Wall clock time and date at job start Mon Mar 30 2020 03:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48497 * 109.47486 * 270.00489 * 3 2 1 5 5 H 1.48505 * 109.47164 * 30.00657 * 3 2 1 6 6 H 1.48499 * 109.47123 * 150.00198 * 3 2 1 7 7 C 1.37877 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00236 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47256 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.27843 * 305.70069 * 10 9 7 12 12 C 1.54458 * 110.31866 * 183.58676 * 10 9 7 13 13 O 1.45002 * 102.81457 * 219.36270 * 12 10 9 14 14 C 1.44388 * 103.29453 * 36.50340 * 13 12 10 15 15 H 1.08999 * 110.11814 * 80.01141 * 14 13 12 16 16 C 1.52996 * 110.11358 * 201.65709 * 14 13 12 17 17 C 1.53001 * 109.47138 * 291.74008 * 16 14 13 18 18 H 1.08994 * 110.64582 * 305.70069 * 17 16 14 19 19 C 1.54602 * 110.72633 * 182.54735 * 17 16 14 20 20 C 1.53982 * 105.14146 * 219.68693 * 19 17 16 21 21 N 1.47910 * 107.05966 * 358.77434 * 20 19 17 22 22 C 1.48731 * 105.94084 * 25.20176 * 21 20 19 23 23 O 1.43786 * 106.16925 * 320.82980 * 14 13 12 24 24 H 0.97002 * 119.99503 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47243 * 60.00713 * 9 7 2 26 26 H 1.08999 * 109.47306 * 300.00056 * 9 7 2 27 27 H 1.09002 * 110.72696 * 337.65223 * 12 10 9 28 28 H 1.08997 * 110.72862 * 100.94647 * 12 10 9 29 29 H 1.09008 * 109.47528 * 51.74214 * 16 14 13 30 30 H 1.09002 * 109.47462 * 171.74192 * 16 14 13 31 31 H 1.09002 * 110.30571 * 338.60215 * 19 17 16 32 32 H 1.09002 * 110.30656 * 100.66520 * 19 17 16 33 33 H 1.08997 * 109.92100 * 118.12616 * 20 19 17 34 34 H 1.09005 * 109.91937 * 239.22661 * 20 19 17 35 35 H 1.00905 * 110.99390 * 264.81965 * 21 20 19 36 36 H 1.08998 * 110.83401 * 202.57592 * 22 21 20 37 37 H 1.09005 * 110.58144 * 79.38408 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 1 2.9442 -3.5616 -0.8309 12 6 1.4948 -5.0092 -0.0912 13 8 2.2501 -5.8592 0.8087 14 6 2.6261 -4.9619 1.8757 15 1 1.7916 -4.8272 2.5638 16 6 3.8416 -5.5137 2.6233 17 6 3.4405 -6.7779 3.3861 18 1 2.5863 -6.5811 4.0339 19 6 4.6330 -7.3248 4.2041 20 6 4.5535 -8.8555 4.0568 21 7 3.3642 -9.1505 3.2284 22 6 3.1288 -7.9350 2.4041 23 8 2.9571 -3.7110 1.2489 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8897 27 1 0.4660 -4.9016 0.2526 28 1 1.5240 -5.3993 -1.1085 29 1 4.6289 -5.7547 1.9090 30 1 4.2061 -4.7651 3.3268 31 1 5.5733 -6.9538 3.7963 32 1 4.5363 -7.0384 5.2514 33 1 5.4512 -9.2282 3.5636 34 1 4.4499 -9.3181 5.0383 35 1 2.5622 -9.3529 3.8063 36 1 2.0923 -7.8877 2.0703 37 1 3.8096 -7.9114 1.5531 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260049686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:03 Heat of formation + Delta-G solvation = -126.309947 kcal Electronic energy + Delta-G solvation = -17742.837612 eV Core-core repulsion = 14904.420482 eV Total energy + Delta-G solvation = -2838.417131 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36216 -39.50576 -36.14522 -35.22088 -34.02632 -32.13922 -30.17195 -28.66603 -27.43697 -25.06273 -23.55599 -22.53582 -22.13281 -21.03796 -18.54568 -18.05198 -17.89601 -17.10466 -16.91249 -16.57050 -15.50510 -15.24165 -15.11360 -14.79906 -14.59967 -14.15093 -13.79187 -13.55810 -13.29255 -13.16921 -12.97493 -12.87393 -12.58536 -12.38260 -12.28402 -12.00402 -11.82558 -11.75028 -11.43422 -11.16966 -11.10384 -10.60722 -10.42131 -9.56038 -8.22775 -6.31698 1.38686 1.39822 1.51485 2.39790 2.65100 2.91242 3.12230 3.39683 3.67861 3.74318 3.82159 3.97593 4.05492 4.14215 4.23525 4.33874 4.46446 4.51769 4.54655 4.65927 4.73146 4.74856 4.89785 4.93056 5.03521 5.15254 5.18737 5.20760 5.30803 5.39325 5.53262 5.73385 5.80946 6.12405 6.25444 6.48358 6.80437 7.36159 8.89067 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.047532 B = 0.004733 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.933433 B = 5914.575456 C = 6281.575692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.019 3.981 10 C 0.062 3.938 11 H 0.081 0.919 12 C 0.025 3.975 13 O -0.376 6.376 14 C 0.222 3.778 15 H 0.062 0.938 16 C -0.097 4.097 17 C -0.115 4.115 18 H 0.078 0.922 19 C -0.143 4.143 20 C 0.042 3.958 21 N -0.687 5.687 22 C 0.060 3.940 23 O -0.396 6.396 24 H 0.264 0.736 25 H 0.020 0.980 26 H -0.004 1.004 27 H 0.073 0.927 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.342 0.658 36 H 0.073 0.927 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.552 -15.463 6.980 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.071 0.929 9 C -0.018 4.018 10 C 0.005 3.995 11 H 0.099 0.901 12 C -0.052 4.052 13 O -0.296 6.296 14 C 0.127 3.873 15 H 0.080 0.920 16 C -0.135 4.135 17 C -0.136 4.136 18 H 0.096 0.904 19 C -0.182 4.182 20 C -0.087 4.087 21 N -0.314 5.314 22 C -0.070 4.070 23 O -0.318 6.318 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.014 0.986 27 H 0.091 0.909 28 H 0.146 0.854 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.158 0.842 36 H 0.092 0.908 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.937 -15.878 6.532 18.517 hybrid contribution -0.500 1.971 0.505 2.095 sum 6.436 -13.907 7.037 16.863 Atomic orbital electron populations 1.70065 1.07548 1.27820 1.51794 1.25886 0.95772 1.03090 0.94766 0.85480 0.78530 0.78633 0.78620 1.19426 1.20569 1.19414 1.21473 0.93210 0.92098 1.50244 0.92915 1.19315 0.93728 0.92761 0.96010 1.23623 0.94036 0.95795 0.86027 0.90124 1.24416 0.95714 0.88247 0.96800 1.89379 1.72285 1.32910 1.35034 1.24457 0.96645 0.77264 0.88961 0.92038 1.21621 0.95574 0.97533 0.98740 1.22616 0.99023 0.94659 0.97272 0.90362 1.22824 0.98093 0.96676 1.00629 1.22758 0.94521 0.93956 0.97496 1.62789 1.07852 1.35947 1.24835 1.23068 1.01637 0.86500 0.95771 1.88939 1.69711 1.38254 1.34881 0.92679 0.96229 0.98567 0.90875 0.85401 0.90747 0.89675 0.90969 0.90143 0.90935 0.89950 0.84189 0.90819 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.53 -30.83 8.97 25.60 0.23 -30.60 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.02 0.99 4.59 29.85 0.14 1.13 16 10 C 0.06 2.64 3.66 31.09 0.11 2.75 16 11 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 12 C 0.02 0.82 7.38 72.48 0.53 1.35 16 13 O -0.38 -12.09 9.29 -125.98 -1.17 -13.26 16 14 C 0.22 7.47 3.86 71.98 0.28 7.75 16 15 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 16 C -0.10 -2.59 4.81 30.59 0.15 -2.44 16 17 C -0.12 -2.48 3.06 -9.59 -0.03 -2.51 16 18 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 19 C -0.14 -2.48 6.51 31.47 0.20 -2.28 16 20 C 0.04 0.70 7.52 86.44 0.65 1.35 16 21 N -0.69 -13.52 7.52 -501.72 -3.77 -17.30 16 22 C 0.06 1.36 5.57 86.61 0.48 1.84 16 23 O -0.40 -17.11 10.80 -125.98 -1.36 -18.47 16 24 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 25 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.07 2.41 7.86 -2.39 -0.02 2.40 16 28 H 0.13 3.48 8.14 -2.39 -0.02 3.46 16 29 H 0.07 2.04 8.05 -2.38 -0.02 2.02 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.07 1.27 7.85 -2.39 -0.02 1.25 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.34 5.68 8.91 -89.69 -0.80 4.88 16 36 H 0.07 1.79 7.40 -2.39 -0.02 1.77 16 37 H 0.07 1.76 7.98 -2.38 -0.02 1.74 16 Total: -1.00 -65.32 298.67 -0.54 -65.86 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.24 Total: 13.31 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 3.21 Total: -21.05 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: -3.49 Total: -73.34 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -2.53 Total: -31.73 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.32 -0.54 -65.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.453 kcal (2) G-P(sol) polarization free energy of solvation -65.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds