Wall clock time and date at job start Mon Mar 30 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48495 * 109.47012 * 269.99892 * 3 2 1 5 5 H 1.48494 * 109.47094 * 30.00131 * 3 2 1 6 6 H 1.48503 * 109.46849 * 150.00136 * 3 2 1 7 7 C 1.37878 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99905 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00145 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46929 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.75555 * 303.28355 * 10 9 7 12 12 C 1.54915 * 110.69415 * 180.10976 * 10 9 7 13 13 O 1.44788 * 101.72171 * 206.04113 * 12 10 9 14 14 C 1.43750 * 104.81511 * 36.10619 * 13 12 10 15 15 H 1.08991 * 109.51107 * 95.49133 * 14 13 12 16 16 C 1.53000 * 109.62891 * 215.81029 * 14 13 12 17 17 C 1.52997 * 109.47060 * 294.36141 * 16 14 13 18 18 H 1.09009 * 110.37049 * 307.35288 * 17 16 14 19 19 C 1.54376 * 110.41253 * 185.00165 * 17 16 14 20 20 C 1.54263 * 105.05936 * 217.36567 * 19 17 16 21 21 C 1.54376 * 105.06409 * 0.02562 * 20 19 17 22 22 N 1.48560 * 104.59204 * 23.84944 * 21 20 19 23 23 O 1.43365 * 108.78965 * 335.68250 * 14 13 12 24 24 H 0.97005 * 119.99782 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47181 * 59.99996 * 9 7 2 26 26 H 1.09001 * 109.46732 * 300.00237 * 9 7 2 27 27 H 1.09001 * 110.97977 * 324.15425 * 12 10 9 28 28 H 1.09004 * 110.97555 * 87.89462 * 12 10 9 29 29 H 1.09002 * 109.47398 * 54.36310 * 16 14 13 30 30 H 1.09001 * 109.47194 * 174.36491 * 16 14 13 31 31 H 1.08998 * 110.32590 * 336.26327 * 19 17 16 32 32 H 1.09006 * 110.32366 * 98.47756 * 19 17 16 33 33 H 1.09004 * 110.32125 * 118.89924 * 20 19 17 34 34 H 1.09003 * 110.32829 * 241.10008 * 20 19 17 35 35 H 1.08993 * 110.41293 * 142.62883 * 21 20 19 36 36 H 1.09003 * 110.41297 * 264.95789 * 21 20 19 37 37 H 1.00904 * 111.00303 * 200.96551 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 0.0001 11 1 3.6231 -3.1870 0.8524 12 6 5.5702 -2.6697 0.0023 13 8 5.8379 -3.9492 -0.6203 14 6 4.8113 -4.0957 -1.6157 15 1 5.1897 -3.7597 -2.5811 16 6 4.3930 -5.5643 -1.7105 17 6 5.5652 -6.3957 -2.2353 18 1 5.9490 -5.9680 -3.1617 19 6 5.1298 -7.8599 -2.4581 20 6 6.3472 -8.7086 -2.0369 21 6 7.4155 -7.6858 -1.5943 22 7 6.6410 -6.4766 -1.2135 23 8 3.6828 -3.2970 -1.2362 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6797 0.8894 26 1 3.8744 -0.6808 -0.8905 27 1 5.9789 -1.8530 -0.5928 28 1 5.9597 -2.6411 1.0199 29 1 4.1054 -5.9247 -0.7228 30 1 3.5473 -5.6580 -2.3918 31 1 4.2683 -8.0978 -1.8343 32 1 4.8957 -8.0295 -3.5092 33 1 6.0831 -9.3631 -1.2062 34 1 6.7104 -9.2948 -2.8810 35 1 7.9733 -8.0651 -0.7382 36 1 8.0921 -7.4619 -2.4190 37 1 7.2229 -5.6526 -1.2354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:13 Heat of formation + Delta-G solvation = -96.870127 kcal Electronic energy + Delta-G solvation = -17772.698805 eV Core-core repulsion = 14935.558281 eV Total energy + Delta-G solvation = -2837.140524 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.95957 -38.40363 -34.58164 -33.34100 -32.23887 -30.56475 -30.25094 -27.40819 -26.08451 -22.99564 -22.31819 -20.97675 -20.36972 -20.21596 -17.06839 -16.87903 -16.56694 -15.66977 -15.42490 -15.10270 -14.41837 -14.09461 -13.55411 -13.18178 -12.96539 -12.79139 -12.45701 -12.17251 -11.93874 -11.88327 -11.68841 -11.56859 -11.39541 -11.13108 -11.00393 -10.60540 -10.49660 -10.14042 -9.73037 -9.58329 -9.26350 -8.87542 -8.53884 -8.51426 -6.02252 -3.99963 3.30273 3.37406 3.38345 3.92041 4.20101 4.35027 4.44610 4.69895 4.76651 4.96180 5.06137 5.20349 5.30265 5.35255 5.38901 5.42150 5.49477 5.59354 5.68467 5.72668 5.76113 5.80707 5.93662 5.97366 6.04244 6.15398 6.33652 6.38184 6.63128 6.82701 6.97067 7.20830 7.42584 7.67758 7.79958 8.54850 9.04980 9.58179 11.11353 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.054056 B = 0.004834 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.853869 B = 5791.467216 C = 6136.185231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.511 4.511 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.074 3.926 11 H 0.077 0.923 12 C 0.015 3.985 13 O -0.377 6.377 14 C 0.228 3.772 15 H 0.066 0.934 16 C -0.118 4.118 17 C 0.071 3.929 18 H 0.046 0.954 19 C -0.121 4.121 20 C -0.124 4.124 21 C 0.032 3.968 22 N -0.650 5.650 23 O -0.364 6.364 24 H 0.263 0.737 25 H 0.033 0.967 26 H 0.020 0.980 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.593 -12.716 -4.104 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.094 0.906 9 C -0.050 4.050 10 C 0.017 3.983 11 H 0.095 0.905 12 C -0.062 4.062 13 O -0.297 6.297 14 C 0.132 3.868 15 H 0.084 0.916 16 C -0.156 4.156 17 C -0.039 4.039 18 H 0.064 0.936 19 C -0.159 4.159 20 C -0.162 4.162 21 C -0.097 4.097 22 N -0.281 5.281 23 O -0.285 6.285 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 14.015 -13.014 -3.605 19.463 hybrid contribution 0.891 1.367 -0.870 1.849 sum 14.906 -11.647 -4.474 19.439 Atomic orbital electron populations 1.69909 1.06246 1.26787 1.51149 1.25010 0.94755 0.98975 0.94735 0.86811 0.80266 0.83871 0.78502 1.20290 1.21303 1.19126 1.20988 0.88764 0.94750 1.50425 0.90610 1.19748 0.98560 0.89584 0.97153 1.23782 0.91243 0.96684 0.86598 0.90469 1.24547 0.96774 0.85762 0.99095 1.89141 1.50323 1.37391 1.52875 1.23956 0.79324 0.91920 0.91558 0.91624 1.21988 0.97123 0.93058 1.03479 1.22366 0.93055 0.95319 0.93136 0.93629 1.22339 0.98567 0.93840 1.01163 1.22279 0.95422 0.97707 1.00794 1.22902 0.95535 0.92289 0.99001 1.63667 1.12333 1.05520 1.46595 1.89038 1.36509 1.61983 1.40930 0.92737 0.94934 0.96129 0.91362 0.88083 0.89824 0.89707 0.90743 0.91519 0.91180 0.91779 0.90499 0.94802 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.51 -14.80 9.51 -34.44 -0.33 -15.13 16 8 H 0.08 2.41 7.99 -52.49 -0.42 1.99 16 9 C -0.01 -0.31 3.82 -27.88 -0.11 -0.42 16 10 C 0.07 1.52 3.62 -25.72 -0.09 1.43 16 11 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 12 C 0.01 0.24 7.40 38.17 0.28 0.52 16 13 O -0.38 -6.11 9.14 -59.04 -0.54 -6.65 16 14 C 0.23 3.82 4.01 37.16 0.15 3.97 16 15 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 16 C -0.12 -1.72 4.96 -26.73 -0.13 -1.85 16 17 C 0.07 0.87 3.12 -66.06 -0.21 0.66 16 18 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 19 C -0.12 -1.25 6.55 -25.35 -0.17 -1.42 16 20 C -0.12 -1.15 7.00 -25.35 -0.18 -1.32 16 21 C 0.03 0.32 7.47 -2.18 -0.02 0.31 16 22 N -0.65 -8.09 6.61 -102.73 -0.68 -8.76 16 23 O -0.36 -7.76 10.75 -59.04 -0.63 -8.40 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 26 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 27 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 28 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.34 4.35 7.49 -39.29 -0.29 4.06 16 LS Contribution 295.62 15.07 4.45 4.45 Total: -1.00 -31.50 295.62 -8.31 -39.81 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.12 Total: 1.38 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.89 Total: -11.41 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.09 Total: -36.10 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -1.17 Total: -15.05 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.50 -8.31 -39.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.062 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds