Wall clock time and date at job start Mon Mar 30 2020 03:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00325 * 2 1 4 4 H 1.48502 * 109.46943 * 240.00298 * 3 2 1 5 5 H 1.48504 * 109.46814 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46975 * 120.00104 * 3 2 1 7 7 C 1.37880 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00505 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99916 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47326 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.30736 * 307.18782 * 10 9 7 12 12 C 1.54174 * 110.34751 * 184.99943 * 10 9 7 13 13 O 1.44291 * 105.03252 * 241.07985 * 12 10 9 14 14 C 1.44562 * 104.52955 * 336.48132 * 13 12 10 15 15 H 1.08994 * 110.32426 * 280.42545 * 14 13 12 16 16 C 1.53007 * 110.51350 * 158.10071 * 14 13 12 17 17 C 1.53003 * 109.46945 * 69.63125 * 16 14 13 18 18 H 1.08990 * 109.88226 * 305.69592 * 17 16 14 19 19 C 1.54324 * 109.88405 * 184.66372 * 17 16 14 20 20 C 1.55389 * 102.89629 * 218.40813 * 19 17 16 21 21 C 1.54907 * 101.74518 * 35.48556 * 20 19 17 22 22 N 1.47450 * 109.88572 * 66.73184 * 17 16 14 23 23 O 1.44288 * 110.34653 * 69.48251 * 10 9 7 24 24 H 0.96998 * 119.99796 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47468 * 60.00145 * 9 7 2 26 26 H 1.09005 * 109.47076 * 300.00505 * 9 7 2 27 27 H 1.09002 * 110.34726 * 0.02562 * 12 10 9 28 28 H 1.09003 * 110.34586 * 122.16187 * 12 10 9 29 29 H 1.09001 * 109.46436 * 189.62891 * 16 14 13 30 30 H 1.08993 * 109.47192 * 309.62975 * 16 14 13 31 31 H 1.08997 * 110.70343 * 336.69612 * 19 17 16 32 32 H 1.09002 * 110.70268 * 99.93037 * 19 17 16 33 33 H 1.08999 * 110.87498 * 277.39076 * 20 19 17 34 34 H 1.09011 * 111.05730 * 153.65635 * 20 19 17 35 35 H 1.09005 * 110.37477 * 204.18699 * 21 20 19 36 36 H 1.08998 * 110.37089 * 81.84572 * 21 20 19 37 37 H 1.00894 * 110.99972 * 356.14226 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9606 -3.5482 -0.8149 12 6 1.4989 -5.0053 -0.1265 13 8 1.8249 -5.7291 1.0784 14 6 3.0722 -5.1493 1.5234 15 1 3.9051 -5.5584 0.9517 16 6 3.2777 -5.4020 3.0184 17 6 3.5481 -6.8898 3.2517 18 1 2.7492 -7.4854 2.8103 19 6 3.6408 -7.1754 4.7655 20 6 4.7851 -8.2231 4.8513 21 6 5.7376 -7.7426 3.7281 22 7 4.8425 -7.2642 2.6530 23 8 2.9315 -3.7354 1.2665 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 0.4237 -4.8372 -0.1889 28 1 1.8474 -5.5518 -1.0029 29 1 4.1278 -4.8184 3.3719 30 1 2.3816 -5.1057 3.5635 31 1 3.9054 -6.2707 5.3128 32 1 2.7046 -7.5920 5.1371 33 1 4.4104 -9.2254 4.6434 34 1 5.2776 -8.1866 5.8231 35 1 6.3511 -8.5698 3.3711 36 1 6.3678 -6.9290 4.0873 37 1 5.2525 -6.4844 2.1613 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:09 Heat of formation + Delta-G solvation = -104.428670 kcal Electronic energy + Delta-G solvation = -17676.836081 eV Core-core repulsion = 14839.367794 eV Total energy + Delta-G solvation = -2837.468287 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.91872 -38.58990 -34.47813 -33.34560 -32.29524 -30.32928 -30.20826 -27.10031 -26.05530 -23.13388 -22.47033 -21.09352 -20.79692 -19.95238 -17.13756 -16.37074 -16.18347 -15.84195 -15.48316 -15.12948 -14.69339 -14.26488 -13.45775 -13.41020 -13.04205 -12.55893 -12.36831 -12.15192 -11.88657 -11.85565 -11.58852 -11.36173 -11.16117 -11.09355 -10.93713 -10.78510 -10.58488 -10.49465 -9.93083 -9.44271 -9.08094 -8.98034 -8.52469 -8.38125 -6.00795 -4.02132 3.34618 3.38418 3.41774 4.01054 4.09629 4.40804 4.46377 4.54837 4.61231 4.90035 5.11961 5.19120 5.26754 5.32911 5.35927 5.38245 5.48926 5.53421 5.64593 5.72283 5.77608 5.80691 5.90497 5.95167 6.06848 6.25127 6.31419 6.55742 6.76408 6.81388 7.23355 7.33034 7.56965 7.80570 7.95838 8.37179 9.01570 9.60851 11.10791 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038087 B = 0.004824 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.989801 B = 5802.802187 C = 6131.877372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.056 3.944 11 H 0.070 0.930 12 C 0.018 3.982 13 O -0.383 6.383 14 C 0.222 3.778 15 H 0.065 0.935 16 C -0.130 4.130 17 C 0.081 3.919 18 H 0.093 0.907 19 C -0.139 4.139 20 C -0.130 4.130 21 C 0.043 3.957 22 N -0.682 5.682 23 O -0.361 6.361 24 H 0.261 0.739 25 H 0.033 0.967 26 H 0.028 0.972 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 -14.581 6.504 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.001 4.001 11 H 0.088 0.912 12 C -0.058 4.058 13 O -0.304 6.304 14 C 0.127 3.873 15 H 0.082 0.918 16 C -0.169 4.169 17 C -0.029 4.029 18 H 0.111 0.889 19 C -0.177 4.177 20 C -0.168 4.168 21 C -0.086 4.086 22 N -0.313 5.313 23 O -0.282 6.282 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.783 -15.095 6.511 18.189 hybrid contribution 0.715 1.844 0.170 1.985 sum 8.498 -13.251 6.681 17.101 Atomic orbital electron populations 1.69942 1.06041 1.26812 1.50898 1.24996 0.94857 0.99272 0.95314 0.86609 0.79537 0.82942 0.78639 1.20235 1.21293 1.20236 1.21087 0.93090 0.90542 1.50431 0.92487 1.19311 0.93053 0.90713 0.98247 1.23877 0.94876 0.96160 0.85159 0.91190 1.24197 1.02340 0.92105 0.87194 1.89186 1.40503 1.59078 1.41663 1.24345 0.87519 0.80447 0.94990 0.91762 1.22146 1.03963 0.96358 0.94405 1.22263 0.93000 0.94131 0.93462 0.88889 1.22912 0.99447 0.99267 0.96108 1.22731 0.96278 0.99410 0.98335 1.22841 0.95196 0.99344 0.91212 1.62097 1.03681 1.39617 1.25870 1.89377 1.77794 1.21506 1.39513 0.92894 0.94908 0.95342 0.88623 0.91965 0.90140 0.89436 0.91154 0.90553 0.90776 0.91021 0.90520 0.94047 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.75 9.00 -34.44 -0.31 -15.06 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.62 4.50 -27.88 -0.13 0.49 16 10 C 0.06 1.21 3.48 -26.12 -0.09 1.12 16 11 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 12 C 0.02 0.33 7.55 37.77 0.29 0.62 16 13 O -0.38 -7.07 11.21 -59.40 -0.67 -7.74 16 14 C 0.22 3.84 3.67 37.16 0.14 3.97 16 15 H 0.07 1.02 6.99 -51.93 -0.36 0.65 16 16 C -0.13 -1.87 4.56 -26.73 -0.12 -1.99 16 17 C 0.08 0.99 3.44 -66.72 -0.23 0.76 16 18 H 0.09 1.28 7.91 -51.93 -0.41 0.87 16 19 C -0.14 -1.40 6.49 -24.77 -0.16 -1.56 16 20 C -0.13 -1.14 7.08 -24.46 -0.17 -1.31 16 21 C 0.04 0.41 7.58 -2.30 -0.02 0.39 16 22 N -0.68 -7.96 7.21 -103.81 -0.75 -8.71 16 23 O -0.36 -7.87 11.05 -59.40 -0.66 -8.52 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.10 1.71 7.71 -51.93 -0.40 1.31 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.07 0.69 7.85 -51.93 -0.41 0.29 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.34 3.92 7.14 -39.30 -0.28 3.64 16 LS Contribution 299.63 15.07 4.52 4.52 Total: -1.00 -31.28 299.63 -8.80 -40.08 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.05 Total: 0.78 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -0.90 Total: -11.02 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.01 Total: -35.02 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -1.32 Total: -16.26 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.28 -8.80 -40.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.352 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds