Wall clock time and date at job start Mon Mar 30 2020 03:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48497 * 109.47486 * 270.00489 * 3 2 1 5 5 H 1.48505 * 109.47164 * 30.00657 * 3 2 1 6 6 H 1.48499 * 109.47123 * 150.00198 * 3 2 1 7 7 C 1.37877 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00236 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47256 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.27843 * 305.70069 * 10 9 7 12 12 C 1.54458 * 110.31866 * 183.58676 * 10 9 7 13 13 O 1.45002 * 102.81457 * 219.36270 * 12 10 9 14 14 C 1.44388 * 103.29453 * 36.50340 * 13 12 10 15 15 H 1.08999 * 110.11814 * 80.01141 * 14 13 12 16 16 C 1.52996 * 110.11358 * 201.65709 * 14 13 12 17 17 C 1.53001 * 109.47138 * 291.74008 * 16 14 13 18 18 H 1.08994 * 110.64582 * 305.70069 * 17 16 14 19 19 C 1.54602 * 110.72633 * 182.54735 * 17 16 14 20 20 C 1.53982 * 105.14146 * 219.68693 * 19 17 16 21 21 N 1.47910 * 107.05966 * 358.77434 * 20 19 17 22 22 C 1.48731 * 105.94084 * 25.20176 * 21 20 19 23 23 O 1.43786 * 106.16925 * 320.82980 * 14 13 12 24 24 H 0.97002 * 119.99503 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47243 * 60.00713 * 9 7 2 26 26 H 1.08999 * 109.47306 * 300.00056 * 9 7 2 27 27 H 1.09002 * 110.72696 * 337.65223 * 12 10 9 28 28 H 1.08997 * 110.72862 * 100.94647 * 12 10 9 29 29 H 1.09008 * 109.47528 * 51.74214 * 16 14 13 30 30 H 1.09002 * 109.47462 * 171.74192 * 16 14 13 31 31 H 1.09002 * 110.30571 * 338.60215 * 19 17 16 32 32 H 1.09002 * 110.30656 * 100.66520 * 19 17 16 33 33 H 1.08997 * 109.92100 * 118.12616 * 20 19 17 34 34 H 1.09005 * 109.91937 * 239.22661 * 20 19 17 35 35 H 1.00905 * 110.99390 * 264.81965 * 21 20 19 36 36 H 1.08998 * 110.83401 * 202.57592 * 22 21 20 37 37 H 1.09005 * 110.58144 * 79.38408 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 1 2.9442 -3.5616 -0.8309 12 6 1.4948 -5.0092 -0.0912 13 8 2.2501 -5.8592 0.8087 14 6 2.6261 -4.9619 1.8757 15 1 1.7916 -4.8272 2.5638 16 6 3.8416 -5.5137 2.6233 17 6 3.4405 -6.7779 3.3861 18 1 2.5863 -6.5811 4.0339 19 6 4.6330 -7.3248 4.2041 20 6 4.5535 -8.8555 4.0568 21 7 3.3642 -9.1505 3.2284 22 6 3.1288 -7.9350 2.4041 23 8 2.9571 -3.7110 1.2489 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8897 27 1 0.4660 -4.9016 0.2526 28 1 1.5240 -5.3993 -1.1085 29 1 4.6289 -5.7547 1.9090 30 1 4.2061 -4.7651 3.3268 31 1 5.5733 -6.9538 3.7963 32 1 4.5363 -7.0384 5.2514 33 1 5.4512 -9.2282 3.5636 34 1 4.4499 -9.3181 5.0383 35 1 2.5622 -9.3529 3.8063 36 1 2.0923 -7.8877 2.0703 37 1 3.8096 -7.9114 1.5531 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260049686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:03 Heat of formation + Delta-G solvation = -104.985300 kcal Electronic energy + Delta-G solvation = -17741.912906 eV Core-core repulsion = 14904.420482 eV Total energy + Delta-G solvation = -2837.492424 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93657 -38.55427 -34.54096 -33.42391 -32.60172 -30.48479 -29.26515 -27.08608 -26.09916 -23.16905 -22.35159 -21.50110 -20.49032 -20.10556 -16.94085 -16.59014 -16.35157 -15.75715 -15.56768 -14.59427 -14.53647 -14.11261 -13.81494 -13.52083 -13.24203 -12.50310 -12.33682 -12.12770 -11.82476 -11.74155 -11.59043 -11.33385 -11.23779 -11.02285 -10.81739 -10.61236 -10.51524 -10.48385 -9.85157 -9.65923 -9.13741 -8.76486 -8.71728 -8.40303 -6.02756 -4.03621 3.32132 3.38191 3.43498 4.05723 4.06437 4.37871 4.45571 4.59616 4.80064 4.93496 5.11680 5.28602 5.34372 5.37698 5.39033 5.47853 5.53759 5.55868 5.62981 5.77237 5.81147 5.90149 5.93550 6.11649 6.13899 6.22483 6.38151 6.42037 6.64576 6.79499 7.23791 7.33451 7.57134 7.78815 7.95074 8.36428 9.00925 9.59754 11.08960 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.047532 B = 0.004733 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.933433 B = 5914.575456 C = 6281.575692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.058 0.942 9 C 0.014 3.986 10 C 0.061 3.939 11 H 0.080 0.920 12 C 0.016 3.984 13 O -0.384 6.384 14 C 0.227 3.773 15 H 0.064 0.936 16 C -0.105 4.105 17 C -0.120 4.120 18 H 0.074 0.926 19 C -0.148 4.148 20 C 0.042 3.958 21 N -0.680 5.680 22 C 0.056 3.944 23 O -0.368 6.368 24 H 0.261 0.739 25 H 0.031 0.969 26 H 0.023 0.977 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.333 0.667 36 H 0.082 0.918 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.602 -14.839 6.380 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.004 3.996 11 H 0.097 0.903 12 C -0.061 4.061 13 O -0.305 6.305 14 C 0.132 3.868 15 H 0.081 0.919 16 C -0.143 4.143 17 C -0.140 4.140 18 H 0.093 0.907 19 C -0.187 4.187 20 C -0.088 4.088 21 N -0.306 5.306 22 C -0.073 4.073 23 O -0.289 6.289 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.090 0.910 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.100 0.900 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.984 -15.231 5.928 17.405 hybrid contribution -0.181 1.810 0.672 1.939 sum 5.803 -13.421 6.600 16.043 Atomic orbital electron populations 1.69956 1.06059 1.26688 1.51158 1.25004 0.94860 0.99325 0.95344 0.86548 0.79913 0.83234 0.78078 1.20662 1.21251 1.19798 1.21114 0.93204 0.90427 1.50056 0.92331 1.19460 0.93351 0.91564 0.97971 1.23827 0.94634 0.95389 0.85790 0.90256 1.24457 0.96291 0.90259 0.95059 1.89361 1.72390 1.33475 1.35276 1.24194 0.95155 0.78373 0.89077 0.91904 1.21654 0.97183 0.96521 0.98947 1.22654 0.97999 0.96034 0.97351 0.90749 1.22849 0.99111 0.96539 1.00232 1.22711 0.95165 0.94185 0.96726 1.62828 1.06923 1.36684 1.24199 1.23221 1.02640 0.85620 0.95865 1.88978 1.69620 1.35769 1.34562 0.92985 0.95105 0.95882 0.91023 0.88397 0.90438 0.89922 0.90943 0.91517 0.90812 0.91916 0.85201 0.89959 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.54 8.97 -34.44 -0.31 -14.84 16 8 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 9 C 0.01 0.34 4.59 -27.88 -0.13 0.22 16 10 C 0.06 1.28 3.66 -25.96 -0.10 1.18 16 11 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 12 C 0.02 0.27 7.38 37.92 0.28 0.55 16 13 O -0.38 -6.38 9.29 -59.28 -0.55 -6.93 16 14 C 0.23 3.88 3.86 37.16 0.14 4.02 16 15 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.10 -1.46 4.81 -26.73 -0.13 -1.58 16 17 C -0.12 -1.39 3.06 -88.76 -0.27 -1.66 16 18 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 19 C -0.15 -1.45 6.51 -25.38 -0.17 -1.62 16 20 C 0.04 0.40 7.52 -2.76 -0.02 0.38 16 21 N -0.68 -7.34 7.52 -109.93 -0.83 -8.16 16 22 C 0.06 0.67 5.57 -1.79 -0.01 0.66 16 23 O -0.37 -7.90 10.80 -59.28 -0.64 -8.54 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.20 7.86 -51.93 -0.41 0.79 16 28 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.08 1.10 8.05 -51.92 -0.42 0.68 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.33 3.11 8.91 -39.29 -0.35 2.76 16 36 H 0.08 1.04 7.40 -51.93 -0.38 0.66 16 37 H 0.08 1.12 7.98 -51.93 -0.41 0.70 16 LS Contribution 298.67 15.07 4.50 4.50 Total: -1.00 -30.62 298.67 -8.75 -39.38 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.15 Total: 0.22 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.80 Total: -11.21 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: -0.09 Total: -34.28 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -1.19 Total: -15.47 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.62 -8.75 -39.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.609 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds