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47477 * 119.99992 * 3 2 1 7 7 C 1.37877 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99761 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00152 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47306 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.64255 * 303.29046 * 10 9 7 12 12 C 1.54446 * 110.72805 * 179.97438 * 10 9 7 13 13 O 1.43891 * 105.08067 * 219.84685 * 12 10 9 14 14 C 1.43778 * 107.10598 * 358.29581 * 13 12 10 15 15 H 1.08996 * 110.16833 * 265.87808 * 14 13 12 16 16 C 1.53005 * 110.11499 * 144.25945 * 14 13 12 17 17 C 1.52997 * 109.47055 * 68.25384 * 16 14 13 18 18 H 1.09002 * 110.27643 * 305.70441 * 17 16 14 19 19 C 1.54598 * 110.39179 * 183.55452 * 17 16 14 20 20 C 1.54932 * 102.92273 * 219.08302 * 19 17 16 21 21 N 1.48539 * 103.22489 * 37.41993 * 20 19 17 22 22 C 1.47897 * 105.81843 * 320.78612 * 21 20 19 23 23 O 1.44391 * 106.17062 * 25.08361 * 14 13 12 24 24 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47173 * 59.99730 * 9 7 2 26 26 H 1.09000 * 109.46796 * 299.99712 * 9 7 2 27 27 H 1.08997 * 110.32481 * 338.75683 * 12 10 9 28 28 H 1.09003 * 110.32080 * 100.84873 * 12 10 9 29 29 H 1.09001 * 109.46604 * 308.25835 * 16 14 13 30 30 H 1.08998 * 109.47306 * 188.25816 * 16 14 13 31 31 H 1.08994 * 110.72376 * 337.44853 * 19 17 16 32 32 H 1.09002 * 110.71797 * 100.72760 * 19 17 16 33 33 H 1.08999 * 110.67033 * 278.98382 * 20 19 17 34 34 H 1.09005 * 110.81115 * 155.91631 * 20 19 17 35 35 H 1.00898 * 110.99418 * 200.27663 * 21 20 19 36 36 H 1.08997 * 109.92227 * 265.97847 * 22 21 20 37 37 H 1.09000 * 110.07910 * 144.77476 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0005 11 1 2.9204 -3.5905 -0.8521 12 6 1.5023 -5.0163 0.0012 13 8 2.2578 -5.8573 0.8914 14 6 3.3813 -5.0861 1.3500 15 1 4.2510 -5.2790 0.7220 16 6 3.6975 -5.4321 2.8065 17 6 4.2301 -6.8642 2.8864 18 1 3.5299 -7.5544 2.4158 19 6 4.4729 -7.2672 4.3591 20 6 5.7859 -8.0860 4.2822 21 7 6.5777 -7.3630 3.2542 22 6 5.6105 -6.9596 2.2105 23 8 2.9888 -3.7007 1.2427 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 0.4851 -4.8899 0.3718 28 1 1.4886 -5.4410 -1.0026 29 1 2.7905 -5.3478 3.4051 30 1 4.4504 -4.7426 3.1885 31 1 4.6051 -6.3840 4.9839 32 1 3.6546 -7.8844 4.7299 33 1 5.5836 -9.1085 3.9631 34 1 6.3035 -8.0790 5.2415 35 1 7.2981 -7.9556 2.8699 36 1 5.5852 -7.7079 1.4185 37 1 5.8891 -5.9905 1.7967 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260049673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:00 Heat of formation + Delta-G solvation = -126.223446 kcal Electronic energy + Delta-G solvation = -17637.047321 eV Core-core repulsion = 14798.633942 eV Total energy + Delta-G solvation = -2838.413380 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.37594 -39.48451 -36.17706 -35.26181 -34.06977 -32.23816 -30.36300 -28.73629 -27.36300 -25.10867 -23.82432 -22.45020 -22.09055 -20.64688 -18.86055 -17.98541 -17.76811 -17.17112 -17.13834 -16.48985 -15.87924 -15.72389 -14.73819 -14.57010 -14.36050 -14.21152 -13.85491 -13.59680 -13.21754 -13.13892 -13.10638 -12.96347 -12.60904 -12.51989 -12.36645 -12.09198 -11.80478 -11.65346 -11.52511 -11.19721 -11.00771 -10.61474 -10.55913 -9.46732 -8.22455 -6.31969 1.39464 1.42738 1.50640 2.40228 2.60362 2.94734 3.13097 3.34710 3.66414 3.73511 3.76864 3.91809 3.97639 4.08347 4.14939 4.35870 4.40441 4.54209 4.55808 4.59709 4.69112 4.80583 4.87947 4.94291 4.98114 5.07617 5.14409 5.24575 5.28592 5.34447 5.48838 5.73419 5.83951 6.08065 6.20562 6.44823 6.79259 7.35852 8.89291 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036818 B = 0.004822 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.314422 B = 5805.730765 C = 6208.201092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.032 3.968 10 C 0.058 3.942 11 H 0.080 0.920 12 C 0.029 3.971 13 O -0.395 6.395 14 C 0.218 3.782 15 H 0.081 0.919 16 C -0.101 4.101 17 C -0.088 4.088 18 H 0.080 0.920 19 C -0.120 4.120 20 C 0.040 3.960 21 N -0.684 5.684 22 C 0.041 3.959 23 O -0.389 6.389 24 H 0.265 0.735 25 H 0.025 0.975 26 H -0.002 1.002 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.347 0.653 36 H 0.051 0.949 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.889 -16.536 4.626 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.073 0.927 9 C -0.005 4.005 10 C 0.001 3.999 11 H 0.097 0.903 12 C -0.047 4.047 13 O -0.317 6.317 14 C 0.124 3.876 15 H 0.098 0.902 16 C -0.139 4.139 17 C -0.108 4.108 18 H 0.098 0.902 19 C -0.158 4.158 20 C -0.089 4.089 21 N -0.315 5.315 22 C -0.089 4.089 23 O -0.310 6.310 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.016 0.984 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.163 0.837 36 H 0.070 0.930 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.797 -15.815 5.175 19.310 hybrid contribution -0.182 0.338 -0.729 0.824 sum 9.615 -15.477 4.446 18.755 Atomic orbital electron populations 1.70060 1.07586 1.27968 1.51523 1.25893 0.95781 1.03136 0.94652 0.85517 0.78331 0.78237 0.79079 1.18897 1.20498 1.19841 1.21429 0.93278 0.91977 1.50670 0.92710 1.19029 0.93313 0.91819 0.96323 1.23913 0.93455 0.96062 0.86496 0.90258 1.24080 0.96146 0.89126 0.95351 1.88753 1.40159 1.38395 1.64408 1.24591 0.89330 0.76482 0.97230 0.90162 1.21701 1.01876 0.97528 0.92768 1.21874 0.96401 0.95092 0.97388 0.90154 1.22578 0.97780 1.00448 0.94956 1.23069 0.93489 0.95590 0.96763 1.63029 1.12598 1.43144 1.12702 1.22752 0.91187 1.00990 0.93938 1.89553 1.72704 1.26684 1.42034 0.92611 0.95638 0.98402 0.90594 0.87551 0.91435 0.90022 0.91182 0.89752 0.92893 0.89150 0.83702 0.93034 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.11 8.96 25.60 0.23 -30.88 16 8 H 0.05 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.03 1.70 4.63 29.85 0.14 1.84 16 10 C 0.06 2.47 3.36 31.09 0.10 2.57 16 11 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 12 C 0.03 1.03 7.66 72.47 0.56 1.58 16 13 O -0.40 -13.58 10.92 -125.98 -1.38 -14.95 16 14 C 0.22 7.39 3.75 71.98 0.27 7.66 16 15 H 0.08 2.45 6.89 -2.39 -0.02 2.43 16 16 C -0.10 -2.92 4.51 30.60 0.14 -2.78 16 17 C -0.09 -1.99 2.96 -9.91 -0.03 -2.02 16 18 H 0.08 1.86 7.87 -2.39 -0.02 1.85 16 19 C -0.12 -2.25 6.61 31.80 0.21 -2.04 16 20 C 0.04 0.63 7.55 86.65 0.65 1.29 16 21 N -0.68 -12.79 7.51 -502.20 -3.77 -16.57 16 22 C 0.04 0.85 6.65 86.45 0.57 1.42 16 23 O -0.39 -17.15 11.07 -125.98 -1.39 -18.54 16 24 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.08 2.73 7.85 -2.39 -0.02 2.72 16 28 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 31 H 0.07 1.43 7.87 -2.39 -0.02 1.41 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.35 5.05 8.92 -89.70 -0.80 4.25 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.60 6.87 -2.39 -0.02 1.59 16 Total: -1.00 -66.38 299.46 -0.68 -67.06 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.24 Total: 12.95 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 3.31 Total: -20.71 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -3.49 Total: -72.88 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -2.77 Total: -33.49 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -66.38 -0.68 -67.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.164 kcal (2) G-P(sol) polarization free energy of solvation -66.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds